View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20048_low_5 (Length: 315)
Name: NF20048_low_5
Description: NF20048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20048_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 47339717 - 47339430
Alignment:
| Q |
11 |
cagagaggttcaacttggcaagaaactgcttggctgcaaggcagtttgctatagcaggagcagcatcaactgtaatatcgtttccactcatctcgagaac |
110 |
Q |
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| T |
47339717 |
cagagaggttcaacttggcaagaaactgcttggctgcaaggcagtttgctatagcaggagcagcatcaactgtaatattgtttccactcatctcgagaac |
47339618 |
T |
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| Q |
111 |
ttcaaggcaaggagctgatgccttaagagcattagctatagcaattgctccttcgtcttccaagttcaggaagctcaggtatatctcttttaactctgca |
210 |
Q |
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| T |
47339617 |
ttcaaggcgaggagctgatgccttaagagcattagctatagcaattgctccttcgtcttccaagttcaggaagctcaggtatatctctcttaactctgca |
47339518 |
T |
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| Q |
211 |
ttcttggcaagagctttactcagagaaaccccaccctctacacctaacatgttgtctcgcaaatcaagcttcctcaaatgggtgcaat |
298 |
Q |
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| T |
47339517 |
ttcttggcaagagctttactcagggaaaccccaccctctacacctaacatgttgtctcgcaaatcaagcttcctcaaatgggtgcaat |
47339430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 32062017 - 32061944
Alignment:
| Q |
224 |
ctttactcagagaaaccccaccctctacacctaacatgttgtctcgcaaatcaagcttcctcaaatgggtgcaa |
297 |
Q |
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||||||| |||| ||| ||| | || ||||| ||||||||||| ||||||||||||||| ||||||| |||||| |
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| T |
32062017 |
ctttacttagagcaactccagcttccacaccaaacatgttgtcacgcaaatcaagcttcttcaaatgcgtgcaa |
32061944 |
T |
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