View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20049_low_1 (Length: 491)
Name: NF20049_low_1
Description: NF20049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20049_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 16 - 491
Target Start/End: Original strand, 50300874 - 50301349
Alignment:
| Q |
16 |
cacagacatatgatttcagggcagtacctgtctatgacggatataacatacaagaactgaagagcagctccaacagcaaaagcaactccccaaaaaatct |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50300874 |
cacaaacatatgatttcagggcagtacctgtctatgacggatataacatacaagaactgaagagcagctccaacagcaaaagcaactccccaaaaaatct |
50300973 |
T |
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| Q |
116 |
ggttagtccagaaacacaaaacacttatgacagccagataagtggtgaggatgtgaacagaaactttcatcatttgagtagcctgggaacccaacaacaa |
215 |
Q |
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| T |
50300974 |
ggttagtccagaaacacaaaacacttatgacagccagataagtggtgaggatgtgaacagaaactttcatcatttgagtagcctgggaacccaacaacaa |
50301073 |
T |
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| Q |
216 |
caaccaagtccatccaagaacagtcccaattccaccagcagccgcataaagcggccaataagtttcggttaacccggcatgattcccagtaagaccagga |
315 |
Q |
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| T |
50301074 |
caaccaagtccatccaagaacagtcccaattccaccagcagccgcataaagcggccaataagtttcggttaacccggcatgattcccagtaagaccagga |
50301173 |
T |
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| Q |
316 |
gtgtacttatcaatgttcagtctattctctttctcaaacctgttgagaccaagaacccccaaaaggaatcccagtgcaatcaaatgaatgacaaatattc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50301174 |
gtgtacttatcaatgttcagtctattctctttctcaaacctgttgagaccaagaacccccaaaaggaatcccagtgcaatcaaatgaatgacaaatattc |
50301273 |
T |
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| Q |
416 |
ctaaccagaaaacatcatgccaccgccgcgattgttctgccgccgccaccatttcactgctgcctccgccacttct |
491 |
Q |
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| T |
50301274 |
ctaaccagaaaacatcatgccaccgccgcgattgttctgccgccgccaccatttcactgctgccgccgccacttct |
50301349 |
T |
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Back To:
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Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 41 - 244
Target Start/End: Complemental strand, 22573354 - 22573151
Alignment:
| Q |
41 |
acctgtctatgacggatataacatacaagaactgaagagcagctccaacagcaaaagcaactccccaaaaaatctggttagtccagaaacacaaaacact |
140 |
Q |
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|||| |||||||| ||||||| |||||| ||||| ||||| ||||||| |||||||||||| ||||| |||| ||||| || |||||||||||||||||| |
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| T |
22573354 |
acctatctatgacagatataatatacaaaaactgcagagctgctccaatagcaaaagcaacaccccagaaaaactggtgagcccagaaacacaaaacact |
22573255 |
T |
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| Q |
141 |
tatgacagccagataagtggtgaggatgtgaacagaaactttcatcatttgagtagcctgggaacccaacaacaacaaccaagtccatccaagaacagtc |
240 |
Q |
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| T |
22573254 |
gatcacagcaagataagtggtaagaatatggacagacaccttcatcatctggattgcgcgtgaacccaacagcaacaaccaactccatccaagagcagtt |
22573155 |
T |
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| Q |
241 |
ccaa |
244 |
Q |
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|||| |
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| T |
22573154 |
ccaa |
22573151 |
T |
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