View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20049_low_2 (Length: 397)
Name: NF20049_low_2
Description: NF20049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20049_low_2 |
 | |
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| [»] chr3 (15 HSPs) |
| |
|
| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 2769763 - 2769384
Alignment:
| Q |
18 |
ttttgccattcagttcttgttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2769763 |
ttttgccattcagttcttgttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagctgcttgcattttcgaacaatttctttag |
2769664 |
T |
|
| Q |
118 |
acatggactgaagctctggtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2769663 |
acatggactgaagctctggtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgttaggaggcaaaagttgcat |
2769564 |
T |
|
| Q |
218 |
gttaagaacatggactagaaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatg |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2769563 |
gttaagaacatgaactagaaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatg |
2769464 |
T |
|
| Q |
318 |
gcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatgaaatacctcttattttctaggtattt |
397 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| |
|
|
| T |
2769463 |
gaaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgtaggtattt |
2769384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 2855254 - 2855620
Alignment:
| Q |
18 |
ttttgccattcagttcttgttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttag |
117 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |
|
|
| T |
2855254 |
ttttgccattcaatcattgttttagattttgttgaaagtagaccaccaatggctacaattgccagaggtagctgcttgcattttagaacaatttcttttg |
2855353 |
T |
|
| Q |
118 |
acatggactgaagctctggtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcat |
217 |
Q |
| |
|
||| | || ||||||||||||||| |||||| || |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2855354 |
acacagcctcaagctctggtggacaatgcccaccaggttcaaatctaaatactttcttacagaagagttcccatgctttgtttggaggcaaaagttgcag |
2855453 |
T |
|
| Q |
218 |
gttaagaacatggactagaaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatg |
317 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||| |||||||||||| |||||| |
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|
| T |
2855454 |
gttatgaatatgagttagaaaggatttcttgaaaaattctgcaacatgcatcattctagtagtgattatgatcctactacctttattgttattaggcatg |
2855553 |
T |
|
| Q |
318 |
gcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatgaaatacctcttat |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
2855554 |
gcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaataccaaatacctcttat |
2855620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 2838044 - 2838410
Alignment:
| Q |
18 |
ttttgccattcagttcttgttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttag |
117 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |
|
|
| T |
2838044 |
ttttgccattcaatcattgttttagattttgttgaaagtagaccaccaatggctacaattgccagaggtagctgcttgcatttttgaacaatttcttttg |
2838143 |
T |
|
| Q |
118 |
acatggactgaagctctggtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcat |
217 |
Q |
| |
|
||| | || ||||||||||||||| |||||| || |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838144 |
acacagccttaagctctggtggacaatgcccaccaggttcaaatctaaatactttcttacagaagagttcccatgctttgtttggaggcaaaagttgcag |
2838243 |
T |
|
| Q |
218 |
gttaagaacatggactagaaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatg |
317 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||| |||||||||||| |||||| |
|
|
| T |
2838244 |
gttatgaatatgagttagaaaggatttcttgaaaaattctgcaacatgcatcattctagtagtgattatgatcctactacctttattgttattaggcatg |
2838343 |
T |
|
| Q |
318 |
gcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatgaaatacctcttat |
384 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
2838344 |
gcaaattcaatctggtcggaaaaatcttcttgccaaacatcatcaaagaatatcaagtacctcttat |
2838410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 36 - 377
Target Start/End: Complemental strand, 2790996 - 2790655
Alignment:
| Q |
36 |
gttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttagacatggactgaagctctg |
135 |
Q |
| |
|
||||||| ||||||||||| |||||||| | ||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
2790996 |
gttttagcttttgttgaaagtagaccactgacggctacaattgccaggggtagctgcttgcattttcgaacaatttcttttgacatgaacttaagctctg |
2790897 |
T |
|
| Q |
136 |
gtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcatgttaagaacatggactag |
235 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||| ||||| |
|
|
| T |
2790896 |
gtggacaatgcccaccaagctcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggtgtcaaaagttgcaagttgtgaacatgaactag |
2790797 |
T |
|
| Q |
236 |
aaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatggcaaattcaacctggtcg |
335 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| || ||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
2790796 |
aaaagatttcttgaaaaaatctgcaacttgcatcattctagtggtgattatgatcctacaacctttattgttatttggaatggcaaattcaatctggtcg |
2790697 |
T |
|
| Q |
336 |
gaaaaatcttcttgccatacatcatcaaagaatatgaaatac |
377 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
2790696 |
gaaaaatcttcttgccatacatcatcgaagaatatcaaatac |
2790655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 34 - 384
Target Start/End: Complemental strand, 2807945 - 2807595
Alignment:
| Q |
34 |
ttgttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttagacatggactgaagctc |
133 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||| ||| | ||||| | || |||||| |
|
|
| T |
2807945 |
ttgttttatattttgttgaaagtagaccgccaatagctacaattgccaaaggtagctgcttgcattttcgaacaatatctattgacatagcctcaagctc |
2807846 |
T |
|
| Q |
134 |
tggtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcatgttaagaacatggact |
233 |
Q |
| |
|
|||||||| ||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||| |
|
|
| T |
2807845 |
cggtggacagtgcccatcaagatcgaatctaaatactttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaact |
2807746 |
T |
|
| Q |
234 |
agaaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatggcaaattcaacctggt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||| ||||||||| || ||||| |||||||||||||||| |
|
|
| T |
2807745 |
agaaaggatttcttgaaaaaatctgcaacttgcatcattctagttgtgattatgatcctactacctttattgttgttaggcatagcaaattcaacctggt |
2807646 |
T |
|
| Q |
334 |
cggaaaaatcttcttgccatacatcatcaaagaatatgaaatacctcttat |
384 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2807645 |
cagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttat |
2807595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 36 - 377
Target Start/End: Complemental strand, 2798037 - 2797696
Alignment:
| Q |
36 |
gttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttagacatggactgaagctctg |
135 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| | |||||||| | |||||||| |
|
|
| T |
2798037 |
gttttagcttttgtcgaaaatagaccaccaatggctacaattgccaggggtagctgcttgcattttcgaactatttctattgacatggagttaagctctg |
2797938 |
T |
|
| Q |
136 |
gtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcatgttaagaacatggactag |
235 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||| ||||||| ||| | |
|
|
| T |
2797937 |
gtggacaatgcccaccaacctcaaatctgaatgctttcttgcagaagagttcccatgatttgtttggtgtcaaaagttgcaagttgtgaacatgaacttg |
2797838 |
T |
|
| Q |
236 |
aaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatggcaaattcaacctggtcg |
335 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||| | ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
2797837 |
aaaggatttcttgaaaaaatctgcaacttgcatcattctcgtggtgatgatgatcctatttgctttgttgttattaggcatggcaaattcaacctggtca |
2797738 |
T |
|
| Q |
336 |
gaaaaatcttcttgccatacatcatcaaagaatatgaaatac |
377 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2797737 |
gaaaagtcttcttgccatacatcatcaaagaatatcaaatac |
2797696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 36 - 397
Target Start/End: Complemental strand, 2819233 - 2818872
Alignment:
| Q |
36 |
gttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttagacatggactgaagctctg |
135 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||||| ||||| ||||||||||||| | || || ||| || | |
|
|
| T |
2819233 |
gttttagattttgttgaaagtagaccaccaatggctacgattgccaaaggtaattgcttgaatttttgaacaatttcttttgccacaacctcaagttccg |
2819134 |
T |
|
| Q |
136 |
gtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcatgttaagaacatggactag |
235 |
Q |
| |
|
||||||| | ||| |||| ||| | || ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||| |
|
|
| T |
2819133 |
gtggacaacgaccaccaagctcagacctaaatactttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactag |
2819034 |
T |
|
| Q |
236 |
aaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatggcaaattcaacctggtcg |
335 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
2819033 |
aaatgatttcttgaaaaaatctgcaacttgcatcattcttgtggtgattatgatcctactacctttgttgttattgggcatggcaaattcaacctggtcg |
2818934 |
T |
|
| Q |
336 |
gaaaaatcttcttgccatacatcatcaaagaatatgaaatacctcttattttctaggtattt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
2818933 |
gaaaaatcttcttgccatacatcatcaaagaatattaaatacctcttatgttctaggtattt |
2818872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 2759908 - 2759529
Alignment:
| Q |
18 |
ttttgccattcagttcttgttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttag |
117 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||||| ||||||| ||| ||| |||||||| |||||||| ||||| | ||| | ||||||||||| | |
|
|
| T |
2759908 |
ttttgccattcaatcatggttttagattttgttgaaagtagaccagcaacggccacaattgcaagaggtagttgcttgaacttttgcacaatttcttttg |
2759809 |
T |
|
| Q |
118 |
acatggactgaagctctggtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcat |
217 |
Q |
| |
|
|| | || |||||| |||||||| |||| |||| ||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2759808 |
ccacagcctcaagctccggtggacaacgccctccaagatcatatctaaatactttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaa |
2759709 |
T |
|
| Q |
218 |
gttaagaacatggactagaaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatg |
317 |
Q |
| |
|
||| ||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
2759708 |
gttgtgaacatgaactagaaatgatttcttgaaaaaatctgcaacttgcataattctagtggtgattatgatcctactacctttgttgttattaggcatg |
2759609 |
T |
|
| Q |
318 |
gcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatgaaatacctcttattttctaggtattt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
2759608 |
gcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttctaggtattt |
2759529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 5413580 - 5413214
Alignment:
| Q |
18 |
ttttgccattcagttcttgttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttag |
117 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||| | |
|
|
| T |
5413580 |
ttttgccattcaataattgttttagattttgttgaaagtagaccaccaatggctacaatttctagaggaagctgcttgcattttcgaacaatttctttcg |
5413481 |
T |
|
| Q |
118 |
acatggactgaagctctggtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcat |
217 |
Q |
| |
|
| | ||||||||| | |||||| | |||| |||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
5413480 |
atacatcctgaagctccgatggacaattcccaccaagttcaaatccaaacaccttcttgcagtaaagttcccatgctttgtttggaggcaaaagttgcag |
5413381 |
T |
|
| Q |
218 |
gttaagaacatggactagaaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatg |
317 |
Q |
| |
|
||| |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||| ||||||||| || ||||| |
|
|
| T |
5413380 |
gttgtgaacatatactagaaaggattttttgaaaaaatccgcaacttgcatcattctagtggtgattatgatcctactacctttattgtttttaggcatc |
5413281 |
T |
|
| Q |
318 |
gcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatgaaatacctcttat |
384 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5413280 |
gcaaattcaacctggtcagagaaatcttgttgccatacatcatcaaagaatatcaaatacctcttat |
5413214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 2749689 - 2749323
Alignment:
| Q |
18 |
ttttgccattcagttcttgttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttag |
117 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| || ||||||||| ||||||||||| ||||||||| || |||| ||| ||||||||||||| | |
|
|
| T |
2749689 |
ttttgccattcaatcattgttttagattttgttgaaagtaaaccaccaatagctacaattgctagaggtagctgcctgcacttttgaacaatttcttttg |
2749590 |
T |
|
| Q |
118 |
acatggactgaagctctggtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcat |
217 |
Q |
| |
|
||| | || ||| |||| |||||| || ||| |||| ||| |||| ||| || |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2749589 |
acacagcctcaagttctgatggacaatgtccaccaagctcatatctaaatactctcttgcagaaaagttcccatgctttgtttggaggcaaaagttgcag |
2749490 |
T |
|
| Q |
218 |
gttaagaacatggactagaaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatg |
317 |
Q |
| |
|
||| ||| ||| |||||||||||| ||||||||||||||||||| ||||||||| ||||| || || |||||||||| ||||||||||||||||||| |
|
|
| T |
2749489 |
gttgtgaatatgagttagaaaggattttttgaaaaaatctgcaacatacatcattctagtggtgatgataatcctactacctttattgttatttggcatg |
2749390 |
T |
|
| Q |
318 |
gcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatgaaatacctcttat |
384 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
2749389 |
gcaaattgaacctggtccgcaaaatcttcttgccatacgtcatcaaagaatatcaaatacctcttat |
2749323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 3220933 - 3220984
Alignment:
| Q |
36 |
gttttagattttgttgaaaatagaccaccaatggctacaattgccagaggta |
87 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||||||||| |||| |
|
|
| T |
3220933 |
gttttagattttgttgataaaagaccaccaatggccacaattgccagtggta |
3220984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 3356828 - 3356914
Alignment:
| Q |
36 |
gttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttagacatg |
122 |
Q |
| |
|
||||||| |||||| || || |||||||||||||| ||||| ||||| ||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
3356828 |
gttttagcttttgtcgacaaaagaccaccaatggccacaatagccagtggtagccctccacatttttgaacaatttcattagacatg |
3356914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 22648017 - 22648075
Alignment:
| Q |
44 |
ttttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttc |
102 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||| |||| | ||||||||||| |
|
|
| T |
22648017 |
ttttgtagacaatagaccaccaatggcaacaattgccagcggtaaacccttgcattttc |
22648075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 3201491 - 3201382
Alignment:
| Q |
165 |
aatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcatgttaagaacatggactagaaaggatttcttgaaaaaatctgcaacat |
264 |
Q |
| |
|
||||| || ||||| || |||||||| |||||||||||||||||| |||| | || ||| ||| || ||||| |||||||| ||| | || || |||| |
|
|
| T |
3201491 |
aatgccttgttgcaaaacagttcccacgctttgtttggaggcaaaggttgtaggtggtgaatatgaacaagaaaagatttcttaaaatattcagctacat |
3201392 |
T |
|
| Q |
265 |
gcatcattct |
274 |
Q |
| |
|
|||||||||| |
|
|
| T |
3201391 |
gcatcattct |
3201382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 3310095 - 3310147
Alignment:
| Q |
36 |
gttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtag |
88 |
Q |
| |
|
||||||| ||||||||| || ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
3310095 |
gttttagcttttgttgacaaaagacctccaatggccacaattgccagtggtag |
3310147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 34 - 384
Target Start/End: Original strand, 5612 - 5962
Alignment:
| Q |
34 |
ttgttttagattttgttgaaaatagaccaccaatggctacaattgccagaggtagccgcttgcattttcgaacaatttctttagacatggactgaagctc |
133 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| || | | || |||||| |
|
|
| T |
5612 |
ttgttttagattttgttgaaagtagaccaccaatggctacaattgcaagaggtagctgcttgcattttttaacaatttcttttgatacagcctcaagctc |
5711 |
T |
|
| Q |
134 |
tggtggacattgcccatcaagttcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcatgttaagaacatggact |
233 |
Q |
| |
|
||||||| |||||| || |||||||||| ||| |||| |||||||||||||||||| |||||||||||||||| ||||||| || ||||||| ||| |
|
|
| T |
5712 |
aagtggacaatgcccaccaggttcaaatctaaatacttttttgcagaagagttcccatactttgtttggaggcaagagttgcagtttgtgaacatgaact |
5811 |
T |
|
| Q |
234 |
agaaaggatttcttgaaaaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatggcaaattcaacctggt |
333 |
Q |
| |
|
| |||||||||||||||||| || |||||| |||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
5812 |
ataaaggatttcttgaaaaattcggcaacaagcatcattcttgtggtgattataatcctactacctttattgttattaggcatggcaaattcaacctggt |
5911 |
T |
|
| Q |
334 |
cggaaaaatcttcttgccatacatcatcaaagaatatgaaatacctcttat |
384 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5912 |
cagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttat |
5962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 11116893 - 11116930
Alignment:
| Q |
44 |
ttttgttgaaaatagaccaccaatggctacaattgcca |
81 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
11116893 |
ttttgttgaaagtaggccaccaatggctacaattgcca |
11116930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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