View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2004_high_10 (Length: 238)
Name: NF2004_high_10
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2004_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 14549107 - 14548891
Alignment:
| Q |
1 |
ctcatcagctacaccctcacctatatggatcattgactttggagcctcccaatcacatacatcttgtctaattttaaatcttttgtatctttacatccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14549107 |
ctcatcagctacaccctcacctatatggatcattgactttggagcctcccaatcacatacatcttgtctaattttaaatcttttgtatctttacatccca |
14549008 |
T |
|
| Q |
101 |
cttcatctgtgccagccatgattgctgatgacactcttgctcaaactttgccttttccaagaataacattatactattatcttgttaccccttcttgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14549007 |
tttcatctgtgccagccatgattgctgatgacactcttgctcaaactttactttttccaagaataacattatac---tatcttgttaccccttcttgtca |
14548911 |
T |
|
| Q |
201 |
ctcataaaacatgtcgctac |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
14548910 |
ctcataaaacatgtcgctac |
14548891 |
T |
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