View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2004_high_11 (Length: 238)
Name: NF2004_high_11
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2004_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 30730461 - 30730593
Alignment:
| Q |
26 |
catcatcataatcatgctaaaaggtatatttcgaagagataagtacagcgagttgtatatctaaacggcaagaaaaatgaaataaatatgcatggttg-n |
124 |
Q |
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| T |
30730461 |
catcatcataatcatgctaaaaggtatatttcgaagagataagtacagcgatttgtatatctaaacggcaagaaaaatgaaatcaatatgcatggttgaa |
30730560 |
T |
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| Q |
125 |
nnnnnnntagtataatgaaaagagaatatacaa |
157 |
Q |
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| T |
30730561 |
aaaaaaatagtataatgaaaagagaatatacaa |
30730593 |
T |
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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 30730612 - 30730658
Alignment:
| Q |
187 |
atagacaaataataatgaaaaatgaaatgggtttgtatattcttgga |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30730612 |
atagacaaataataatgaaaaatgaaatgggtttgtatatacttgga |
30730658 |
T |
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