View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2004_high_2 (Length: 457)
Name: NF2004_high_2
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2004_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 122 - 454
Target Start/End: Complemental strand, 12541067 - 12540735
Alignment:
| Q |
122 |
agctagacccatattattatcaggaaagctaaggtcaagcaagaagacacatgaaataaatataatcatcataattaacctaagtaataatgattttcca |
221 |
Q |
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| T |
12541067 |
agctagacccatattattatcaggaaagctaaggtcaagcaagaacacacatgaaataaatataatcataataattaacctaagtaataatgattttcca |
12540968 |
T |
|
| Q |
222 |
gaaaacaaacagaaaatctcaaactcaactcttccacctttcttgtaactttaactgttccaccattgtatagtccaccaaccacggattgacaactagc |
321 |
Q |
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| T |
12540967 |
gaaaacaaacagaaaatctcaaactcaactcttccatctttcttgtaactttaactgttccaccattgtatagtccaccaaccacggattgacaactagc |
12540868 |
T |
|
| Q |
322 |
aagatcaggtttgacaccgcgttttatcagaacagcaactgctcttttagcagctgtcacctcttgttctgtaacaaatttagcagttttcacatcttgt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12540867 |
aagatcaggtttgacaccgcgttttatcagaacagcaactgctcttttagcagctgtcacctcttgttctgtaacaaatttagcagctttcacatcttgt |
12540768 |
T |
|
| Q |
422 |
atatgttctgtatctaaagcacctatgattctt |
454 |
Q |
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| T |
12540767 |
atatgttctgtatctaaagcaccgatgtttctt |
12540735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 12541780 - 12541699
Alignment:
| Q |
17 |
acatagtacagcaaaacagacatgcttgcatgcgtgaacaattttaggatcaatattaaagatgttagagttatcttcgtaa |
98 |
Q |
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| T |
12541780 |
acatagtacagcaaaacagacatgcttgcatgcgtgaacaattttaggatcaatattaaagatgttagagttatcttcgtaa |
12541699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 394
Target Start/End: Original strand, 12535197 - 12535350
Alignment:
| Q |
241 |
caaactcaactcttccacctttcttgtaactttaactgttccaccattgtatagtccaccaaccacggattgacaactagcaagatcaggtttgacaccg |
340 |
Q |
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|||||||| ||||||||| ||||||| ||| |||||| ||||||| |||||||||||||||||||| |||||| | ||||| |||| ||||| |||||| |
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| T |
12535197 |
caaactcagctcttccacttttcttgcaaccttaactcttccacctttgtatagtccaccaaccacagattgatagctagcgagatgaggttggacacca |
12535296 |
T |
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| Q |
341 |
cgttttatcagaacagcaactgctcttttagcagctgtcacctcttgttctgta |
394 |
Q |
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| T |
12535297 |
cgttttatcagcacacacaaggctcgtttagcagctttgacctcatgttctgta |
12535350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 274 - 396
Target Start/End: Original strand, 12532769 - 12532893
Alignment:
| Q |
274 |
aactgttccaccattgtatagtccaccaaccacggattgacaactagcaagatcaggtttgacaccgcgttttatcagaacagcaactgctc--ttttag |
371 |
Q |
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|||| ||||||| ||| | || |||||| |||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
12532769 |
aactcttccacctttggacaggccaccactcacggattgataactagcaagattaggtttgacaccgcgttttatcagcacagctactgctcttttttag |
12532868 |
T |
|
| Q |
372 |
cagctgtcacctcttgttctgtaac |
396 |
Q |
| |
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|| | |||||||||||||| |||| |
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| T |
12532869 |
cacttttcacctcttgttctttaac |
12532893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 12538578 - 12538623
Alignment:
| Q |
304 |
cacggattgacaactagcaagatcaggtttgacaccgcgttttatc |
349 |
Q |
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| T |
12538578 |
cacggattgataactagcaagatcaggtttgacaccgcgttttatc |
12538623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 36007873 - 36007986
Alignment:
| Q |
147 |
aagctaaggtcaagcaagaagacacatgaaataaatataatcatcataattaacctaagtaataatgattttccagaaaacaaacagaaaatctcaaact |
246 |
Q |
| |
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|||||||||||||||||||| || | ||||||||||||||||| ||||||||||| || |||||||||||||| |||||||| |||||||||||||| |
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| T |
36007873 |
aagctaaggtcaagcaagaacacccttgaaataaatataatcaaaataattaacctcag---taatgattttccag-aaacaaacggaaaatctcaaact |
36007968 |
T |
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| Q |
247 |
caactcttccacctttct |
264 |
Q |
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|||||||||||||||||| |
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| T |
36007969 |
caactcttccacctttct |
36007986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 253 - 396
Target Start/End: Original strand, 384373 - 384516
Alignment:
| Q |
253 |
ttccacctttcttgtaactttaactgttccaccattgtatagtccaccaaccacggattgacaactagcaagatcaggtttgacaccgcgttttatcaga |
352 |
Q |
| |
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|||||||||||||| || |||||| ||||||| ||| | |||||||||| ||| || |||||| |||||||| |||||||||||||||||| ||||| |
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| T |
384373 |
ttccacctttcttgcaatcttaactcttccacctttgaacagtccaccaatcacagactgacaagcagcaagattaggtttgacaccgcgtttaatcagc |
384472 |
T |
|
| Q |
353 |
acagcaactgctcttttagcagctgtcacctcttgttctgtaac |
396 |
Q |
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||||| || ||||||||||||| | | ||||||||||||||||| |
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| T |
384473 |
acagctacggctcttttagcagatttgacctcttgttctgtaac |
384516 |
T |
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