View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2004_high_8 (Length: 241)
Name: NF2004_high_8
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2004_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43815483 - 43815258
Alignment:
| Q |
1 |
cacaacatcaattgatcctgctcttcatggaaaatttgaggtagaagaagcatcaaatgctctacaagctgcacttctttgtacacaatcatctcctacc |
100 |
Q |
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| T |
43815483 |
cacaacatcaattgatcctgctcttcatggaaaatttgaggtagaagaagcatcaaatgctctacaagctgcacttctttgtacacaatcatctcctacc |
43815384 |
T |
|
| Q |
101 |
caaagaccatccatgtcagaagtagttcaaatgctaacnnnnnnngactacaaaattcccaccccaaaacaacaaccattgctcaacaaccatttgagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43815383 |
caaagaccatccatgtcagaagtagttcaaatgctaacaaaaaaagactacaaaattcccaccccaaaacaacaaccattgctcaacaaccatttgagga |
43815284 |
T |
|
| Q |
201 |
atatgtcaaatggtcttgcaagtaca |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43815283 |
atatgtcaaatggtcttgcaagtaca |
43815258 |
T |
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