View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2004_high_9 (Length: 239)

Name: NF2004_high_9
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2004_high_9
NF2004_high_9
[»] chr8 (36 HSPs)
chr8 (1-153)||(41680115-41680267)
chr8 (18-153)||(22474674-22474809)
chr8 (19-153)||(21579206-21579340)
chr8 (19-153)||(12037164-12037298)
chr8 (6-150)||(17978403-17978547)
chr8 (19-153)||(29762868-29763002)
chr8 (18-142)||(36405131-36405255)
chr8 (5-153)||(22208186-22208335)
chr8 (18-109)||(20879435-20879525)
chr8 (68-204)||(21697509-21697643)
chr8 (66-184)||(22966698-22966815)
chr8 (19-153)||(22258306-22258441)
chr8 (18-80)||(20517035-20517097)
chr8 (18-123)||(4380616-4380722)
chr8 (7-82)||(12577868-12577943)
chr8 (131-178)||(36305897-36305944)
chr8 (1-71)||(19880822-19880892)
chr8 (1-58)||(23479095-23479152)
chr8 (3-71)||(26454707-26454776)
chr8 (135-177)||(36732600-36732642)
chr8 (5-58)||(17158949-17159002)
chr8 (130-177)||(22610377-22610424)
chr8 (1-43)||(22237032-22237074)
chr8 (135-177)||(23884063-23884105)
chr8 (60-123)||(18816337-18816400)
chr8 (18-49)||(19700183-19700214)
chr8 (18-49)||(22708323-22708354)
chr8 (18-49)||(23419463-23419494)
chr8 (19-70)||(37516608-37516659)
chr8 (4-42)||(3273919-3273957)
chr8 (19-123)||(21514638-21514743)
chr8 (114-176)||(22483675-22483737)
chr8 (5-58)||(16198849-16198902)
chr8 (19-71)||(13660854-13660906)
chr8 (19-71)||(13719497-13719549)
chr8 (172-204)||(17290625-17290657)
[»] scaffold0371 (2 HSPs)
scaffold0371 (18-153)||(10445-10580)
scaffold0371 (18-93)||(3853-3927)
[»] chr4 (32 HSPs)
chr4 (18-153)||(12623234-12623369)
chr4 (18-153)||(19565917-19566052)
chr4 (18-151)||(46741119-46741252)
chr4 (18-153)||(40230224-40230359)
chr4 (18-153)||(33243293-33243428)
chr4 (18-153)||(44023602-44023737)
chr4 (60-153)||(33186820-33186913)
chr4 (18-171)||(18462923-18463076)
chr4 (18-171)||(14477532-14477684)
chr4 (66-204)||(20150694-20150830)
chr4 (18-81)||(26921508-26921571)
chr4 (19-153)||(12424290-12424427)
chr4 (138-204)||(3837999-3838064)
chr4 (138-204)||(15239935-15240000)
chr4 (18-115)||(13165089-13165185)
chr4 (1-69)||(10057663-10057731)
chr4 (1-72)||(15008961-15009033)
chr4 (33-81)||(45314097-45314145)
chr4 (18-111)||(9638970-9639063)
chr4 (1-71)||(40620531-40620602)
chr4 (18-126)||(2424386-2424495)
chr4 (1-70)||(14186959-14187028)
chr4 (99-157)||(16296785-16296844)
chr4 (135-177)||(9622381-9622423)
chr4 (18-70)||(51993561-51993614)
chr4 (60-123)||(14631082-14631145)
chr4 (18-93)||(16296915-16296991)
chr4 (18-49)||(15613112-15613143)
chr4 (18-123)||(25513798-25513904)
chr4 (5-70)||(26014285-26014350)
chr4 (18-71)||(27996791-27996844)
chr4 (172-204)||(11153814-11153846)
[»] chr6 (30 HSPs)
chr6 (5-153)||(23431433-23431581)
chr6 (18-153)||(31734625-31734760)
chr6 (5-152)||(25921920-25922067)
chr6 (18-153)||(7217243-7217377)
chr6 (18-153)||(18455072-18455207)
chr6 (18-153)||(22557166-22557300)
chr6 (21-153)||(32259763-32259895)
chr6 (18-177)||(1818846-1819005)
chr6 (18-153)||(23658006-23658142)
chr6 (18-94)||(25601329-25601406)
chr6 (18-80)||(31166231-31166293)
chr6 (1-69)||(27852208-27852276)
chr6 (1-69)||(28103430-28103498)
chr6 (1-71)||(15173435-15173506)
chr6 (18-80)||(18459296-18459359)
chr6 (140-201)||(3851134-3851194)
chr6 (1-69)||(20733226-20733294)
chr6 (18-123)||(15998836-15998942)
chr6 (18-79)||(13285739-13285801)
chr6 (173-217)||(9548741-9548786)
chr6 (1-49)||(27329963-27330011)
chr6 (1-49)||(27390703-27390751)
chr6 (18-49)||(12041619-12041650)
chr6 (1-71)||(15900636-15900707)
chr6 (114-157)||(29045178-29045221)
chr6 (60-102)||(18982540-18982582)
chr6 (18-79)||(35057535-35057597)
chr6 (18-70)||(24550167-24550220)
chr6 (176-204)||(19769095-19769123)
chr6 (18-70)||(22375799-22375851)
[»] scaffold0020 (1 HSPs)
scaffold0020 (18-153)||(174139-174274)
[»] scaffold0011 (1 HSPs)
scaffold0011 (18-153)||(33372-33507)
[»] chr3 (32 HSPs)
chr3 (18-153)||(53646058-53646193)
chr3 (26-153)||(54330314-54330441)
chr3 (18-153)||(14152398-14152534)
chr3 (18-115)||(21845651-21845747)
chr3 (18-115)||(48631288-48631384)
chr3 (19-153)||(5215564-5215699)
chr3 (135-223)||(24177885-24177973)
chr3 (18-157)||(3160626-3160764)
chr3 (18-108)||(15566706-15566797)
chr3 (5-82)||(50350802-50350881)
chr3 (1-71)||(16979911-16979982)
chr3 (28-123)||(12155034-12155129)
chr3 (18-123)||(12150947-12151052)
chr3 (1-43)||(14967212-14967254)
chr3 (1-39)||(37641486-37641524)
chr3 (1-81)||(36528856-36528937)
chr3 (1-49)||(3263945-3263993)
chr3 (1-69)||(52988840-52988908)
chr3 (18-123)||(17208471-17208577)
chr3 (1-56)||(24177718-24177773)
chr3 (18-157)||(29907550-29907692)
chr3 (18-157)||(29948716-29948858)
chr3 (18-157)||(29997870-29998012)
chr3 (135-177)||(3527271-3527313)
chr3 (3-49)||(15446852-15446898)
chr3 (172-221)||(30993297-30993347)
chr3 (1-39)||(52465353-52465391)
chr3 (172-223)||(3593054-3593106)
chr3 (18-49)||(6003207-6003238)
chr3 (114-157)||(45803432-45803475)
chr3 (4-70)||(46752107-46752173)
chr3 (5-49)||(11563747-11563791)
[»] chr1 (36 HSPs)
chr1 (18-153)||(14792562-14792697)
chr1 (18-169)||(38887086-38887237)
chr1 (18-153)||(44892367-44892502)
chr1 (19-153)||(41225454-41225588)
chr1 (19-153)||(41226707-41226841)
chr1 (18-153)||(18121521-18121656)
chr1 (66-204)||(40390019-40390155)
chr1 (22-99)||(21243761-21243838)
chr1 (18-117)||(39061275-39061373)
chr1 (1-71)||(50001475-50001546)
chr1 (20-129)||(11808192-11808288)
chr1 (18-115)||(21188033-21188129)
chr1 (131-178)||(45499433-45499480)
chr1 (1-69)||(21995646-21995714)
chr1 (1-49)||(51336501-51336549)
chr1 (1-71)||(29763614-29763685)
chr1 (6-71)||(46197732-46197798)
chr1 (1-49)||(12327725-12327773)
chr1 (19-102)||(22145666-22145750)
chr1 (1-123)||(24007207-24007330)
chr1 (99-157)||(8306518-8306577)
chr1 (60-115)||(24719552-24719606)
chr1 (18-123)||(28476733-28476839)
chr1 (135-177)||(34392660-34392702)
chr1 (18-81)||(20708058-20708121)
chr1 (19-71)||(21708149-21708201)
chr1 (19-71)||(21712692-21712744)
chr1 (114-157)||(6834083-6834126)
chr1 (60-111)||(8276031-8276081)
chr1 (18-49)||(24727389-24727420)
chr1 (60-111)||(38056714-38056764)
chr1 (18-56)||(45755535-45755573)
chr1 (60-93)||(50544849-50544882)
chr1 (176-204)||(12786237-12786265)
chr1 (172-223)||(18513880-18513932)
chr1 (125-157)||(21239149-21239181)
[»] scaffold0630 (1 HSPs)
scaffold0630 (18-152)||(8982-9116)
[»] chr7 (40 HSPs)
chr7 (19-153)||(14160856-14160990)
chr7 (18-153)||(14317990-14318125)
chr7 (18-153)||(15119306-15119441)
chr7 (33-153)||(9743093-9743213)
chr7 (19-152)||(43276744-43276877)
chr7 (125-221)||(16250334-16250430)
chr7 (18-133)||(8513752-8513868)
chr7 (18-93)||(42565832-42565907)
chr7 (18-80)||(33060429-33060491)
chr7 (1-70)||(30820133-30820202)
chr7 (18-121)||(8488093-8488197)
chr7 (139-180)||(15700854-15700895)
chr7 (18-123)||(4690662-4690768)
chr7 (1-71)||(29052164-29052235)
chr7 (1-39)||(19485955-19485993)
chr7 (4-71)||(16549990-16550058)
chr7 (4-71)||(16615604-16615672)
chr7 (131-178)||(13744621-13744668)
chr7 (7-70)||(36685134-36685197)
chr7 (135-177)||(8930883-8930925)
chr7 (18-75)||(21661252-21661309)
chr7 (18-115)||(43745612-43745709)
chr7 (1-43)||(46579741-46579783)
chr7 (18-71)||(15203178-15203231)
chr7 (18-70)||(36704570-36704623)
chr7 (135-175)||(25943163-25943203)
chr7 (18-49)||(10658850-10658881)
chr7 (19-70)||(14980670-14980721)
chr7 (19-70)||(15410146-15410197)
chr7 (135-177)||(33556221-33556264)
chr7 (135-177)||(18570540-18570581)
chr7 (18-115)||(20252181-20252278)
chr7 (5-93)||(19195589-19195677)
chr7 (140-177)||(36300761-36300798)
chr7 (18-123)||(47095399-47095505)
chr7 (114-170)||(13315176-13315232)
chr7 (60-123)||(15575691-15575754)
chr7 (60-123)||(16186860-16186923)
chr7 (18-81)||(16250221-16250285)
chr7 (176-204)||(18147669-18147697)
[»] chr5 (25 HSPs)
chr5 (18-152)||(26762321-26762455)
chr5 (18-178)||(1626917-1627077)
chr5 (22-153)||(8833209-8833340)
chr5 (18-153)||(14025806-14025941)
chr5 (19-153)||(8503888-8504022)
chr5 (18-153)||(26749950-26750084)
chr5 (66-204)||(24068098-24068234)
chr5 (18-123)||(21504087-21504192)
chr5 (1-71)||(17011727-17011798)
chr5 (18-123)||(18744821-18744927)
chr5 (1-43)||(10774646-10774688)
chr5 (18-76)||(21404080-21404138)
chr5 (1-70)||(21554285-21554354)
chr5 (1-70)||(21556931-21557000)
chr5 (23-82)||(21398800-21398860)
chr5 (18-93)||(6551289-6551365)
chr5 (1-49)||(31456982-31457030)
chr5 (19-123)||(23199207-23199312)
chr5 (18-71)||(21914491-21914544)
chr5 (1-69)||(26832623-26832691)
chr5 (139-178)||(22111870-22111909)
chr5 (18-71)||(25249827-25249881)
chr5 (18-71)||(25313611-25313665)
chr5 (139-178)||(21398766-21398806)
chr5 (1-49)||(30616636-30616684)
[»] scaffold0401 (1 HSPs)
scaffold0401 (18-153)||(8739-8874)
[»] scaffold0063 (1 HSPs)
scaffold0063 (18-153)||(62636-62771)
[»] scaffold0039 (1 HSPs)
scaffold0039 (18-153)||(9927-10062)
[»] scaffold0439 (1 HSPs)
scaffold0439 (18-153)||(4339-4474)
[»] chr2 (27 HSPs)
chr2 (11-153)||(23968615-23968757)
chr2 (19-153)||(14179728-14179862)
chr2 (23-153)||(24717937-24718067)
chr2 (19-153)||(14183466-14183600)
chr2 (18-98)||(19647206-19647286)
chr2 (18-175)||(28652551-28652707)
chr2 (23-123)||(25584267-25584367)
chr2 (18-170)||(20005970-20006121)
chr2 (19-81)||(12626427-12626489)
chr2 (18-93)||(45535903-45535978)
chr2 (1-69)||(34858174-34858242)
chr2 (1-69)||(34873236-34873304)
chr2 (1-71)||(21080951-21081022)
chr2 (1-49)||(357903-357951)
chr2 (18-115)||(21315475-21315572)
chr2 (18-115)||(21335265-21335362)
chr2 (1-37)||(34491222-34491258)
chr2 (5-49)||(40912342-40912386)
chr2 (99-157)||(149585-149644)
chr2 (1-71)||(21915623-21915694)
chr2 (1-71)||(25184188-25184259)
chr2 (5-45)||(27484475-27484515)
chr2 (114-157)||(12626527-12626570)
chr2 (18-49)||(25046140-25046171)
chr2 (60-123)||(21369240-21369303)
chr2 (18-70)||(24792758-24792810)
chr2 (135-178)||(25584229-25584273)
[»] scaffold0048 (1 HSPs)
scaffold0048 (18-153)||(56894-57026)
[»] scaffold0385 (1 HSPs)
scaffold0385 (18-153)||(263-398)
[»] scaffold0217 (1 HSPs)
scaffold0217 (18-171)||(28614-28766)
[»] scaffold0092 (1 HSPs)
scaffold0092 (18-171)||(38441-38594)
[»] scaffold1939 (1 HSPs)
scaffold1939 (18-157)||(41-180)
[»] scaffold0121 (1 HSPs)
scaffold0121 (71-149)||(20121-20199)
[»] scaffold0337 (1 HSPs)
scaffold0337 (18-115)||(3161-3257)
[»] scaffold0058 (2 HSPs)
scaffold0058 (18-115)||(59655-59751)
scaffold0058 (1-58)||(6381-6438)
[»] scaffold0017 (1 HSPs)
scaffold0017 (18-115)||(23570-23666)
[»] scaffold0120 (1 HSPs)
scaffold0120 (66-184)||(29199-29316)
[»] scaffold0139 (2 HSPs)
scaffold0139 (18-123)||(40160-40268)
scaffold0139 (4-37)||(23568-23601)
[»] scaffold0431 (1 HSPs)
scaffold0431 (19-153)||(5548-5685)
[»] scaffold0247 (1 HSPs)
scaffold0247 (60-204)||(943-1086)
[»] scaffold0261 (1 HSPs)
scaffold0261 (18-114)||(6419-6514)
[»] scaffold0108 (1 HSPs)
scaffold0108 (18-153)||(6334-6471)
[»] scaffold1437 (1 HSPs)
scaffold1437 (46-139)||(321-414)
[»] scaffold0577 (1 HSPs)
scaffold0577 (1-70)||(9060-9129)
[»] scaffold0394 (1 HSPs)
scaffold0394 (18-115)||(7513-7609)
[»] scaffold0165 (2 HSPs)
scaffold0165 (18-115)||(31886-31982)
scaffold0165 (19-80)||(32039-32100)
[»] scaffold1160 (1 HSPs)
scaffold1160 (72-152)||(603-683)
[»] scaffold0153 (2 HSPs)
scaffold0153 (1-69)||(5299-5367)
scaffold0153 (1-69)||(12319-12387)
[»] scaffold0125 (1 HSPs)
scaffold0125 (18-82)||(28540-28604)
[»] scaffold0021 (3 HSPs)
scaffold0021 (18-98)||(17078-17158)
scaffold0021 (18-98)||(26609-26689)
scaffold0021 (103-153)||(169358-169408)
[»] scaffold1102 (1 HSPs)
scaffold1102 (18-97)||(1950-2029)
[»] scaffold0059 (1 HSPs)
scaffold0059 (18-80)||(49720-49782)
[»] scaffold1800 (1 HSPs)
scaffold1800 (18-157)||(522-660)
[»] scaffold0138 (2 HSPs)
scaffold0138 (1-71)||(21096-21167)
scaffold0138 (1-71)||(34111-34182)
[»] scaffold0004 (3 HSPs)
scaffold0004 (131-178)||(75828-75875)
scaffold0004 (131-174)||(72982-73025)
scaffold0004 (135-178)||(110216-110259)
[»] scaffold0213 (1 HSPs)
scaffold0213 (18-115)||(19163-19260)
[»] scaffold0515 (1 HSPs)
scaffold0515 (4-71)||(5028-5096)
[»] scaffold0306 (1 HSPs)
scaffold0306 (4-71)||(5028-5096)
[»] scaffold0203 (1 HSPs)
scaffold0203 (5-123)||(17926-18045)
[»] scaffold0057 (1 HSPs)
scaffold0057 (4-71)||(69838-69906)
[»] scaffold0436 (1 HSPs)
scaffold0436 (5-71)||(8959-9026)
[»] scaffold0145 (1 HSPs)
scaffold0145 (66-109)||(8086-8129)
[»] scaffold0031 (1 HSPs)
scaffold0031 (135-177)||(127461-127503)
[»] scaffold1256 (1 HSPs)
scaffold1256 (18-93)||(2199-2275)
[»] scaffold0676 (2 HSPs)
scaffold0676 (100-175)||(2710-2786)
scaffold0676 (18-93)||(2858-2934)
[»] scaffold0516 (1 HSPs)
scaffold0516 (18-93)||(5304-5380)
[»] scaffold0461 (1 HSPs)
scaffold0461 (135-202)||(12354-12421)
[»] scaffold0094 (1 HSPs)
scaffold0094 (172-223)||(48236-48288)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-71)||(29198-29269)
[»] scaffold0819 (1 HSPs)
scaffold0819 (1-43)||(5394-5436)
[»] scaffold0071 (1 HSPs)
scaffold0071 (3-49)||(15294-15340)
[»] scaffold0878 (1 HSPs)
scaffold0878 (18-123)||(3421-3527)
[»] scaffold0379 (2 HSPs)
scaffold0379 (18-71)||(3892-3945)
scaffold0379 (139-178)||(10840-10879)
[»] scaffold0151 (1 HSPs)
scaffold0151 (18-71)||(31108-31161)
[»] scaffold0046 (1 HSPs)
scaffold0046 (5-58)||(21763-21816)
[»] scaffold1186 (1 HSPs)
scaffold1186 (60-123)||(1967-2030)
[»] scaffold0686 (1 HSPs)
scaffold0686 (2-34)||(1475-1507)
[»] scaffold0462 (1 HSPs)
scaffold0462 (1-49)||(11245-11293)
[»] scaffold0338 (1 HSPs)
scaffold0338 (18-70)||(10761-10813)
[»] scaffold0174 (2 HSPs)
scaffold0174 (1-69)||(13639-13707)
scaffold0174 (114-168)||(11513-11567)
[»] scaffold0007 (1 HSPs)
scaffold0007 (60-157)||(16461-16560)
[»] scaffold0005 (1 HSPs)
scaffold0005 (60-123)||(186238-186301)
[»] scaffold1434 (1 HSPs)
scaffold1434 (18-49)||(1358-1389)
[»] scaffold0671 (1 HSPs)
scaffold0671 (18-49)||(4962-4993)
[»] scaffold0083 (1 HSPs)
scaffold0083 (5-71)||(1936-2003)
[»] scaffold0077 (1 HSPs)
scaffold0077 (18-49)||(5972-6003)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-49)||(398584-398615)
[»] scaffold0632 (1 HSPs)
scaffold0632 (1-39)||(1197-1235)
[»] scaffold0331 (1 HSPs)
scaffold0331 (4-70)||(12100-12166)
[»] scaffold0359 (1 HSPs)
scaffold0359 (18-71)||(16333-16386)
[»] scaffold0231 (1 HSPs)
scaffold0231 (60-93)||(17563-17596)
[»] scaffold0104 (2 HSPs)
scaffold0104 (1-38)||(14990-15027)
scaffold0104 (1-38)||(17010-17047)
[»] scaffold0056 (1 HSPs)
scaffold0056 (60-93)||(18252-18285)
[»] scaffold0008 (1 HSPs)
scaffold0008 (18-71)||(135503-135556)
[»] scaffold0001 (1 HSPs)
scaffold0001 (18-71)||(499058-499111)
[»] scaffold0594 (1 HSPs)
scaffold0594 (125-157)||(2154-2186)
[»] scaffold0323 (1 HSPs)
scaffold0323 (172-223)||(16227-16279)
[»] scaffold0162 (1 HSPs)
scaffold0162 (68-123)||(23932-23987)
[»] scaffold0088 (1 HSPs)
scaffold0088 (172-223)||(35550-35602)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 41680115 - 41680267
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||    
T  41680115 accgccgatcatcaatactaaggtaaaggtgggactaaccttctttaatcataagtatgtaatcctgataaagggtttaaccttgtagttgttaataggt 41680214  T
Q  101 tttgatgttttagaattagggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||||||| ||||||||||||| ||||||||| |||| ||| ||| ||||||    
T  41680215 tttgatgttgtagaattagggtttgaaactaaaattgactgtagaaggagtag 41680267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 22474809 - 22474674
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  22474809 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaatt 22474710  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| |||||||| ||||||||||    
T  22474709 agggtttgaaactaaaattgattgtcgaaagagtag 22474674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 21579206 - 21579340
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatta 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  21579206 taaggtaagggtgtgactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaatatgttttgatgttgtagaatta 21579305  T
Q  119 gggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||||||||||||| |||||||| ||||||||||    
T  21579306 gggttcgaaactaaaattgattgtagaaagagtag 21579340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 12037164 - 12037298
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatta 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| |||||| |    
T  12037164 taaggtaagggtgggactaaccttgtttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaatagcttttgatgttgtagaatca 12037263  T
Q  119 gggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||| ||||||||| |||||||| ||||||||||    
T  12037264 gggtttgaaactaaaattgattgtagaaagagtag 12037298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 17978403 - 17978547
Alignment:
Q  6 cgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttga 105  Q
    |||||||| | |||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||    
T  17978403 cgatcatctaaactaaggtaagggtgggactaaacttctataatcataagtatgtaatcctgaaaaaggatttaaccttgtagttgttaataggttttga 17978502  T
Q  106 tgttttagaattagggttcgaaactaaagttgattgttgaaagag 150  Q
    |||| ||||||||||||| ||||||||| |||||| | |||||||    
T  17978503 tgttgtagaattagggtttgaaactaaaattgattatagaaagag 17978547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 29762868 - 29763002
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatta 118  Q
    |||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  29762868 taaggtaagggtgaaactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaataagttttgatgttgtagaatta 29762967  T
Q  119 gggttcgaaactaaagttgattgttgaaagagtag 153  Q
    | ||| ||||||||| |||||||| ||||||||||    
T  29762968 gagtttgaaactaaaattgattgtagaaagagtag 29763002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 36405131 - 36405255
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| |   |||||||||||||| |||||||||||||||||||||||||  |||||||    
T  36405131 ctaaggtaagggtgtgactaactttctttaatcataagtatgtaatccctgaaaagggtttaaccttgtagttgttaataggttttgatgtcgtagaatt 36405230  T
Q  118 agggttcgaaactaaagttgattgt 142  Q
    | |||| ||||||||| ||||||||    
T  36405231 atggtttgaaactaaaattgattgt 36405255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 22208335 - 22208186
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggtttt 103  Q
    ||||||||| |  |||||||||||||||||||| | |||| |||| ||  ||  | ||||||||||||||||||||||| ||||||||||||||||||||    
T  22208335 ccgatcatctaatctaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttaataggtttt 22208236  T
Q  104 gatgttttagaattagggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||||||| ||||||||| ||||| || ||||||||||    
T  22208235 gatgttgtagaattagggtttgaaactaaaattgatcgtagaaagagtag 22208186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 20879525 - 20879435
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||| | ||||||| ||||| ||||||||||||    
T  20879525 ctaaggtaagggtgggactaaccttctttaatcataagtatatggttctaaaaaagggtttaagcttgtagttattaat-ggttttgatgtt 20879435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 21697509 - 21697643
Alignment:
Q  68 aaaaagggtttaaccatgtagttgttaataggttttgatgttttaga-attagggttcgaaactaaagttgattgttgaaagagtaggtaaactattgaa 166  Q
    ||||||||||||||  ||||||||||||||||||||||||||  ||| |||||||||  | | | || || |||||||||||||||||||||| ||||||    
T  21697509 aaaaagggtttaacattgtagttgttaataggttttgatgttaaagagattagggtt--atattgaatttaattgttgaaagagtaggtaaaccattgaa 21697606  T
Q  167 ttaacgtaaggggggagtctctattcatcataagggtt 204  Q
    |||||||||| |  |||| || ||||||||||||||||    
T  21697607 ttaacgtaagtgaagagtttc-attcatcataagggtt 21697643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 22966815 - 22966698
Alignment:
Q  66 tgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aattagggttcgaaactaaagttgattgttgaaagagtaggtaaactattg 164  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||  |||||||||  | | | || || |||||||||||||||||||||  ||||    
T  22966815 tgaaaaagggtttaaccttgtagttgttaataggttttgatgttaaagcgattagggtt--atattgaatttaattgttgaaagagtaggtaaatcattg 22966718  T
Q  165 aattaacgtaaggggggagt 184  Q
    |||||||||||| |||||||    
T  22966717 aattaacgtaagtggggagt 22966698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 22258306 - 22258441
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||| ||||| | |||| |||| || |||  | ||||||  ||||||||||||||| || ||||||| ||||||||||||||| |||||||    
T  22258306 taaggtaagggtgagactagctttctctaataatgagttgtataattccaaaaaagggtttaaccttgcagttgttgataggttttgatgttgtagaatt 22258405  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||| || |||||||||  ||||||| ||||||||||    
T  22258406 aggttttgaaactaaaactgattgtagaaagagtag 22258441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 20517035 - 20517097
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaa 80  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||  |||| |||||||    
T  20517035 ctaaggtaagggtgggactaaccttctttaatcataagtatataattctagaaaatggtttaa 20517097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 4380616 - 4380722
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aa 115  Q
    |||||||||||||||||||||| |||| ||||  |||||  | ||||||||||||||||||||||| ||||||||||  || ||||||||||| ||| ||    
T  4380616 ctaaggtaagggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttgtta-gttttgatgttatagaaa 4380714  T
Q  116 ttagggtt 123  Q
    ||||||||    
T  4380715 ttagggtt 4380722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 12577943 - 12577868
Alignment:
Q  7 gatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaacc 82  Q
    ||||||||||||||||||||||||||||||||| |||| |||| |||  | | |||||| ||||||||||||||||    
T  12577943 gatcatcaatactaaggtaagggtgggactaactttctctaataatagttgtataattccgaaaaagggtttaacc 12577868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 36305944 - 36305897
Alignment:
Q  131 aaagttgattgttgaaagagtaggtaaactattgaattaacgtaaggg 178  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36305944 aaagttgattgttgaaagagtaggtaaaccattgaattaacgtaaggg 36305897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19880892 - 19880822
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||  ||||  | ||||||||||||    
T  19880892 accgccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagattttaattctgaaaa 19880822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23479152 - 23479095
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtat 58  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||    
T  23479152 accgccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtat 23479095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 26454776 - 26454707
Alignment:
Q  3 cgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||  |||||| | ||||||||||||    
T  26454776 cgccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtattttaattctgaaaa 26454707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 36732600 - 36732642
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  36732600 ttgattgttgaaagagtaggtaaaccattgaattaacgtaagg 36732642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 17158949 - 17159002
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtat 58  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||    
T  17158949 ccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtat 17159002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 22610377 - 22610424
Alignment:
Q  130 taaagttgattgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||||    
T  22610377 taaaattgattgttgaaagagtaggtaatccattgaattaacgtaagg 22610424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22237032 - 22237074
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttc 43  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  22237032 accgccgatcatcaatactaaggtaagggtgggagtaatcttc 22237074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 23884105 - 23884063
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  23884105 ttgattgttgaaagagtaggtaaatcattgaattaacgtaagg 23884063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 18816337 - 18816400
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aattagggtt 123  Q
    ||||||||||||||||||||||| ||||||||||  || ||||||||||| ||| ||||||||||    
T  18816337 taattctgaaaaagggtttaaccttgtagttgttgtta-gttttgatgttatagaaattagggtt 18816400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 19700214 - 19700183
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  19700214 ctaaggtaagggtgggactaaccttctttaat 19700183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 22708323 - 22708354
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  22708323 ctaaggtaagggtgggactaaccttctttaat 22708354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 23419494 - 23419463
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  23419494 ctaaggtaagggtgggactaaccttctttaat 23419463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 37516659 - 37516608
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    |||||||||||||||||||||||||  ||||| | ||||||| |||||||||    
T  37516659 taaggtaagggtgggactaaccttcaataatcttgagtatgtgattctgaaa 37516608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 3273957 - 3273919
Alignment:
Q  4 gccgatcatcaatactaaggtaagggtgggactaacctt 42  Q
    |||||||||| || |||||||||||||||||||||||||    
T  3273957 gccgatcatccattctaaggtaagggtgggactaacctt 3273919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 21514743 - 21514638
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aat 116  Q
    |||||||||||||||||||   |||| |||| || |||  | ||||||| ||||||||||||||| ||||||||||  || ||||||||||| ||| |||    
T  21514743 taaggtaagggtgggactagatttctctaataatgagttgtataattcttaaaaagggtttaaccttgtagttgttgtta-gttttgatgttatagaaat 21514645  T
Q  117 tagggtt 123  Q
    |||||||    
T  21514644 tagggtt 21514638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 22483737 - 22483675
Alignment:
Q  114 aattagggttcgaaactaaagttgattgttgaaagagtaggtaaactattgaattaacgtaag 176  Q
    ||||||| || ||||||||| || |||||||||||||||||||| ||  ||||||||| ||||    
T  22483737 aattaggttttgaaactaaaatttattgttgaaagagtaggtaatctgatgaattaacataag 22483675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 16198902 - 16198849
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtat 58  Q
    ||||||||||||||||||||||  ||||||||||| |||| ||||  |||||||    
T  16198902 ccgatcatcaatactaaggtaaaagtgggactaactttctctaattctaagtat 16198849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 13660854 - 13660906
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    |||||||||||||||||||||||||  ||||  | ||||||| ||||||||||    
T  13660854 taaggtaagggtgggactaaccttcaataattctgagtatgtgattctgaaaa 13660906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 13719497 - 13719549
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    |||||||||||||||||||||||||  ||||  | ||||||| ||||||||||    
T  13719497 taaggtaagggtgggactaaccttcaataattctgagtatgtgattctgaaaa 13719549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 17290657 - 17290625
Alignment:
Q  172 gtaaggggggagtctctattcatcataagggtt 204  Q
    |||||||||||||||||||||| ||||||||||    
T  17290657 gtaaggggggagtctctattcaccataagggtt 17290625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 10445 - 10580
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  10445 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaacattgtagttgttaataggttttgatgttgtagaatt 10544  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| |||||||| ||||||||||    
T  10545 agggtttgaaactaaaattgattgtagaaagagtag 10580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 3927 - 3853
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgtt 93  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||    
T  3927 ctaaggtaagggtgtgaccaaccttctttaaacataagtatgtaatcctgaaaaaggatttaa-catgtagttgtt 3853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 12623369 - 12623234
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  12623369 ctaaggtaagggtgggactaaccttctttaatcataggtatgtaatcctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaatt 12623270  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| |||||||| ||||||||||    
T  12623269 agggtttgaaactaaaattgattgtagaaagagtag 12623234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 19565917 - 19566052
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  19565917 ctaaggtaagggtggtactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaatt 19566016  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  19566017 agggtttgaaactaaaattgatcgtagaaagagtag 19566052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 46741252 - 46741119
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  46741252 ctaaggtaagtgtgggactaaccttctttaatcataaatatgtaatcctgaaaaagggtttaaccttgtagttgttaattggttttgatgttgtagaatt 46741153  T
Q  118 agggttcgaaactaaagttgattgttgaaagagt 151  Q
    |||||| ||||||||| |||||||| ||||||||    
T  46741152 agggtttgaaactaaaattgattgtagaaagagt 46741119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 40230359 - 40230224
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  40230359 ctaaggtaagggtgggactaactttctttaatcataagtatgtaatcttgaaaaagggtttaacattgtagttgttaataggttttgatgttgtagaatt 40230260  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  40230259 agggtttgaaactaaaattgatcgtagaaagagtag 40230224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 33243293 - 33243428
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||  ||||| ||||||||| | |||||||||||||||||||||||||| |||||||    
T  33243293 ctaaggtaagggtgagactaacattctttaatcataagtatgtaatcttgaaatagggtttaatcttgtagttgttaataggttttgatgttgtagaatt 33243392  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| |||||||| ||||||||||    
T  33243393 agggtttgaaactaaaattgattgtagaaagagtag 33243428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 44023602 - 44023737
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| |||| |||||| |||||||||||||| |||||||    
T  44023602 ctaaggtaagggtgcgactaaccttctttaatcataagtatgtaatcttgaaaaagggtttaaccttgtacttgttagtaggttttgatgttgtagaatt 44023701  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  44023702 agggtttgaaactaaaattgatcgtagaaagagtag 44023737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 33186913 - 33186820
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaattagggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||    
T  33186913 taattctgaaaaagggtttaaccttgtggttgttaataggttttgatgttgtagaattagggtttgaaactaaaattgattgtagaaagagtag 33186820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 18463076 - 18462923
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||   |||||||||||||| ||||||||||| || || |    
T  18463076 ctaaggtaaaggtgggactaaccttctttaatcatgagtatataattctgaaaaagggtttaattttgtagttgttaata-gttttgatgttataaaagt 18462978  T
Q  118 agggttcgaaacta-aagttgattgttgaaagagtaggtaaactattgaattaac 171  Q
      ||||  ||| || || |||||||||||||| |||||||| | | |||||||||    
T  18462977 taggttttaaattacaatttgattgttgaaagtgtaggtaatccaatgaattaac 18462923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 14477684 - 14477532
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa-t 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| | | |||||| ||| ||| ||||||||||| ||||| |    
T  14477684 ctaaggtaagggtggcactaaccttctttaatcatgagtatataattctgaaaaagggtttgatcttgtagtcgttgata-gttttgatgttatagaagt 14477586  T
Q  117 tagggttcgaaact-aaagttgattgttgaaagagtaggtaaactattgaattaac 171  Q
    |||||||  ||| | ||| |||||||||||||| |||||||| | | |||||||||    
T  14477585 tagggtt--aaattgaaatttgattgttgaaagtgtaggtaatccaatgaattaac 14477532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 20150830 - 20150694
Alignment:
Q  66 tgaaaaagggtttaaccatgtagttgttaataggttttgatgttttaga-attagggttcgaaactaaagttgattgttgaaagagtaggtaaactattg 164  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||  ||| |||||||||  | | | || || |||||||||||||||||||||| ||||    
T  20150830 tgaaaaaggatttaaccttgtagttgttaataggttttgatgttaaagagattagggtt--atattgaatttaattgttgaaagagtaggtaaaccattg 20150733  T
Q  165 aattaacgtaaggggggagtctctattcatcataagggtt 204  Q
    |||||||||||| || |||| || ||||||||||||||||    
T  20150732 aattaacgtaagtggagagtttc-attcatcataagggtt 20150694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 26921508 - 26921571
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaac 81  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26921508 ctaaggtaagggtaggactaaccttcattaatcataagtatgtaattctgaaaaagggtttaac 26921571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 12424290 - 12424427
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa--agggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    ||||||||||||||||||| | |||| |||| ||  ||  | ||||||||||||  ||||||||||  |||||||||||||||||||||||||| |||||    
T  12424290 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaaaagggtttaactttgtagttgttaataggttttgatgttgtagaa 12424389  T
Q  116 ttagggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||||| | ||||||| ||||| || ||||||||||    
T  12424390 ttagggtttggaactaaaattgatcgtagaaagagtag 12424427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 3838064 - 3837999
Alignment:
Q  138 attgttgaaagagtaggtaaactattgaattaacgtaaggggggagtctctattcatcataagggtt 204  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| || ||||||||||||||||    
T  3838064 attgttgaaagagtaggtaaaccattgaattaacgtaagtggggagtttc-attcatcataagggtt 3837999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 15239935 - 15240000
Alignment:
Q  138 attgttgaaagagtaggtaaactattgaattaacgtaaggggggagtctctattcatcataagggtt 204  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||    
T  15239935 attgttgaaaaagtaggtaaaccattgaattaacgtaaggggggagt-tttattcatcataagggtt 15240000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 13165185 - 13165089
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    ||||||||||||||||||||||||||||||||||| |||||   ||| |||||||||| ||||   | |||||||||||| ||||||||||| |||||    
T  13165185 ctaaggtaagggtgggactaaccttctttaatcatgagtataggattgtgaaaaaggggttaattttatagttgttaata-gttttgatgttatagaa 13165089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10057731 - 10057663
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||  | ||||||| ||||||||    
T  10057731 accgccgatcatcaatactaaggtaagggtgggactaaccttcaataattctgagtatgtgattctgaa 10057663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 15009033 - 15008961
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaa 72  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||| | |||||||||||||    
T  15009033 accgccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtattttaattctgaaaaa 15008961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 45314097 - 45314145
Alignment:
Q  33 gactaaccttctttaatcataagtatgtaattctgaaaaagggtttaac 81  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45314097 gactaaccttcattaatcataagtatgtaattctgaaaaagggtttaac 45314145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 9639063 - 9638970
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgtttt 111  Q
    |||||||||||||||||||| | |||| |||| || |||  ||||||||||||||||||||||||| |||||||||| |||  ||||||||||||    
T  9639063 ctaaggtaagggtgggactagctttctctaataatgagttgtgtaattctgaaaaagggtttaaccttgtagttgttgata-attttgatgtttt 9638970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40620602 - 40620531
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    |||||||||||||||||||||||||||||||||| |||| |||| ||||  |||||| | ||||||||||||    
T  40620602 accgccgatcatcaatactaaggtaagggtgggaataactttctctaattctaagtattttaattctgaaaa 40620531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 2424386 - 2424495
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aa 115  Q
    |||||||||||||| ||||||| |||| ||||  |||||  | ||||| ||||||||||||||| | ||||||||||| || ||||||||||| ||| ||    
T  2424386 ctaaggtaagggtgagactaactttctctaattctaagttgtataattttgaaaaagggtttaatcttgtagttgttatta-gttttgatgttatagaaa 2424484  T
Q  116 ttagggttcga 126  Q
    |||||||||||    
T  2424485 ttagggttcga 2424495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14187028 - 14186959
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    |||||||||||||||||||||||||||||||||| |||| |||| ||||  ||||| | | |||||||||    
T  14187028 accgccgatcatcaatactaaggtaagggtgggagtaactttctctaattctaagtgtatgattctgaaa 14186959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 16296844 - 16296785
Alignment:
Q  99 gttttgatgttttagaa-ttagggttcgaaactaaagttgattgttgaaagagtaggtaa 157  Q
    ||||||||||| ||||| |||||||| |||| |||| |||||||||||||||||||||||    
T  16296844 gttttgatgttatagaaattagggtttgaaattaaaattgattgttgaaagagtaggtaa 16296785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 9622423 - 9622381
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  9622423 ttgattgttgaaagagtaggtaatccattgaattaacgtaagg 9622381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 51993614 - 51993561
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataag-tatgtaattctgaaa 70  Q
    ||||||||||||||||||||||||||||||||  |||| | |||||||||||||    
T  51993614 ctaaggtaagggtgggactaaccttctttaattctaagttgtgtaattctgaaa 51993561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 14631145 - 14631082
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aattagggtt 123  Q
    ||||||||||||||||||||||| ||||||||||  || ||||||||||| ||| ||||||||||    
T  14631145 taattctgaaaaagggtttaaccttgtagttgttgtta-gttttgatgttatagaaattagggtt 14631082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 16296991 - 16296915
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgtt 93  Q
    |||||||||||||||||||| | |||| |||| || |||  | |||||||||||||||||||||||  |||||||||    
T  16296991 ctaaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaaagggtttaacctggtagttgtt 16296915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 15613143 - 15613112
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  15613143 ctaaggtaagggtgggactaaccttctttaat 15613112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 25513904 - 25513798
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aa 115  Q
    ||||||||| |||||||||| | |||| |||| || |||  | ||||||||||||||||||||||  ||||||||||  || ||||||||||| ||| ||    
T  25513904 ctaaggtaatggtgggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgttgtta-gttttgatgttatagaaa 25513806  T
Q  116 ttagggtt 123  Q
    ||||||||    
T  25513805 ttagggtt 25513798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 26014350 - 26014285
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    ||||||||| |  ||||||||||||||||||||||||||  ||||| | ||||||| ||| |||||    
T  26014350 ccgatcatctaatctaaggtaagggtgggactaaccttcaataatcttgagtatgtgattttgaaa 26014285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 27996844 - 27996791
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||  ||||  | ||||||| ||||||||||    
T  27996844 ctaaggtaagggtgggactaaccttcaataattctgagtatgtgattctgaaaa 27996791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 11153846 - 11153814
Alignment:
Q  172 gtaaggggggagtctctattcatcataagggtt 204  Q
    |||| ||||||||||||||||||||||||||||    
T  11153846 gtaatgggggagtctctattcatcataagggtt 11153814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 23431433 - 23431581
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttg 104  Q
    ||||||||| |  |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  23431433 ccgatcatctaatctaaggtaagcgtgggactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgctaataggttttg 23431532  T
Q  105 atgttttagaattagggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||| ||||||||||||| ||||||||| |||||||| ||||||||||    
T  23431533 atgttgtagaattagggtttgaaactaaaattgattgtagaaagagtag 23431581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 31734760 - 31734625
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||    
T  31734760 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccttgcagttgttaataggttttgatgttgtaaaatt 31734661  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  31734660 agggtttgaaactaaaattgatcgtagaaagagtag 31734625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 25922067 - 25921920
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttg 104  Q
    ||||||||| |  ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  25922067 ccgatcatctaatctaaggtaagggtgggactaaccttatttaatcataagtatgtaatcctaaaaaagggtttaaccttgtagttgttaataggttttg 25921968  T
Q  105 atgttttagaattagggttcgaaactaaagttgattgttgaaagagta 152  Q
    ||||| |||||||| |||| ||||||||| |||||||| |||||||||    
T  25921967 atgttgtagaattaaggtttgaaactaaaattgattgtagaaagagta 25921920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 7217243 - 7217377
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  7217243 ctaaggtaagggtgagactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaatagg-tttgatgttgtagaatt 7217341  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  7217342 agggtttgaaactaaaattgatcgtagaaagagtag 7217377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 18455072 - 18455207
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| || |||||||    
T  18455072 ctaaggtaagggtgggagtaaccttctttaatcataagtatgtaatcctgaaaaaggttttaaccttgtagttgttaataggttttgatattgtagaatt 18455171  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||| | ||||| || ||||||||||    
T  18455172 agggtttgaaactagaattgatagtagaaagagtag 18455207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 22557300 - 22557166
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  22557300 ctaaggtaagggtgggagtaaccttcttta-tcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaatt 22557202  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
     ||||| ||||||||| ||||| || ||||||||||    
T  22557201 cgggtttgaaactaaaattgatcgtagaaagagtag 22557166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 32259895 - 32259763
Alignment:
Q  21 aggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaattagg 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||||    
T  32259895 aggtaagggtgtgactaaccttctttaatcataagtatgtaatcctgaaaaagagtttaaccttgtagtttttaataagttttgatgttgtagaattagg 32259796  T
Q  121 gttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||| ||||||||| ||||| || ||||||||||    
T  32259795 gtttgaaactaaaattgatcgtagaaagagtag 32259763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 1819005 - 1818846
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aat 116  Q
    |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||| | |||||||||||||| ||||||||||| ||| |||    
T  1819005 ctaaggtaagggtgagactaaccttctttaatcatgagtatatagttctgaaaaagggtttaagcttgtagttgttaata-gttttgatgttatagaaat 1818907  T
Q  117 tagggttcgaaactaaagttgattgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    |||||||  |    ||| |||||||||||||||||||||||   |||||||||||||||||    
T  1818906 tagggttaaattgcaaaattgattgttgaaagagtaggtaattcattgaattaacgtaagg 1818846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 23658142 - 23658006
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaat 116  Q
    |||||||||||||||||||| | |||  |||| ||| ||  | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  23658142 ctaaggtaagggtgggactagctttccctaataataggttgtataattctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaat 23658043  T
Q  117 tagggttcgaaactaaagttgattgttgaaagagtag 153  Q
     |||||| ||||||||| |||||||| ||||||||||    
T  23658042 aagggtttgaaactaaaattgattgtagaaagagtag 23658006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 25601329 - 25601406
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaacc-atgtagttgtta 94  Q
    |||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  25601329 ctaaggtaagggagagactaaccttcattaatcataagaatgtaattctgaaaaagggtttaacctttgtagttgtta 25601406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 31166293 - 31166231
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaa 80  Q
    |||||||||||||| |||||||| ||||||||||| ||| | |||||||||||||||||||||    
T  31166293 ctaaggtaagggtgagactaaccatctttaatcatgagtctataattctgaaaaagggtttaa 31166231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27852276 - 27852208
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    ||||| |||||||||||||||||||||||||||||||||||||  | ||  ||||||||| ||||||||    
T  27852276 accgctgatcatcaatactaaggtaagggtgggactaaccttcaatcattctaagtatgtgattctgaa 27852208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28103430 - 28103498
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||  | ||||||| ||||||||    
T  28103430 accgccgatcatcaatactaaggtaagggtgggactaatcttcaataattctgagtatgtgattctgaa 28103498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15173435 - 15173506
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    |||||||||||||||||||||||||| |||||||||||| |||| ||||  |||||| | ||||||||||||    
T  15173435 accgccgatcatcaatactaaggtaatggtgggactaactttctctaattctaagtattttaattctgaaaa 15173506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 18459359 - 18459296
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctga-aaaagggtttaa 80  Q
    |||||||||||||||||||||||| |||||||||| ||||| | ||||||| ||||||||||||    
T  18459359 ctaaggtaagggtgggactaacctactttaatcatgagtatatgattctgaaaaaagggtttaa 18459296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 3851134 - 3851194
Alignment:
Q  140 tgttgaaagagtaggtaaactattgaattaacgtaaggggggagtctctattcatcataagg 201  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||| | ||||||||||||||    
T  3851134 tgttgaaagagtaggtaaaccattgaattaacgtatgggggaagt-tttattcatcataagg 3851194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20733226 - 20733294
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    ||||| ||||||||||||||||||||||||| |||||||||||  ||||  | ||||||| ||||||||    
T  20733226 accgctgatcatcaatactaaggtaagggtgagactaaccttcaataattttgagtatgtgattctgaa 20733294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 15998942 - 15998836
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aa 115  Q
    |||||||||||||| ||||||| |||| ||||  |||||  | |||||||||||||| |||||||| ||||||||||  || ||||||||||| ||| ||    
T  15998942 ctaaggtaagggtgagactaactttctctaattctaagttgtataattctgaaaaagagtttaaccttgtagttgttgtta-gttttgatgttatagaaa 15998844  T
Q  116 ttagggtt 123  Q
    ||||||||    
T  15998843 ttagggtt 15998836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 13285801 - 13285739
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtat-gtaattctgaaaaagggttta 79  Q
    ||||||||||||||||||||||||||| ||||||| ||| |  |||||||||||| |||||||    
T  13285801 ctaaggtaagggtgggactaaccttctataatcatgagtttcataattctgaaaaggggttta 13285739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 9548786 - 9548741
Alignment:
Q  173 taaggggggagtctctattcatcataagggtt-tatgatcatatgg 217  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||    
T  9548786 taaggggggagtctctgttcatcataagggttgtatgatcatatgg 9548741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27329963 - 27330011
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||| ||||    
T  27329963 accgccgatcatcaatactaaggtaagagtgtgactaactttctctaat 27330011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27390703 - 27390751
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||| ||||    
T  27390703 accgccgatcatcaatactaaggtaagagtgtgactaactttctctaat 27390751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 12041619 - 12041650
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  12041619 ctaaggtaagggtgggactaaccttctttaat 12041650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15900636 - 15900707
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    |||||||||| |||||||||||||||||||| ||| ||| |||| ||||  |||||| | ||||||||||||    
T  15900636 accgccgatcttcaatactaaggtaagggtgagaccaactttctctaattctaagtattttaattctgaaaa 15900707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 29045221 - 29045178
Alignment:
Q  114 aattagggttcgaaactaaagttgattgttgaaagagtaggtaa 157  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  29045221 aattaggttttgaaactaaaattgattgttgaaagagtaggtaa 29045178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 18982582 - 18982540
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttt 102  Q
    ||||||||||||||||||||||| ||||||||||  |||||||    
T  18982582 taattctgaaaaagggtttaaccttgtagttgttgctaggttt 18982540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 35057597 - 35057535
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtat-gtaattctgaaaaagggttta 79  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |  |||||||||||| |||||||    
T  35057597 ctaaggtaatggtgggactaatcttctataatcataagtttcataattctgaaaaggggttta 35057535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 24550167 - 24550220
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataag-tatgtaattctgaaa 70  Q
    ||||||||||||||||||||| ||||||||||  |||| | |||||||||||||    
T  24550167 ctaaggtaagggtgggactaaacttctttaattgtaagttgtgtaattctgaaa 24550220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 19769095 - 19769123
Alignment:
Q  176 ggggggagtctctattcatcataagggtt 204  Q
    |||||||||||||||||||||||||||||    
T  19769095 ggggggagtctctattcatcataagggtt 19769123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 22375799 - 22375851
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    ||||||||||||||||||||||||||  ||||  | ||||||| |||||||||    
T  22375799 ctaaggtaagggtgggactaaccttcaataattctgagtatgtgattctgaaa 22375851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 174274 - 174139
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  174274 ctaaagtaagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaatt 174175  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  174174 agggtttgaaactaaaattgatcgtagaaagagtag 174139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 33507 - 33372
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||||||||||||||| |||||||    
T  33507 ctaaggtaagggtgggactaaccttctttaatcataagtatttaatcctgaaaaagggtttaaacgtgtagttgttaataggttttgatgttgtagaatt 33408  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||||||||||| |||||    
T  33407 agggtttgaaactaaaattgattgttgaaatagtag 33372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 53646058 - 53646193
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  53646058 ctaaggtaagggtgggactaaccttctttaatcataaatatgtaatcctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaatt 53646157  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  53646158 agggtttgaaactaaaattgatcgtagaaagagtag 53646193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 54330314 - 54330441
Alignment:
Q  26 agggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaattagggttcg 125  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |    
T  54330314 agggtgggactaactttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaattagggtttg 54330413  T
Q  126 aaactaaagttgattgttgaaagagtag 153  Q
    |||||||| ||||| || ||||||||||    
T  54330414 aaactaaaattgatcgtagaaagagtag 54330441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 14152398 - 14152534
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgta--attctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    |||||||||||||||||||| | |||| |||| || ||| ||||  ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||    
T  14152398 ctaaggtaagggtgggactagctttctctaataatgagt-tgtatcattctgaaaaagggtttaaccttgtagttgttagtaggttttgatgttgtagaa 14152496  T
Q  116 ttagggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||||| ||||||||| ||||||||  |||||||||    
T  14152497 ttagggtttgaaactaaaattgattgtataaagagtag 14152534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 21845651 - 21845747
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||||||| ||||||||||| |||||    
T  21845651 ctaaggtaagggtgggactaaccttctttaatcataagtatatagttctgaaaaagggtttaagcttgtagttgttaata-gttttgatgttatagaa 21845747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 48631384 - 48631288
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| | |||||||||||||| ||||||||||| |||||    
T  48631384 ctaaggtaagggtgggactaaccttctttaatcataaatatatagttctgaaaaagggtttaagcttgtagttgttaata-gttttgatgttatagaa 48631288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 5215699 - 5215564
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||| |||| | |||| |||| || |||  | ||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  5215699 taaggtaagggtggcactagctttctctaataatgagttgtataattatgaaaaagggtttaaccttgtagttattaataggttttgatgttgtagaatt 5215600  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||||  |||||||| |||||||| || |||||||    
T  5215599 agggtttaaaactaaaattgattgtagatagagtag 5215564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 24177885 - 24177973
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaaggggggagtctctattcatcataagggtt-tatgatcatatgggtagtg 223  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||| || ||||| |||||||||||||    
T  24177885 ttgattgttgaaagagtaggcaaaccattgaattaacgtaa-gggggagtctctattcaccataaggattctatgaacatatgggtagtg 24177973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 3160626 - 3160764
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||| |||| |||||||||  |||||||||| ||| |||||||| || ||||| |    
T  3160626 ctaaggtaagggtgagactaaccttctttaatcatgagtatataattctaaaaatgggtttaactttgtagttgttgata-gttttgatattatagaaat 3160724  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtaggtaa 157  Q
      ||||  ||    || |||||||||||||||||||||||    
T  3160725 taggtttaaattgcaatttgattgttgaaagagtaggtaa 3160764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 15566797 - 15566706
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgt 108  Q
    |||| ||||||||||||||||| |||| ||||  |||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15566797 ctaaagtaagggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttaataggttttgatgt 15566706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 50350802 - 50350881
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaa--gggtttaacc 82  Q
    ||||||||| |  ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  ||||||||||    
T  50350802 ccgatcatctaatctaaggtaagggtgggactaaccttctttaatcatgagtatataattctgaaaaaaggggtttaacc 50350881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16979982 - 16979911
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||  |||||| | ||||||||||||    
T  16979982 accgtcgatcatcaatactaaggtaagggtgggactaactttctttaattctaagtattttaattctgaaaa 16979911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 12155034 - 12155129
Alignment:
Q  28 ggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa-ttagggtt 123  Q
    ||||||||||||||||||||||||||||||| |  ||||||||| || ||||    |||||||||||||| ||||||||||| ||||| ||||||||    
T  12155034 ggtgggactaaccttctttaatcataagtatatggttctgaaaagggatttaggattgtagttgttaata-gttttgatgttatagaagttagggtt 12155129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 12150947 - 12151052
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa-t 116  Q
    |||||||||| |||||||||||||||||||||||| ||||| |   |||||||| || ||||  | |||| ||||||||| ||||||||||| ||||| |    
T  12150947 ctaaggtaagagtgggactaaccttctttaatcattagtatatgtatctgaaaagggatttaggcttgtatttgttaata-gttttgatgttatagaagt 12151045  T
Q  117 tagggtt 123  Q
    |||||||    
T  12151046 tagggtt 12151052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14967254 - 14967212
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttc 43  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  14967254 accgccgatcatcaatactaaggtaagggggggactaaccttc 14967212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37641486 - 37641524
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaac 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37641486 accgccgatcatcaatactaaggtaagggtgggactaac 37641524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 36528937 - 36528856
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagt-atgtaattctgaaaaagggtttaac 81  Q
    |||||||||||||||||||||||||||||||||| |||| |||| ||||  ||||| || ||||||||| |  |||||||||    
T  36528937 accgccgatcatcaatactaaggtaagggtgggattaactttctctaattctaagtaatataattctgagattgggtttaac 36528856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3263945 - 3263993
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  3263945 accgccgatcatcaatactaaggtaagggtcggattaaccttctctaat 3263993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 52988840 - 52988908
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    ||||| ||||||||||||||||||||||||| |||||||||||  ||||  | ||||||| ||||||||    
T  52988840 accgcagatcatcaatactaaggtaagggtgagactaaccttcaataattctgagtatgtgattctgaa 52988908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 17208577 - 17208471
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aa 115  Q
    |||||||||||||||||||| | |||| |||| || |||  | ||||||||||||||| ||||||| ||||||||||  || ||||||||||| ||| ||    
T  17208577 ctaaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaaaggatttaaccttgtagttgttgtta-gttttgatgttatagaaa 17208479  T
Q  116 ttagggtt 123  Q
    ||||||||    
T  17208478 ttagggtt 17208471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24177718 - 24177773
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagt 56  Q
    ||||||||| ||||||||||||||||||||||||| ||| |||| |||| ||||||    
T  24177718 accgccgattatcaatactaaggtaagggtgggacaaactttctctaattataagt 24177773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 29907692 - 29907550
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatg-ttttag-a 114  Q
    |||||||||||||||||||| | |||||||||  |  ||  | ||||||||||||||||||||||| ||||||||||  |||| ||||||| ||  || |    
T  29907692 ctaaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagg-tttgatgattagagaa 29907594  T
Q  115 attagggttcgaaactaaagttg-attgttgaaagagtaggtaa 157  Q
    ||||||||| |||| |||| ||| ||||||||||| ||||||||    
T  29907593 attagggttagaaattaaaattgaattgttgaaagtgtaggtaa 29907550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 29948858 - 29948716
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatg-ttttag-a 114  Q
    |||||||||||||||||||| | |||||||||  |  ||  | ||||||||||||||||||||||| ||||||||||  |||| ||||||| ||  || |    
T  29948858 ctaaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagg-tttgatgattagagaa 29948760  T
Q  115 attagggttcgaaactaaagttg-attgttgaaagagtaggtaa 157  Q
    ||||||||| |||| |||| ||| ||||||||||| ||||||||    
T  29948759 attagggttagaaattaaaattgaattgttgaaagtgtaggtaa 29948716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 29998012 - 29997870
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatg-ttttag-a 114  Q
    |||||||||||||||||||| | |||||||||  |  ||  | ||||||||||||||||||||||| ||||||||||  |||| ||||||| ||  || |    
T  29998012 ctaaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagg-tttgatgattagagaa 29997914  T
Q  115 attagggttcgaaactaaagttg-attgttgaaagagtaggtaa 157  Q
    ||||||||| |||| |||| ||| ||||||||||| ||||||||    
T  29997913 attagggttagaaattaaaattgaattgttgaaagtgtaggtaa 29997870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 3527271 - 3527313
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  3527271 ttgattgttgaaagagtaggtaagccattgaattaacgtaagg 3527313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 15446852 - 15446898
Alignment:
Q  3 cgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||    
T  15446852 cgccgatcatcattactaaggtaagggtgggactaactttctctaat 15446898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 30993297 - 30993347
Alignment:
Q  172 gtaaggggggagtctctattcatcataagggtt-tatgatcatatgggtag 221  Q
    |||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  30993297 gtaaggggggagtctctattcaccataagggttgtatgaacatatgggtag 30993347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 52465353 - 52465391
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaac 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  52465353 accgccgatcatcaatactaaggtaagggtgtgactaac 52465391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 3593106 - 3593054
Alignment:
Q  172 gtaaggggggagtctctattcatcataagggtt-tatgatcatatgggtagtg 223  Q
    |||||||| |||||||||||||||||||||||| |||||||||| | ||||||    
T  3593106 gtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtg 3593054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 6003238 - 6003207
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  6003238 ctaaggtaagggtgggactaaccttctttaat 6003207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 45803432 - 45803475
Alignment:
Q  114 aattagggttcgaaactaaagttgattgttgaaagagtaggtaa 157  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  45803432 aattaggttttgaaactaaaattgattgttgaaagagtaggtaa 45803475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 46752173 - 46752107
Alignment:
Q  4 gccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    ||||||| | ||| ||||||||||||||||||||||||||  ||||  | ||||||| |||||||||    
T  46752173 gccgatcgttaatcctaaggtaagggtgggactaaccttcaataattctgagtatgtgattctgaaa 46752107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 11563791 - 11563747
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||| |  ||||||||||||||||||||||||||| ||||    
T  11563791 ccgatcatctaatctaaggtaagggtgggactaaccttctctaat 11563747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 14792562 - 14792697
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  14792562 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaataggtttcgatgttgtagaatt 14792661  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  14792662 agggtttgaaactaaaattgatcgtagaaagagtag 14792697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 38887086 - 38887237
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |||||||    
T  38887086 ctaaggtaagggtgaaactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaatcttgtagttgttaataggttttgatgttgtagaatt 38887185  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtaggtaaactattgaatta 169  Q
    |||||| |||||||||  |||| || |||||||||| ||||||  |||||||    
T  38887186 agggtttgaaactaaaagtgatcgtagaaagagtagataaactgatgaatta 38887237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 44892502 - 44892367
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||||| || |||||||    
T  44892502 ctaagttaagggtgggactaaccttctttaatcataagtatgtaatcttgaaaaaggatttaaccttgtagttgttaataggttttgatattgtagaatt 44892403  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| |||||||| ||||||||||    
T  44892402 agggtttgaaactaaaattgattgtagaaagagtag 44892367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 41225454 - 41225588
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||||| |||| |||    
T  41225454 taaggtaagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgcagttgataataggttttgatgttgtagagtta 41225553  T
Q  119 gggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||| ||||||||| |||| ||| ||||||||||    
T  41225554 gggtttgaaactaaaattgaatgtagaaagagtag 41225588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 41226707 - 41226841
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||||| |||| |||    
T  41226707 taaggtaagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgcagttgataataggttttgatgttgtagagtta 41226806  T
Q  119 gggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||| ||||||||| |||| ||| ||||||||||    
T  41226807 gggtttgaaactaaaattgaatgtagaaagagtag 41226841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 18121656 - 18121521
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  18121656 ctaaggtaagggtgggattaaccttctttaatcataagtatgtaatcctgaaaaaggatttaaccttgtagttgttaataggttttgatgttgtagaatt 18121557  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    | |||| ||||||||| ||||| ||  |||||||||    
T  18121556 aaggtttgaaactaaaattgatcgtaaaaagagtag 18121521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 40390155 - 40390019
Alignment:
Q  66 tgaaaaagggtttaaccatgtagttgttaataggttttgatgttttaga-attagggttcgaaactaaagttgattgttgaaagagtaggtaaactattg 164  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||  | | | || || |||||||||||||||||||||| ||||    
T  40390155 tgaaaaagggtttaaccttgtagttgttaataggttttgatgttaaagatattagggtt--atattgaatttaattgttgaaagagtaggtaaaccattg 40390058  T
Q  165 aattaacgtaaggggggagtctctattcatcataagggtt 204  Q
    |||||||||||| || |||| || ||||||||||||||||    
T  40390057 aattaacgtaagtggagagtttc-attcatcataagggtt 40390019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 21243761 - 21243838
Alignment:
Q  22 ggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaatagg 99  Q
    |||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  21243761 ggtaagggtgagactaaccttctttaatcataaatatgtaatcctgaaaaagggtttaaccttgtagttgttaatagg 21243838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 39061373 - 39061275
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| |||||||||| ||| ||||||||||| |||||||    
T  39061373 ctaaggtaagagtgggactaaccttctgtaatcatgagtatataattctgaaaaaaggtttaaccttgtagttgttgata-gttttgatgttatagaatt 39061275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 50001546 - 50001475
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||  |||||| | ||||||||||||    
T  50001546 accgccgatcatcaatactaaggtaagggtgggactaactttctttaattctaagtattttaattctgaaaa 50001475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 11808192 - 11808288
Alignment:
Q  20 aaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaattag 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||             ||||||| ||||||||||||||||||||||||||| ||||||||    
T  11808192 aaggtaagggtgagactaaccttctttaatcataagtatgtaa-------------tttaaccttgtagttgttaataggttttgatgtttcagaattag 11808278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 21188033 - 21188129
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||| ||| ||||| |||||   |||||||||| ||| ||||||||||| |||||    
T  21188033 ctaaggtaagggtgggactaaccttttttaatcatgagtatataattttgagaaaggatttaattttgtagttgttgata-gttttgatgttatagaa 21188129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 45499480 - 45499433
Alignment:
Q  131 aaagttgattgttgaaagagtaggtaaactattgaattaacgtaaggg 178  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45499480 aaagttgattgttgaaagagtaggtaaactattgatttaacgtaaggg 45499433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 21995646 - 21995714
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    |||||||||||||||||||||| ||||||||||||||||||||  ||||  | ||||||| ||||||||    
T  21995646 accgccgatcatcaatactaagataagggtgggactaaccttcaataattttgagtatgtgattctgaa 21995714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 51336549 - 51336501
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  51336549 accgccgatcatcaatactaaggtaagggtgggactaactttctctaat 51336501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29763614 - 29763685
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    |||| |||||||||||||||||||||||||||||||||| |||| ||||  |||||| | ||||||||||||    
T  29763614 accgacgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtattttaattctgaaaa 29763685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 46197732 - 46197798
Alignment:
Q  6 cgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagt-atgtaattctgaaaa 71  Q
    |||||||||||||||||||||||||||||||||| |||| ||||  ||||| || ||||||||||||    
T  46197732 cgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtaatttaattctgaaaa 46197798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12327725 - 12327773
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| ||||    
T  12327725 accgccgatcatcaatactaaggtaagggtgagactaactttctctaat 12327773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 22145666 - 22145750
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttt 102  Q
    ||||||||||||||||||||| |||| |||| ||  ||  | ||||||||||||||||||||||| ||||||||||  |||||||    
T  22145666 taaggtaagggtgggactaactttctctaataatgggttgtttaattctgaaaaagggtttaaccttgtagttgttgttaggttt 22145750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 24007207 - 24007330
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaacc-atgtagttgttaatagg 99  Q
    |||| |||||||| ||||||||||||||||||||||| | |||| | || || | | | ||||||||||||| |||||||||  ||||||||||  || |    
T  24007207 accgtcgatcatctatactaaggtaagggtgggactagctttctctgataatgattgtataattctgaaaaaaggtttaacctttgtagttgttgtta-g 24007305  T
Q  100 ttttgatgttttaga-attagggtt 123  Q
    |||||||||| |||| |||||||||    
T  24007306 ttttgatgttatagagattagggtt 24007330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 8306577 - 8306518
Alignment:
Q  99 gttttgatgttttagaa-ttagggttcgaaactaaagttgattgttgaaagagtaggtaa 157  Q
    ||||||||||| ||||| |||||||| |||| |||| |||||||||||||||||||||||    
T  8306577 gttttgatgttatagaaattagggtttgaaattaaaattgattgttgaaagagtaggtaa 8306518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 24719552 - 24719606
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||    
T  24719552 taattctgaaaaagggtttaaccttgtagttgttatta-gttttgatgttatagaa 24719606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 28476733 - 28476839
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aa 115  Q
    ||||||||||||||||||||   |||| |||| || |||  | ||||||||||||||||||||||| ||||||||||  || ||||||||||| ||| ||    
T  28476733 ctaaggtaagggtgggactagatttctctaataatgagttgtataattctgaaaaagggtttaaccttgtagttgttgtta-gttttgatgttatagaaa 28476831  T
Q  116 ttagggtt 123  Q
    ||||||||    
T  28476832 ttagggtt 28476839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 34392702 - 34392660
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  34392702 ttgattgttgaaagagtaggtaatccattgaattaacgtaagg 34392660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 20708058 - 20708121
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataag-tatgtaattctgaaaaagggtttaac 81  Q
    ||||||||||||||||||||||||||||||| ||| || | | |||||||||||||||| |||||    
T  20708058 ctaaggtaagggtgggactaaccttctttaa-catgagttctataattctgaaaaaggggttaac 20708121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 21708201 - 21708149
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    |||||||||||||||||||||||||  ||||  | ||||||||||||||||||    
T  21708201 taaggtaagggtgggactaaccttcaataattctgagtatgtaattctgaaaa 21708149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 21712744 - 21712692
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    |||||||||||||||||||||||||  ||||  | ||||||||||||||||||    
T  21712744 taaggtaagggtgggactaaccttcaataattctgagtatgtaattctgaaaa 21712692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 6834126 - 6834083
Alignment:
Q  114 aattagggttcgaaactaaagttgattgttgaaagagtaggtaa 157  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  6834126 aattaggttttgaaactaaaattgattgttgaaagagtaggtaa 6834083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 8276031 - 8276081
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgtttt 111  Q
    ||||||||||||||||||||||| |||||||||| |||  ||||||||||||    
T  8276031 taattctgaaaaagggtttaaccttgtagttgttgata-tttttgatgtttt 8276081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 24727420 - 24727389
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  24727420 ctaaggtaagggtgggactaaccttctttaat 24727389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 38056714 - 38056764
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgtttt 111  Q
    ||||||||||||||||||||||| ||||||||||  || |||||||||||||    
T  38056714 taattctgaaaaagggtttaaccttgtagttgttgtta-gttttgatgtttt 38056764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 45755573 - 45755535
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagt 56  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  45755573 ctaaggtaagggtgagactaaccttctttaattataagt 45755535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 50544882 - 50544849
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgtt 93  Q
    ||||||||||||||||||||||| ||||||||||    
T  50544882 taattctgaaaaagggtttaaccttgtagttgtt 50544849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 12786265 - 12786237
Alignment:
Q  176 ggggggagtctctattcatcataagggtt 204  Q
    |||||||||||||||||||||||||||||    
T  12786265 ggggggagtctctattcatcataagggtt 12786237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 18513880 - 18513932
Alignment:
Q  172 gtaaggggggagtctctattcatcataagggtt-tatgatcatatgggtagtg 223  Q
    ||||||||| |||||||||||| |||||||||| ||||| ||||| |||||||    
T  18513880 gtaagggggaagtctctattcaccataagggttgtatgaacatataggtagtg 18513932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 21239149 - 21239181
Alignment:
Q  125 gaaactaaagttgattgttgaaagagtaggtaa 157  Q
    ||||||||| |||||||||||||||||||||||    
T  21239149 gaaactaaaattgattgttgaaagagtaggtaa 21239181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 9116 - 8982
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |||||||    
T  9116 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaatcttgtagttgttaataggttttgatgttgtagaatt 9017  T
Q  118 agggttcgaaactaaagttgattgttgaaagagta 152  Q
    |||||| ||||||||| ||||| || |||||||||    
T  9016 agggtttgaaactaaaattgatcgtagaaagagta 8982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 14160856 - 14160990
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatta 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||||    
T  14160856 taagataagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaggggtttaaccttgtagttgttaataggttttgatgttgtagaatta 14160955  T
Q  119 gggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||| ||||||||| |||||||| ||||||||||    
T  14160956 gggtttgaaactaaaattgattgtagaaagagtag 14160990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 14318125 - 14317990
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  14318125 ctaaggtaagggtgggacaaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgcagttgttaataggttttgatgttgtagaatt 14318026  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  14318025 agggtttgaaactaaaattgatcgtagaaagagtag 14317990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 15119306 - 15119441
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  15119306 ctaaggtaagggtaggactaaccttctttaatcataagtatgtaatcttgaaaaagggtttaaccttgtagttgttaatagattttgatgttgtagaatt 15119405  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  15119406 agggtttgaaactaaaattgatcgtagaaagagtag 15119441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 9743093 - 9743213
Alignment:
Q  33 gactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaattagggttcgaaactaa 132  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  9743093 gactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaataagttttgatgttgtagaattagggtttgaaactaa 9743192  T
Q  133 agttgattgttgaaagagtag 153  Q
    | ||||| || ||||||||||    
T  9743193 aattgatcgtagaaagagtag 9743213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 43276744 - 43276877
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||||||||| |||| |||| ||  ||  | |||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||    
T  43276744 taaggtaagggtgggactaactttctctaataatgggttgtataattctgaaaatgg-tttaaccttgtagttgttaataggttttgatgttgtagaatt 43276842  T
Q  118 agggttcgaaactaaagttgattgttgaaagagta 152  Q
    |||||| ||||||||| |||||||| |||||||||    
T  43276843 agggtttgaaactaaaattgattgtagaaagagta 43276877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 16250334 - 16250430
Alignment:
Q  125 gaaactaaagttgattgttgaaagagtaggtaaactattgaattaacgtaaggggggagtctctattcatcataagggtt-tatgatcatatgggtag 221  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  16250334 gaaactaaaattgattgttgaaagagtaggtaacc-attgaattaacgtaaggggggagtctctattcatcataagggttgtatgaacatgtgggtag 16250430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 8513752 - 8513868
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaat 116  Q
    |||||||||||||||||||||| |||| |||| ||  ||  | ||||||| ||||||||||||||| |||||||||| ||||||||||||| | ||||||    
T  8513752 ctaaggtaagggtgggactaactttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgtttataggttttgatgctgtagaat 8513851  T
Q  117 tagggttcgaaactaaa 133  Q
    ||||||| |||||||||    
T  8513852 tagggtttgaaactaaa 8513868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 42565832 - 42565907
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgtt 93  Q
    |||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||    
T  42565832 ctaaggtaagggtgagactaatcttctttaatcataaatatataattctgaaaaagggtttaatcttgtagttgtt 42565907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 33060491 - 33060429
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaa 80  Q
    ||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||    
T  33060491 ctaaggtaagggtgggactaaccttctttaatcatgagtctataattctggaaaagggtttaa 33060429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30820133 - 30820202
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    |||||||||||||||||||||||| ||||||||||||||||||  ||||  | |||||||||||||||||    
T  30820133 accgccgatcatcaatactaaggtgagggtgggactaaccttcagtaattctgagtatgtaattctgaaa 30820202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 8488093 - 8488197
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaat 116  Q
    |||||||||||||||||||||| |||| |||| ||  ||  | ||||||| ||||||||||||||| | |||||||| ||||||||||||| | ||||||    
T  8488093 ctaaggtaagggtgggactaactttctctaataatgggttgtataattctaaaaaagggtttaaccttatagttgtttataggttttgatgctgtagaat 8488192  T
Q  117 taggg 121  Q
    |||||    
T  8488193 taggg 8488197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 15700854 - 15700895
Alignment:
Q  139 ttgttgaaagagtaggtaaactattgaattaacgtaaggggg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15700854 ttgttgaaagagtaggtaaactattgaattaacgtaaggggg 15700895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 4690662 - 4690768
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aa 115  Q
    ||||||||| |||||||||||| |||| ||||  |||||  | ||||||||||||||||||||||| ||||||||||| ||  |||||||||| ||| ||    
T  4690662 ctaaggtaaaggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttatta-cttttgatgttatagaaa 4690760  T
Q  116 ttagggtt 123  Q
    ||||||||    
T  4690761 ttagggtt 4690768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29052164 - 29052235
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    |||| |||||||||||||||||||||||||||||||||| |||| ||||  |||||| | ||||||||||||    
T  29052164 accgtcgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtattttaattctgaaaa 29052235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19485955 - 19485993
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaac 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19485955 accgccgatcatcaatactaaggtaagggtgggactaac 19485993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 16549990 - 16550058
Alignment:
Q  4 gccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||  |||||| | ||||||||||||    
T  16549990 gccgatcatcaatactaaggtaaggttgggactaactttctctaattctaagtattttaattctgaaaa 16550058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 16615672 - 16615604
Alignment:
Q  4 gccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||  |||||| | ||||||||||||    
T  16615672 gccgatcatcaatactaaggtaaggttgggactaactttctctaattctaagtattttaattctgaaaa 16615604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 13744621 - 13744668
Alignment:
Q  131 aaagttgattgttgaaagagtaggtaaactattgaattaacgtaaggg 178  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  13744621 aaagttgatcgttgaaagagaaggtaaactattgatttaacgtaaggg 13744668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 36685134 - 36685197
Alignment:
Q  7 gatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    |||||||||||||||||||||||||| || |||||||  ||||  | |||||||||||||||||    
T  36685134 gatcatcaatactaaggtaagggtggaaccaaccttcaataattctgagtatgtaattctgaaa 36685197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 8930883 - 8930925
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    ||||||||||||||||||||||||| |||||||||||| ||||    
T  8930883 ttgattgttgaaagagtaggtaaaccattgaattaacgaaagg 8930925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 21661309 - 21661252
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataag-tatgtaattctgaaaaaggg 75  Q
    |||||||||||||||||||||||||||||||| || || ||| ||||||||||||||||    
T  21661309 ctaaggtaagggtgggactaaccttctttaat-atgagttatataattctgaaaaaggg 21661252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 43745709 - 43745612
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    |||||||||||||||||||| | |||| |||| || |||  | ||||| ||||||||||||||||| ||||||||||  || ||||||||||| |||||    
T  43745709 ctaaggtaagggtgggactagctttctctaataatgagttgtataattatgaaaaagggtttaaccttgtagttgttgtta-gttttgatgttatagaa 43745612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 46579741 - 46579783
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttc 43  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  46579741 accgccgatcatcaatactaaggtaagggtgggaacaaccttc 46579783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 15203231 - 15203178
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||  |||| || ||||||| ||||||||||    
T  15203231 ctaaggtaagggtgggactaaccttcaataattatgagtatgtgattctgaaaa 15203178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 36704570 - 36704623
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataag-tatgtaattctgaaa 70  Q
    ||||||||||||||||||||||||||||||||  |||| | |||||||||||||    
T  36704570 ctaaggtaagggtgggactaaccttctttaattttaagttgtgtaattctgaaa 36704623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 25943203 - 25943163
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaa 175  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  25943203 ttgattgttgaaagagtaggtaaaccattgaattaatgtaa 25943163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 10658850 - 10658881
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  10658850 ctaaggtaagggtgggactaaccttctttaat 10658881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 14980670 - 14980721
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    |||||||||||||||||||||||||  ||||| | ||||||| |||||||||    
T  14980670 taaggtaagggtgggactaaccttcaataatcttgagtatgtgattctgaaa 14980721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 15410146 - 15410197
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    |||||||||||||||||||||||||  ||||| | ||||||| |||||||||    
T  15410146 taaggtaagggtgggactaaccttcaataatcttgagtatgtgattctgaaa 15410197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 33556221 - 33556264
Alignment:
Q  135 ttgattgttgaaagagtaggtaaa-ctattgaattaacgtaagg 177  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  33556221 ttgattgttgaaagagtaggtaaatccattgaattaacgtaagg 33556264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 18570581 - 18570540
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  18570581 ttgattgttgaaagagtaggt-aaccattgaattaacgtaagg 18570540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 20252181 - 20252278
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    ||||||||||||| |||||| | |||| |||| || |||  | ||||||||||||||||||||||  ||||||||||| || ||||| ||||| |||||    
T  20252181 ctaaggtaagggtaggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgttatta-gttttaatgttatagaa 20252278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 19195677 - 19195589
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgtt 93  Q
    ||||||||| |  |||||||||||||||||||| | |||| |||| || |||  | |||||||||||| |||||||||| ||||||||||    
T  19195677 ccgatcatctaatctaaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaa-gggtttaaccttgtagttgtt 19195589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 36300761 - 36300798
Alignment:
Q  140 tgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    |||||||||||||||||| | |||||||||||||||||    
T  36300761 tgttgaaagagtaggtaatccattgaattaacgtaagg 36300798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 47095505 - 47095399
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatg--taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-a 114  Q
    |||||||||||||||||||| | |||| |||| ||  || ||  ||||||||||||| ||||||||| ||||||||||  |||| ||||||||| ||| |    
T  47095505 ctaaggtaagggtgggactagctttctctaataatgggt-tgaataattctgaaaaatggtttaaccttgtagttgttgttagg-tttgatgttatagaa 47095408  T
Q  115 attagggtt 123  Q
    |||||||||    
T  47095407 attagggtt 47095399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 13315176 - 13315232
Alignment:
Q  114 aattagggttcgaaactaaagttgattgttgaaagagtaggtaaactattgaattaa 170  Q
    ||||||| || |||| |||| ||||||||||||||||||||||| | | ||||||||    
T  13315176 aattaggttttgaaattaaaattgattgttgaaagagtaggtaacccaatgaattaa 13315232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 15575691 - 15575754
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aattagggtt 123  Q
    ||||||||||||||||||||||| |||| |||||  || ||||||||||| ||| ||||||||||    
T  15575691 taattctgaaaaagggtttaaccttgtacttgttgtta-gttttgatgttatagaaattagggtt 15575754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 16186923 - 16186860
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aattagggtt 123  Q
    ||||||||||||||||||||||| | | ||||||| || ||||||||||| ||| ||||||||||    
T  16186923 taattctgaaaaagggtttaaccttatggttgttagta-gttttgatgttatagaaattagggtt 16186860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 16250221 - 16250285
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataag-tatgtaattctgaaaaagggtttaac 81  Q
    |||||||||||||||||||||| |||| |||| || || | | ||||| ||||||||||||||||    
T  16250221 ctaaggtaagggtgggactaactttctctaataatgagttgtataattttgaaaaagggtttaac 16250285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 18147669 - 18147697
Alignment:
Q  176 ggggggagtctctattcatcataagggtt 204  Q
    |||||||||||||||||||||||||||||    
T  18147669 ggggggagtctctattcatcataagggtt 18147697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 26762455 - 26762321
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  26762455 ctaaggtaagggtgggactaaccttctttaatcataattatgtaatcctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaatt 26762356  T
Q  118 agggttcgaaactaaagttgattgttgaaagagta 152  Q
    |||||| ||||||||| ||||| || |||||||||    
T  26762355 agggtttgaaactaaaattgatcgtagaaagagta 26762321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 1626917 - 1627077
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| || ||||    
T  1626917 ctaaggtaagggtgtgactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtaaaatt 1627016  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtaggtaaactattgaattaacgtaaggg 178  Q
    || |||       ||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  1627017 agagtttatttgcaaaattgattgttgaaagagtaggtaaaccattgaattaacgtaaggg 1627077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 8833209 - 8833340
Alignment:
Q  22 ggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaattaggg 121  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  8833209 ggtaagggtgggactgaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttatagttgttaataggttttgatgttgtagaattaggg 8833308  T
Q  122 ttcgaaactaaagttgattgttgaaagagtag 153  Q
    || ||||||||| ||||| || ||||||||||    
T  8833309 tttgaaactaaaattgatcgtagaaagagtag 8833340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 14025806 - 14025941
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| || ||||    
T  14025806 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaatagattttgatgttgtataatt 14025905  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||| | ||||| || ||||||||||    
T  14025906 agggtttgaaactacaattgatcgtagaaagagtag 14025941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 8503888 - 8504022
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatta 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||    
T  8503888 taaggtaagggtgggactaaccttcttcaatcataagtatgtaatcctgaacaagagtttaaccttgtagttgttaataggttttgatgttgtagaatta 8503987  T
Q  119 gggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||| ||||||||| ||||| || ||||||||||    
T  8503988 gggtttgaaactaaaattgatcgtagaaagagtag 8504022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 26750084 - 26749950
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||| |||||||||| ||||||||||||||| |||| ||||||| |||||||||| |||||||||||||| ||||||||||| |||||||    
T  26750084 ctaaggtaagggtgagactaaccttttttaatcataagtatataatcctgaaaaggggtttaaccttgtagttgttaataagttttgatgttgtagaatt 26749985  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||||  |||||||| |||||  | ||||||||||    
T  26749984 agggtt-aaaactaaaattgatcatagaaagagtag 26749950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 24068234 - 24068098
Alignment:
Q  66 tgaaaaagggtttaaccatgtagttgttaataggttttgatgttttaga-attagggttcgaaactaaagttgattgttgaaagagtaggtaaactattg 164  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||  | | | || || |||||||||| ||||||||||| ||||    
T  24068234 tgaaaaagggtttaaccttgtagttgttaataggttttgatgttaaagagattagggtt--atattgaatttaattgttgaaaaagtaggtaaaccattg 24068137  T
Q  165 aattaacgtaaggggggagtctctattcatcataagggtt 204  Q
    |||||||||||| ||||||| || ||||||||||||||||    
T  24068136 aattaacgtaagtggggagtttc-attcatcataagggtt 24068098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 21504192 - 21504087
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aat 116  Q
    ||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||||   ||||||||||| || ||||||||||| ||| |||    
T  21504192 ctaaggtaaaggtgggactaaccttctttaatcataagtatatggttctgaaaaagggtttaagtttgtagttgttagta-gttttgatgttatagaaat 21504094  T
Q  117 tagggtt 123  Q
    |||||||    
T  21504093 tagggtt 21504087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17011798 - 17011727
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||| | ||||||||||||    
T  17011798 accgccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtattttaattctgaaaa 17011727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 18744927 - 18744821
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aa 115  Q
    |||||||||||||||||||||| |||| |||| ||  ||  | ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||| ||    
T  18744927 ctaaggtaagggtgggactaactttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttatta-gttttgatgttatagaaa 18744829  T
Q  116 ttagggtt 123  Q
    ||||||||    
T  18744828 ttagggtt 18744821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10774646 - 10774688
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttc 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10774646 accgccgatcatcaatactaaggtaagggtgggactaaccttc 10774688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 21404138 - 21404080
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggt 76  Q
    ||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||    
T  21404138 ctaaggtaaggatgggactaaccttctttaatcatgagtctataattctgaaaaagggt 21404080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 21554285 - 21554354
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||  | |||| ||||||||||||    
T  21554285 accgctgatcatcaatactaaggtaagggtgggactaaccttcagtaattctgagtacgtaattctgaaa 21554354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 21556931 - 21557000
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||  | | |||||||||||||||    
T  21556931 accgccgatcatcaatactaaggtaagggtgagactaaccttcagtaattctgaatatgtaattctgaaa 21557000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 21398800 - 21398860
Alignment:
Q  23 gtaagggtgggactaaccttctttaatcataagtatgtaattctg-aaaaagggtttaacc 82  Q
    |||||||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||    
T  21398800 gtaagggtgggactaaccttctttaatcatgagtgtataattctgaaaaaagggtttaacc 21398860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 6551289 - 6551365
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgtt 93  Q
    |||||||||||||| ||||||| |||| ||||  |||||  | ||||||||||||||||||||||| ||||||||||    
T  6551289 ctaaggtaagggtgagactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgtt 6551365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31457030 - 31456982
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| ||||    
T  31457030 accgccgatcatcaatactaaggtaagggtgagactaactttctctaat 31456982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 23199207 - 23199312
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aat 116  Q
    ||||||||||||||||||| | |||| |||| ||  ||  | ||||||||||||| ||||||||| ||||||||||| || ||||||||||| ||| |||    
T  23199207 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaatggtttaaccttgtagttgttagta-gttttgatgttatagaaat 23199305  T
Q  117 tagggtt 123  Q
    |||||||    
T  23199306 tagggtt 23199312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 21914491 - 21914544
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||  ||||  | ||||||||||||||||||    
T  21914491 ctaaggtaagggtgggactaaccttcaataattctgagtatgtaattctgaaaa 21914544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26832691 - 26832623
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    ||||| || ||||||||||| ||||||||||||| ||||||||  ||||  ||||||||| ||||||||    
T  26832691 accgctgaccatcaatactacggtaagggtgggagtaaccttcaataattctaagtatgtgattctgaa 26832623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 22111909 - 22111870
Alignment:
Q  139 ttgttgaaagagtaggtaaactattgaattaacgtaaggg 178  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  22111909 ttgttgaaagagtaggtaaacaatcgaattaacgtaaggg 22111870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 25249827 - 25249881
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataag-tatgtaattctgaaaa 71  Q
    ||||||||||||| ||||||||||||||||||  |||| ||| ||||||||||||    
T  25249827 ctaaggtaagggtaggactaaccttctttaattttaagttatataattctgaaaa 25249881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 25313611 - 25313665
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataag-tatgtaattctgaaaa 71  Q
    ||||||||||||| ||||||||||||||||||  |||| ||| ||||||||||||    
T  25313611 ctaaggtaagggtaggactaaccttctttaattttaagttatataattctgaaaa 25313665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 21398766 - 21398806
Alignment:
Q  139 ttgttgaaagagtaggtaaa-ctattgaattaacgtaaggg 178  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  21398766 ttgttgaaagagtaggtaaatccattgaattaacgtaaggg 21398806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30616684 - 30616636
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||| || ||||||||||||||| || |||| ||||    
T  30616684 accgccgatcatcaatattatggtaagggtgggactgactttctctaat 30616636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 8874 - 8739
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||| |||||||    
T  8874 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagatgttaatcggttttgatgttgtagaatt 8775  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  8774 agggtttgaaactaaaattgatcgtagaaagagtag 8739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 62771 - 62636
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  62771 ctaaggtaaggatgagactaaccttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtggttgttaataggttttgatgttgtagaatt 62672  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| |||||||| ||||||||||    
T  62671 agggtttgaaactaaaattgattgtagaaagagtag 62636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 9927 - 10062
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||  ||||||||||||||||| |||||||    
T  9927 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttagccttgtagtttctaataggttttgatgttgtagaatt 10026  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  10027 agggtttgaaactaaaattgatcgtagaaagagtag 10062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 4474 - 4339
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  4474 ctaaggtaagggtgggactaaccttctttaatcataagtatataatcccgaaaaaaggtttaaccttgtagttgttaataggttttgatgttgtagaatt 4375  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| ||||| || ||||||||||    
T  4374 agggtttgaaactaaaattgatcgtagaaagagtag 4339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 23968615 - 23968757
Alignment:
Q  11 atcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttt 110  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| |||||||||||||||||||     
T  23968615 atcaatccaaaggtaagggtgagactaaccttctttaatcataagtatgtaatcctgaaaaaaggtttaaccttgtagtcgttaataggttttgatgttg 23968714  T
Q  111 tagaattagggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||||||||||| ||||||||| ||||| || ||||||||||    
T  23968715 tagaattagggtttgaaactaaaattgatcgtagaaagagtag 23968757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 14179728 - 14179862
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatta 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| || | || |||||||||| |||||||||| | ||||||    
T  14179728 taaggtaagggtgggactaaccttctttaatcatgagtatgtaatcctgaaaaaaggtttatccttatacttgttaatagattttgatgttgtggaatta 14179827  T
Q  119 gggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||| ||||||||| |||||||| ||||||||||    
T  14179828 gggtttgaaactaaaattgattgtagaaagagtag 14179862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 24718067 - 24717937
Alignment:
Q  23 gtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaattagggt 122  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| |||| |||| ||||||||||||||||  |||||| ||||    
T  24718067 gtaagggtgggactaacattctttaatcataagtatgtaatcctgaaaaggggtttaaccttgtatttgtcaataggttttgatgttgcagaattcgggt 24717968  T
Q  123 tcgaaactaaagttgattgttgaaagagtag 153  Q
    | ||||||||| |||||||| ||||||||||    
T  24717967 ttgaaactaaaattgattgtagaaagagtag 24717937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 14183466 - 14183600
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatta 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |||| || | || ||||||||||||||||||||| | ||||||    
T  14183466 taaggtaagggtgggactaaccttctttaatcatgagtatgtaatcctgaaaaaagatttatccttatacttgttaataggttttgatgttgtggaatta 14183565  T
Q  119 gggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||| ||||||||| |||||||| ||||| ||||    
T  14183566 gggtttgaaactaaaattgattgtagaaagggtag 14183600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 19647286 - 19647206
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaatag 98  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  19647286 ctaaggtatgggtgagactaaccttctttaatcataagtatataattctgaaaaagggtttaatcttgtagttgttaatag 19647206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 28652551 - 28652707
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaacc-atgtagttgttaataggttttgatgttttag-aa 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||  || ||||||||||| ||| ||    
T  28652551 ctaaggtaagggtgggactaaccttcattaatcataagtatgtaattctgaaaaagggtttagcctttgtagttgttgtta-gttttgatgttatagaaa 28652649  T
Q  116 ttagggttcgaaactaaagttgattgttgaaagagtaggtaaactattgaattaacgtaa 175  Q
    ||||||||  | | | || || |||||| ||||||||||||| | | |||||||| ||||    
T  28652650 ttagggtt--agattgaatttaattgttaaaagagtaggtaatccaatgaattaaggtaa 28652707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 25584267 - 25584367
Alignment:
Q  23 gtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa-ttaggg 121  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||| | ||| ||||||||||| ||||| ||||||    
T  25584267 gtaagggtgggaataaccttctttaatcatgagtatataattctgaaaaagggtttaaccttgtcgttgatgata-gttttgatgttatagaagttaggg 25584365  T
Q  122 tt 123  Q
    ||    
T  25584366 tt 25584367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 20005970 - 20006121
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||| |||||||||||||| ||| | |||||||||||||||||||||   ||| ||||||||||  |||||||||| ||||| |    
T  20005970 ctaaggtaagggtgggactagccttctttaatcatgagtctataattctgaaaaagggtttaattttgttgttgttaata-attttgatgttatagaagt 20006068  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtaggtaaactattgaattaa 170  Q
      |||| |||    || |||||||||||||| |||||||| | | ||||||||    
T  20006069 taggtttgaattgcaatttgattgttgaaagtgtaggtaatcgaatgaattaa 20006121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 12626427 - 12626489
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaac 81  Q
    ||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  12626427 taaggtaagggtgggactaaccttcattaatcataagtgtataattctgaaaaagggtttaac 12626489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 45535978 - 45535903
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgtt 93  Q
    ||||||||||||||||||||||||||||||||||  ||| | ||||||||||||||||||||| | ||| ||||||    
T  45535978 ctaaggtaagggtgggactaaccttctttaatcacgagtctataattctgaaaaagggtttaatcttgttgttgtt 45535903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34858174 - 34858242
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||  | ||||||| ||||||||    
T  34858174 accgccgatcatcaatactaaggtaagggtgggactaaccttcaataattttgagtatgtgattctgaa 34858242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34873236 - 34873304
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||  | ||||||| ||||||||    
T  34873236 accgccgatcatcaatactaaggtaagggtgggactaaccttcaataattttgagtatgtgattctgaa 34873304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21080951 - 21081022
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagt-atgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||  ||||| || ||||||||||||    
T  21080951 accgccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtaatttaattctgaaaa 21081022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 357951 - 357903
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  357951 accgccgatcatcaatactaaggtaagggtgggactaactttctctaat 357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 21315475 - 21315572
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    |||||||||||||||||||| | |||| |||| ||  ||  | ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||    
T  21315475 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttatta-gttttgatgttatagaa 21315572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 21335265 - 21335362
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    |||||||||||||||||||| | |||| |||| ||  ||  | ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||    
T  21335265 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttatta-gttttgatgttatagaa 21335362  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34491222 - 34491258
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggacta 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  34491222 accgccgatcatcaatactaaggtaagggtgggacta 34491258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 40912386 - 40912342
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  40912386 ccgatcatcaatactaaggtaagggtgggactaactttctctaat 40912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 149585 - 149644
Alignment:
Q  99 gttttgatgttttagaa-ttagggttcgaaactaaagttgattgttgaaagagtaggtaa 157  Q
    ||||||||||| ||||| |||||||| |||| |||| |||||||||||||||||||||||    
T  149585 gttttgatgttatagaaattagggtttgaaattaaaattgattgttgaaagagtaggtaa 149644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 21915694 - 21915623
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||| ||||  |||||| | ||||||||||||    
T  21915694 accgccgatcatcaatactaaagtaagggtgtgactaactttctctaattctaagtattttaattctgaaaa 21915623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25184259 - 25184188
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    |||||| |||||||||||||||||||||||| ||||||| |||| ||||  |||||| | ||||||||||||    
T  25184259 accgccaatcatcaatactaaggtaagggtgagactaactttctctaattctaagtattttaattctgaaaa 25184188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 27484475 - 27484515
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctt 45  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  27484475 ccgatcatcaatactaaggtaagggtgagactaactttctt 27484515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 12626527 - 12626570
Alignment:
Q  114 aattagggttcgaaactaaagttgattgttgaaagagtaggtaa 157  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  12626527 aattaggttttgaaactaaaattgattgttgaaagagtaggtaa 12626570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 25046171 - 25046140
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  25046171 ctaaggtaagggtgggactaaccttctttaat 25046140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 21369303 - 21369240
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aattagggtt 123  Q
    ||||||||||||||||||||||| |||||||  || || ||||||||||| ||| ||||||||||    
T  21369303 taattctgaaaaagggtttaaccttgtagtttatatta-gttttgatgttatagaaattagggtt 21369240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 24792758 - 24792810
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    ||||||||||||||||||||||||||  ||||  | ||||||| |||||||||    
T  24792758 ctaaggtaagggtgggactaaccttcaataattctgagtatgtgattctgaaa 24792810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 25584229 - 25584273
Alignment:
Q  135 ttgattgttgaaagagtaggtaaa-ctattgaattaacgtaaggg 178  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||    
T  25584229 ttgattgttgaaagagtaggtaaatttatcgaattaacgtaaggg 25584273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 57026 - 56894
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   ||||| ||||| |||||||||||||||||||| |||||||    
T  57026 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaatcctgaaaaagg---taaccttgtagatgttaataggttttgatgttgtagaatt 56930  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| |||||||| ||||||||||    
T  56929 agggtttgaaactaaaattgattgtagaaagagtag 56894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 398 - 263
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  398 ctaaggtaagggtgagattaatcttctttaatcataagtatgtaatcctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaatt 299  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||| ||||||||| || || || ||||||||||    
T  298 agggtttgaaactaaaatttatagtagaaagagtag 263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 28766 - 28614
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgtttta-gaat 116  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||| |||||  |||| || ||||    
T  28766 ctaaggtaagagtgggactaaccttctttaatcataagtatataattctgaaaaagcgtttaatcttgtagttgttaata-gttttattgttataggaat 28668  T
Q  117 tagggttcgaaact-aaagttgattgttgaaagagtaggtaaactattgaattaac 171  Q
    |||||||  ||| | ||| |||||||||||||| |||||||| ||| |||||||||    
T  28667 tagggtt--aaattgaaatttgattgttgaaagtgtaggtaatctaatgaattaac 28614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 38441 - 38594
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||   |||||||||||||| ||||||||||| ||||| |    
T  38441 ctaaggtaagggtgtgactaaccttctttaatcatgagtatataattctgaaaaagggtttaattttgtagttgttaata-gttttgatgttatagaagt 38539  T
Q  118 agggttcgaaacta-aagttgattgttgaaagagtaggtaaactattgaattaac 171  Q
      ||||  ||| || || |||||||||||||| |||||||| | | |||||||||    
T  38540 taggttttaaattacaatttgattgttgaaagtgtaggtaatccaatgaattaac 38594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1939 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 180 - 41
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa-t 116  Q
    ||||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||| |   |||||||||||||| ||||||||||| ||||| |    
T  180 ctaaggtaagggtgggactaaccttctttaatcattagtatatggttctgaaaaagggttttaatttgtagttgttaata-gttttgatgttatagaagt 82  T
Q  117 tagggttcgaaactaaagttgattgttgaaagagtaggtaa 157  Q
    |||||||  ||   ||| |||||||||||||||||||||||    
T  81 tagggttaaaattgaaaattgattgttgaaagagtaggtaa 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 20199 - 20121
Alignment:
Q  71 aagggtttaaccatgtagttgttaataggttttgatgttttagaattagggttcgaaactaaagttgattgttgaaaga 149  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||    
T  20199 aagggtttaaccttgtagttgttaataggttttgatgttttagaattagggtttgaaattaaaattgattgtagaaaga 20121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 3257 - 3161
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||   |||||||||| ||| ||||||||||| |||||    
T  3257 ctaaggtaagggtgggactaaccttctttaatcatgagtatataattatgaaaaagggtttaattttgtagttgttgata-gttttgatgttatagaa 3161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 59655 - 59751
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||  |||||||||| ||| |||||||| || |||||    
T  59655 ctaaggtaagggtgggtctaaccttctttaatcatgagtatataattctgaaaaagggtttaactttgtagttgttgata-gttttgatattatagaa 59751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6438 - 6381
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtat 58  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| ||||  |||||||    
T  6438 accgccgatcatcaatactaatgtaagggtgggactaactttctctaattctaagtat 6381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 23666 - 23570
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    ||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||   |||||||||||||| ||||||||||| |||||    
T  23666 ctaaggtaagggtgggactgaccttctttaatcatgagtatataattctaaaaaagggtttaattttgtagttgttaata-gttttgatgttatagaa 23570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 29316 - 29199
Alignment:
Q  66 tgaaaaagggtttaaccatgtagttgttaataggttttgatgttttaga-attagggttcgaaactaaagttgattgttgaaagagtaggtaaactattg 164  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||| |||| ||||  | | | || || |||||||||||||||||||||| ||||    
T  29316 tgaaaaagggtttaaccttgtagttgttaataggttttgatgttaaagagattaaggtt--atattgaatttaattgttgaaagagtaggtaaaccattg 29219  T
Q  165 aattaacgtaaggggggagt 184  Q
    |||||||||||| |||||||    
T  29218 aattaacgtaagtggggagt 29199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 40160 - 40268
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtat---gtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttaga 114  Q
    ||||||||||||||||||||||||||| ||||||| |||||    ||||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  40160 ctaaggtaagggtgggactaaccttctctaatcatgagtatataataattctaaaaaagggtttaaccatgtagttgttgata-gttttgatgttataga 40258  T
Q  115 a-ttagggtt 123  Q
    | ||||||||    
T  40259 agttagggtt 40268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 23601 - 23568
Alignment:
Q  4 gccgatcatcaatactaaggtaagggtgggacta 37  Q
    ||||||||||||||||||||||||||| ||||||    
T  23601 gccgatcatcaatactaaggtaagggtaggacta 23568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 5685 - 5548
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaa--gggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    ||||||||||||||||||| | |||| |||| ||  ||  | |||||||||||||  |||||||||  |||||||||||||||||||||||||| |||||    
T  5685 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaaaagggtttaactttgtagttgttaataggttttgatgttgtagaa 5586  T
Q  116 ttagggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||||| | ||||||| ||||| || ||||||||||    
T  5585 ttagggtttggaactaaaattgatcgtagaaagagtag 5548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 204
Target Start/End: Complemental strand, 1086 - 943
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa-ttagggttcgaaact--aaagttgattgttgaaagagtaggta 156  Q
    ||||||||||||||||||||||| ||||| ||||  ||| |||||||||||||||| ||| ||||   || |  ||| ||||||||| ||| ||||||||    
T  1086 taattctgaaaaagggtttaaccttgtagatgttgttag-ttttgatgttttagaaattatggtt---aattgcaaaattgattgttaaaatagtaggta 991  T
Q  157 aactattgaattaacgtaaggggggagtctctattcatcataagggtt 204  Q
    || ||| ||||||||||||||||| |||||||||||| ||||||||||    
T  990 aattatcgaattaacgtaagggggaagtctctattcaccataagggtt 943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 6419 - 6514
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaacc-atgtagttgttaataggttttgatgttttaga 114  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||  ||||||||||  || ||||||||||| ||||    
T  6419 ctaaggtaagggtgggactaaccttcattaatcataagtatgtaattct-aaaaagggtttaacctttgtagttgttgtta-gttttgatgttataga 6514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 6471 - 6334
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttga-tgttttagaa 115  Q
    |||||||||||||  ||||| | |||| |||| || |||  |||||||||||||||||| |||| | |||||||||| ||||||||| | |||| |||||    
T  6471 ctaaggtaagggtaagactagctttctctaataatgagttgtgtaattctgaaaaagggattaatcttgtagttgtttataggtttttaatgttgtagaa 6372  T
Q  116 ttagggttcgaaactaaagttgattgttgaaagagtag 153  Q
    |||||||| ||||||||| |||||||| ||||||||||    
T  6371 ttagggtttgaaactaaaattgattgtagaaagagtag 6334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1437 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1437
Description:

Target: scaffold1437; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 321 - 414
Alignment:
Q  46 taatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaattagggttcgaaactaaagttgat 139  Q
    ||||||||||||||| || |  ||||||||||||||  |||||||||||||||||||||||||| || ||||| |||| ||||||||| |||||    
T  321 taatcataagtatgtcatccaaaaaaagggtttaacattgtagttgttaataggttttgatgttgtaaaattaaggttggaaactaaaattgat 414  T

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Target: scaffold0577 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9129 - 9060
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||  | |||||||||||||||||    
T  9129 accgccgatcatcaatactaaggtaagggtgggactaaccttcagtaattctgagtatgtaattctgaaa 9060  T

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Target: scaffold0394 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 7513 - 7609
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    |||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||||   | |||||||| ||| ||||||||||| |||||    
T  7513 ctaaggtaagggtgggactaaccttctttaattatgagtatatgattctgaaaaagggtttaattttatagttgttgata-gttttgatgttatagaa 7609  T

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Target: scaffold0165 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 31982 - 31886
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    |||||||||||||| |||||||| ||||||||||| ||||| | |||||||||||||||||||   | |||||||||||| ||||||||||| |||||    
T  31982 ctaaggtaagggtgagactaaccatctttaatcatgagtatatgattctgaaaaagggtttaattttatagttgttaata-gttttgatgttgtagaa 31886  T

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Target: scaffold0165; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 32100 - 32039
Alignment:
Q  19 taaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaa 80  Q
    ||||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||||    
T  32100 taaggtaagggtggggctaaccttctttaatcatgagtatatgattctgaaaaagggtttaa 32039  T

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Target: scaffold1160 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 683 - 603
Alignment:
Q  72 agggtttaaccatgtagttgttaataggttttgatgttttagaattagggttcgaaactaaagttgattgttgaaagagta 152  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||  | |||||||||    
T  683 agggtttaacattgtagttgttaataggttttgatgttgtagaattagggtttgaaactaaaattgatcatagaaagagta 603  T

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Target: scaffold0153 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5367 - 5299
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| || ||||||| ||||||||    
T  5367 accgccgatcatcaatactaaggtaagggtgggactaaccttcaataattatgagtatgtgattctgaa 5299  T

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Target: scaffold0153; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 12387 - 12319
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| || ||||||| ||||||||    
T  12387 accgccgatcatcaatactaaggtaagggtgggactaaccttcaataattatgagtatgtgattctgaa 12319  T

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Target: scaffold0125 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 28604 - 28540
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaacc 82  Q
    |||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  28604 ctaaggtaagagtgggactaaccttccttaatcatgagtatataattctgaaaaagggtttaacc 28540  T

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Target: scaffold0021 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 17158 - 17078
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaatag 98  Q
    |||||||||||||||||| || ||||||||||||| ||||| ||||||| ||||||||||||||  |||||||||| ||||    
T  17158 ctaaggtaagggtgggacgaatcttctttaatcatgagtatataattcttaaaaagggtttaactttgtagttgttgatag 17078  T

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Target: scaffold0021; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 26689 - 26609
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaatag 98  Q
    |||||||||||||||||| || ||||||||||||| ||||| ||||||| ||||||||||||||  |||||||||| ||||    
T  26689 ctaaggtaagggtgggacgaatcttctttaatcatgagtatataattcttaaaaagggtttaactttgtagttgttgatag 26609  T

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Target: scaffold0021; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 169408 - 169358
Alignment:
Q  103 tgatgttttagaattagggttcgaaactaaagttgattgttgaaagagtag 153  Q
    ||||||| ||||||||||||| ||||||||| ||||| || ||||||||||    
T  169408 tgatgttgtagaattagggtttgaaactaaaattgatcgtagaaagagtag 169358  T

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Target: scaffold1102 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 1950 - 2029
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaata 97  Q
    ||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||   ||| ||||||||||    
T  1950 ctaaggtaacggtgggactaaccttctttaatcatgagtctataattctgaaaaagggtttaattttgttgttgttaata 2029  T

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Target: scaffold0059 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 49782 - 49720
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaa 80  Q
    ||||||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||    
T  49782 ctaaggtaagggtgggactaaccttctttaatcatgagtccataattctgaaaaagggtttaa 49720  T

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Target: scaffold1800 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1800
Description:

Target: scaffold1800; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 660 - 522
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaatt 117  Q
    ||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||| |||||||   ||| |||||| |||  |||||||||| ||||| |    
T  660 ctaaggtaagggtgggactaaccttctttaatcatgagtctataattcttaaaaatggtttaattttgttgttgttgata-attttgatgttatagaagt 562  T
Q  118 agggttcgaaactaaagttgattgttgaaagagtaggtaa 157  Q
      |||| |||    || |||||||||||||| ||||||||    
T  561 taggtttgaattgcaatttgattgttgaaagtgtaggtaa 522  T

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Target: scaffold0138 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 21167 - 21096
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||| | ||||||||||||    
T  21167 accgccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtattttaattctgaaaa 21096  T

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Target: scaffold0138; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34182 - 34111
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||| | ||||||||||||    
T  34182 accgccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtattttaattctgaaaa 34111  T

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Target: scaffold0004 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 75875 - 75828
Alignment:
Q  131 aaagttgattgttgaaagagtaggtaaactattgaattaacgtaaggg 178  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  75875 aaagttgattgttgaaagagtaggtaaactattgagttaacgtaaggg 75828  T

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Target: scaffold0004; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 73025 - 72982
Alignment:
Q  131 aaagttgattgttgaaagagtaggtaaactattgaattaacgta 174  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  73025 aaagttgattgttgaaagagtaggtaagccattgaattaacgta 72982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 110259 - 110216
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaaggg 178  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  110259 ttgattattgaaagagtaggtaaaccattgaattaacgtaaggg 110216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 19260 - 19163
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttagaa 115  Q
    |||| ||||||||||||||||| |||| ||||  |||||  | ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||    
T  19260 ctaacgtaagggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttatta-gttttgatgttatagaa 19163  T

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Target: scaffold0515 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 5096 - 5028
Alignment:
Q  4 gccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagt-atgtaattctgaaaa 71  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||  ||||| || ||||||||||||    
T  5096 gccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtaatttaattctgaaaa 5028  T

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Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 5096 - 5028
Alignment:
Q  4 gccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagt-atgtaattctgaaaa 71  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||  ||||| || ||||||||||||    
T  5096 gccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtaatttaattctgaaaa 5028  T

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Target: scaffold0203 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 17926 - 18045
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgttaataggtttt 103  Q
    ||||||||| |  |||||||||||||||||||||| |||| ||||  |||||  | ||||||||||||||| ||||||| ||||||||||  || |||||    
T  17926 ccgatcatctaatctaaggtaagggtgggactaactttctctaattctaagttgtataattctgaaaaaggatttaaccttgtagttgttgtta-gtttt 18024  T
Q  104 gatgttttag-aattagggtt 123  Q
    |||||| ||| ||||||||||    
T  18025 gatgttatagaaattagggtt 18045  T

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Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 69838 - 69906
Alignment:
Q  4 gccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagt-atgtaattctgaaaa 71  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||  ||||| || ||||||||||||    
T  69838 gccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtaatttaattctgaaaa 69906  T

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Target: scaffold0436 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 9026 - 8959
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||| | ||||||||||||    
T  9026 ccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagtattttaattctgaaaa 8959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 8129 - 8086
Alignment:
Q  66 tgaaaaagggtttaaccatgtagttgttaataggttttgatgtt 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  8129 tgaaaaagggtttaaccttgtagttgttaataggttttgatgtt 8086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 127461 - 127503
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaagg 177  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  127461 ttgattgttgaaagagtaggtaaaccattgaattaacgtaagg 127503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 2199 - 2275
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgtt 93  Q
    |||||||||||||||||||||  |||| ||||  |||||  | ||||||||||||||||||||||| ||||||||||    
T  2199 ctaaggtaagggtgggactaattttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgtt 2275  T

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Target: scaffold0676 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 2786 - 2710
Alignment:
Q  100 ttttgatgttttagaa-ttagggttcgaaactaaagttgattgttgaaagagtaggtaaactattgaattaacgtaa 175  Q
    |||||||||| ||||| |||||||| |||| |||| ||||||||||||||||||||||| ||  |||||||| ||||    
T  2786 ttttgatgttatagaaattagggtttgaaattaaaattgattgttgaaagagtaggtaatctgatgaattaaggtaa 2710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 2934 - 2858
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgtt 93  Q
    |||||||||||||||||||| | |||| |||| ||  ||  | ||||||||||||||||||||||| ||||||||||    
T  2934 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 2858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 5304 - 5380
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaaagggtttaaccatgtagttgtt 93  Q
    |||||||||||||||||||||| |||| ||||  |||||  | ||||||| ||||||||||||||| ||||||||||    
T  5304 ctaaggtaagggtgggactaactttctctaattttaagttgtataattcttaaaaagggtttaaccttgtagttgtt 5380  T

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Target: scaffold0461 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 12421 - 12354
Alignment:
Q  135 ttgattgttgaaagagtaggtaaactattgaattaacgtaagg-ggggagtctctattcatcataaggg 202  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||||| | |||||||| ||||||    
T  12421 ttgattgttgaaagagtaggtaaatcattgaattaacgtaaggaggggagt-tttattcatcgtaaggg 12354  T

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Target: scaffold0094 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 48288 - 48236
Alignment:
Q  172 gtaaggggggagtctctattcatcataagggtt-tatgatcatatgggtagtg 223  Q
    |||||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  48288 gtaaggggggagtctctattcaccataaggattgtatgatcatatgggtagtg 48236  T

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Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29198 - 29269
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    |||| |||||||||||||||||||||| ||||||||||| |||| ||||  |||||| | ||||||||||||    
T  29198 accgtcgatcatcaatactaaggtaagagtgggactaactttctctaattctaagtattttaattctgaaaa 29269  T

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Target: scaffold0819 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0819
Description:

Target: scaffold0819; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5436 - 5394
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttc 43  Q
    |||||||||||| ||| ||||||||||||||||||||||||||    
T  5436 accgccgatcattaattctaaggtaagggtgggactaaccttc 5394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 15340 - 15294
Alignment:
Q  3 cgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||    
T  15340 cgccgatcatcattactaaggtaagggtgggactaactttctctaat 15294  T

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Target: scaffold0878 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 3421 - 3527
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgta--attctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-a 114  Q
    |||||||||||||||||||| | |||| |||| ||  || ||||  ||||||||||||||||||||| ||||||||||  || ||||||||||| ||| |    
T  3421 ctaaggtaagggtgggactagctttctctaataatgcgt-tgtatgattctgaaaaagggtttaaccttgtagttgttgtta-gttttgatgttatagaa 3518  T
Q  115 attagggtt 123  Q
    |||||||||    
T  3519 attagggtt 3527  T

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Target: scaffold0379 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 3892 - 3945
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    |||||||||||| |||||||||||||  |||| || ||||||||||||||||||    
T  3892 ctaaggtaagggagggactaaccttcaataattatgagtatgtaattctgaaaa 3945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 10879 - 10840
Alignment:
Q  139 ttgttgaaagagtaggtaaactattgaattaacgtaaggg 178  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  10879 ttgttgaaaaagtaggtaaactattgaattaatgtaaggg 10840  T

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Target: scaffold0151 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 31161 - 31108
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||  ||||  | ||||||||||||||||||    
T  31161 ctaaggtaagggtgggactaaccttcaataattctgagtatgtaattctgaaaa 31108  T

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Target: scaffold0046 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 21763 - 21816
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtat 58  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||  |||||||    
T  21763 ccgatcatcaatactaaggtaaggatgggactaactttctctaattctaagtat 21816  T

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Target: scaffold1186 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 2030 - 1967
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aattagggtt 123  Q
    ||||||||||||||||||||||| ||||||||||  || ||||||||||| ||| ||||||||||    
T  2030 taattctgaaaaagggtttaaccttgtagttgttgtta-gttttgatgttatagaaattagggtt 1967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 1507 - 1475
Alignment:
Q  2 ccgccgatcatcaatactaaggtaagggtggga 34  Q
    |||||||||||||||||||||||||||||||||    
T  1507 ccgccgatcatcaatactaaggtaagggtggga 1475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11293 - 11245
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||| | ||||| |||| ||||    
T  11293 accgccgatcatcaatactaaggtaagggtgagtctaactttctctaat 11245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 10761 - 10813
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    ||||||||||||||||||||||||||  |||| || ||||||| |||||||||    
T  10761 ctaaggtaagggtgggactaaccttcaataattatgagtatgtgattctgaaa 10813  T

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Target: scaffold0174 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13707 - 13639
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaa 69  Q
    ||||| || ||||||||||| ||||||||||||| ||||||||  ||||  ||||||||| ||||||||    
T  13707 accgctgaccatcaatactacggtaagggtgggagtaaccttcaataattctaagtatgtgattctgaa 13639  T

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Target: scaffold0174; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 11567 - 11513
Alignment:
Q  114 aattagggttcgaaactaaagttgattgttgaaagagtaggtaaactattgaatt 168  Q
    ||||||| || |||| |||| | |||||||||||||||||||||||| |||||||    
T  11567 aattaggttttgaaattaaaatcgattgttgaaagagtaggtaaactgttgaatt 11513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 16461 - 16560
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatg-ttttag-aattagggttcgaaactaaagttga-ttgttgaaagagtaggta 156  Q
    ||||||||||||||||||||||| ||||||||||  |||| ||||||| ||  || |||||||||| || | |||| |||| ||||||||||||||||||    
T  16461 taattctgaaaaagggtttaaccttgtagttgttgttagg-tttgatgattagagaaattagggttagagattaaaattgatttgttgaaagagtaggta 16559  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 186238 - 186301
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aattagggtt 123  Q
    ||||||||||||||||||||||| ||||||||||  || ||||||||||| ||| ||||||||||    
T  186238 taattctgaaaaagggtttaaccttgtagttgttgtta-gttttgatgttatagaaattagggtt 186301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1434 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1434
Description:

Target: scaffold1434; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 1358 - 1389
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  1358 ctaaggtaagggtgggactaaccttctttaat 1389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 4993 - 4962
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  4993 ctaaggtaagggtgggactaaccttctttaat 4962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 2003 - 1936
Alignment:
Q  5 ccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagta-tgtaattctgaaaa 71  Q
    ||||||||||||||||||| ||||||||||||||| || | ||||  |||||| | ||||||||||||    
T  2003 ccgatcatcaatactaaggaaagggtgggactaactttatctaattctaagtattttaattctgaaaa 1936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 6003 - 5972
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  6003 ctaaggtaagggtgggactaaccttctttaat 5972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 398615 - 398584
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  398615 ctaaggtaagggtgggactaaccttctttaat 398584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1235 - 1197
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaac 39  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  1235 accgccgattatcaatactaaggtaagggtgtgactaac 1197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 12100 - 12166
Alignment:
Q  4 gccgatcatcaatactaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaa 70  Q
    ||||||| | ||| ||||||||||||||||||||||||||  ||||  | ||||||| |||||||||    
T  12100 gccgatcgttaatcctaaggtaagggtgggactaaccttcaataattctgagtatgtgattctgaaa 12166  T

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Target: scaffold0359 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 16386 - 16333
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    |||||||||||||||||||||| ||| |||||| ||||| | | ||||||||||    
T  16386 ctaaggtaagggtgggactaacattcattaatcttaagtctattattctgaaaa 16333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 17563 - 17596
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgtt 93  Q
    ||||||||||||||||||||||| ||||||||||    
T  17563 taattctgaaaaagggtttaaccttgtagttgtt 17596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15027 - 14990
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaa 38  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  15027 accgtcgatcatcaatactaaggtgagggtgggactaa 14990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17047 - 17010
Alignment:
Q  1 accgccgatcatcaatactaaggtaagggtgggactaa 38  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  17047 accgtcgatcatcaatactaaggtgagggtgggactaa 17010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 18285 - 18252
Alignment:
Q  60 taattctgaaaaagggtttaaccatgtagttgtt 93  Q
    ||||||||||||||||||||||| ||||||||||    
T  18285 taattctgaaaaagggtttaaccttgtagttgtt 18252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 135503 - 135556
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||  ||||  ||||| | ||||||||||||    
T  135503 ctaaggtaagggtgggactaaccttcactaattctaagtgtataattctgaaaa 135556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 499111 - 499058
Alignment:
Q  18 ctaaggtaagggtgggactaaccttctttaatcataagtatgtaattctgaaaa 71  Q
    ||||||||||||||||||||||||||  ||||  | ||||||| ||||||||||    
T  499111 ctaaggtaagggtgggactaaccttcaataattttgagtatgtgattctgaaaa 499058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 2186 - 2154
Alignment:
Q  125 gaaactaaagttgattgttgaaagagtaggtaa 157  Q
    ||||||||| |||||||||||||||||||||||    
T  2186 gaaactaaaattgattgttgaaagagtaggtaa 2154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 16279 - 16227
Alignment:
Q  172 gtaaggggggagtctctattcatcataagggtt-tatgatcatatgggtagtg 223  Q
    ||||||||| |||||||||||| || ||||||| ||||||||| |||||||||    
T  16279 gtaagggggaagtctctattcaccaaaagggttgtatgatcatgtgggtagtg 16227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 23932 - 23987
Alignment:
Q  68 aaaaagggtttaaccatgtagttgttaataggttttgatgttttag-aattagggtt 123  Q
    ||||||||||||||| ||||||||||| || ||||||||||| ||| ||||||||||    
T  23932 aaaaagggtttaaccttgtagttgttatta-gttttgatgttatagaaattagggtt 23987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 35550 - 35602
Alignment:
Q  172 gtaaggggggagtctctattcatcataagggtt-tatgatcatatgggtagtg 223  Q
    |||||||||||||||||||||| | |||||||| ||| | |||||||||||||    
T  35550 gtaaggggggagtctctattcagcgtaagggttgtatcaacatatgggtagtg 35602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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