View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2004_low_15 (Length: 227)

Name: NF2004_low_15
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2004_low_15
NF2004_low_15
[»] chr5 (4 HSPs)
chr5 (14-215)||(9929619-9929825)
chr5 (145-185)||(43554550-43554590)
chr5 (150-185)||(36577671-36577706)
chr5 (144-185)||(39695988-39696029)
[»] scaffold0168 (1 HSPs)
scaffold0168 (116-163)||(21358-21405)
[»] chr3 (3 HSPs)
chr3 (142-179)||(34307767-34307804)
chr3 (145-185)||(25326455-25326495)
chr3 (142-185)||(29508473-29508517)
[»] chr6 (2 HSPs)
chr6 (145-185)||(17168453-17168493)
chr6 (157-185)||(24832617-24832645)
[»] chr4 (5 HSPs)
chr4 (116-167)||(18844425-18844476)
chr4 (145-185)||(3144642-3144682)
chr4 (116-168)||(14126065-14126117)
chr4 (145-185)||(23386175-23386215)
chr4 (145-185)||(24343536-24343576)
[»] chr2 (4 HSPs)
chr2 (116-185)||(21616791-21616862)
chr2 (144-178)||(1239649-1239683)
chr2 (127-185)||(19574007-19574065)
chr2 (149-185)||(23354646-23354682)
[»] chr7 (3 HSPs)
chr7 (116-166)||(7328641-7328691)
chr7 (145-185)||(4017784-4017824)
chr7 (149-185)||(29812658-29812694)
[»] chr1 (1 HSPs)
chr1 (145-185)||(42004937-42004977)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 9929825 - 9929619
Alignment:
Q  14 catcaaatattgattttttcatccttgaacccatctacatgatttttgtcaattagatcaatttcaaatgttaattcatagcgtgcaagtacaagcagat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9929825 catcaaatattgattttttcatccttgaacccatctacatgatttttgtcaattagatcaatttcaaatgttaattcatagcatgcaagtacaagcagat 9929726  T
Q  114 ac-----atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacgacacatataattacactaaattaacatttgaaattaaaaacatgta 208  Q
     |     |||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9929725 gcaatctatgaagcacagacactcctcgaattagtcgtgtccgataccgacacgacacatataattacactgaattaacatttgaaattaaaaacatgta 9929626  T
Q  209 tctacct 215  Q
    |||||||    
T  9929625 tctacct 9929619  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 43554590 - 43554550
Alignment:
Q  145 gtgtccgacaccgacacgacacatataattacactaaatta 185  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  43554590 gtgtccgacaccgacacgacacctatgattacactaaatta 43554550  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 36577671 - 36577706
Alignment:
Q  150 cgacaccgacacgacacatataattacactaaatta 185  Q
    |||||||||||||||||||||||||| |||||||||    
T  36577671 cgacaccgacacgacacatataattatactaaatta 36577706  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 39695988 - 39696029
Alignment:
Q  144 cgtgtccgacaccgacacgacacatataattacactaaatta 185  Q
    |||||| |||||||||||||||| ||| ||||||||||||||    
T  39695988 cgtgtcggacaccgacacgacacctatgattacactaaatta 39696029  T

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Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 21405 - 21358
Alignment:
Q  116 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacga 163  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||    
T  21405 atgaagcacagacacttctcggattaggcgtgtctgacaccgacacga 21358  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 34307767 - 34307804
Alignment:
Q  142 gtcgtgtccgacaccgacacgacacatataattacact 179  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  34307767 gtcgtgtccgacaccgacacgacacttataattacact 34307804  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 25326495 - 25326455
Alignment:
Q  145 gtgtccgacaccgacacgacacatataattacactaaatta 185  Q
    |||||||||||| ||||||||  ||||||||||||||||||    
T  25326495 gtgtccgacaccaacacgacatctataattacactaaatta 25326455  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 29508517 - 29508473
Alignment:
Q  142 gtcgtgtccgacaccgaca-cgacacatataattacactaaatta 185  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||    
T  29508517 gtcgtgtccgacaccaacatcgacacatataattacactgaatta 29508473  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 17168453 - 17168493
Alignment:
Q  145 gtgtccgacaccgacacgacacatataattacactaaatta 185  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  17168453 gtgtccgacaccgacacgacacctattattacactaaatta 17168493  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 24832645 - 24832617
Alignment:
Q  157 gacacgacacatataattacactaaatta 185  Q
    |||||||||||||||||||||||||||||    
T  24832645 gacacgacacatataattacactaaatta 24832617  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 18844425 - 18844476
Alignment:
Q  116 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacgacaca 167  Q
    |||||||||  |||||||||||||||| ||||||||||||||| || |||||    
T  18844425 atgaagcacggacacttctcggattaggcgtgtccgacaccgatacaacaca 18844476  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 3144642 - 3144682
Alignment:
Q  145 gtgtccgacaccgacacgacacatataattacactaaatta 185  Q
    ||||| |||||||||||||||| ||| ||||||||||||||    
T  3144642 gtgtctgacaccgacacgacacctatgattacactaaatta 3144682  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 14126065 - 14126117
Alignment:
Q  116 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacgacacat 168  Q
    |||||||||| |||||  ||||||||| |||||||||||| ||||||| ||||    
T  14126065 atgaagcacatacactcttcggattaggcgtgtccgacacggacacgagacat 14126117  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 23386215 - 23386175
Alignment:
Q  145 gtgtccgacaccgacacgacacatataattacactaaatta 185  Q
    |||||||||||||||| ||||| ||| ||||||||||||||    
T  23386215 gtgtccgacaccgacatgacacctatgattacactaaatta 23386175  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 24343576 - 24343536
Alignment:
Q  145 gtgtccgacaccgacacgacacatataattacactaaatta 185  Q
    ||||| |||||||||||||||| |||||||||||| |||||    
T  24343576 gtgtcggacaccgacacgacacctataattacactgaatta 24343536  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 21616862 - 21616791
Alignment:
Q  116 atgaagcacaaacacttctcggattagtcgtgtccgacaccg-acacg-acacatataattacactaaatta 185  Q
    |||||||||  |||||||| ||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||    
T  21616862 atgaagcacggacacttcttggattagccgtgtccggcaccggacacgtacacatataattacactgaatta 21616791  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 1239649 - 1239683
Alignment:
Q  144 cgtgtccgacaccgacacgacacatataattacac 178  Q
    |||||| ||||||||||||||||||||||||||||    
T  1239649 cgtgtcggacaccgacacgacacatataattacac 1239683  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 19574065 - 19574007
Alignment:
Q  127 acacttctcggattagtcgtgtccgacaccgacacgacacatataattacactaaatta 185  Q
    ||||| |||| |||||  |||||||||||||||||| ||| |||||||||||| |||||    
T  19574065 acactcctcgaattaggtgtgtccgacaccgacacgccacctataattacactgaatta 19574007  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 23354646 - 23354682
Alignment:
Q  149 ccgacaccgacacgacacatataattacactaaatta 185  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  23354646 ccgacaccgacacgacacctatgattacactaaatta 23354682  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 7328641 - 7328691
Alignment:
Q  116 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacgacac 166  Q
    ||||||||| ||||||  ||||||||| ||||||||||||| |||||||||    
T  7328641 atgaagcacgaacactcatcggattaggcgtgtccgacaccaacacgacac 7328691  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 4017784 - 4017824
Alignment:
Q  145 gtgtccgacaccgacacgacacatataattacactaaatta 185  Q
    |||||||||||| ||||||||| ||| ||||||||||||||    
T  4017784 gtgtccgacaccaacacgacacttatgattacactaaatta 4017824  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 29812658 - 29812694
Alignment:
Q  149 ccgacaccgacacgacacatataattacactaaatta 185  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  29812658 ccgacaccgacacgacacctatgattacactaaatta 29812694  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 42004937 - 42004977
Alignment:
Q  145 gtgtccgacaccgacacgacacatataattacactaaatta 185  Q
    ||||||||||||||||| |||| ||| ||||||||||||||    
T  42004937 gtgtccgacaccgacacaacacctatgattacactaaatta 42004977  T

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