View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2004_low_2 (Length: 484)

Name: NF2004_low_2
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2004_low_2
NF2004_low_2
[»] chr8 (8 HSPs)
chr8 (11-336)||(40866294-40866619)
chr8 (336-468)||(40866112-40866246)
chr8 (257-335)||(7895149-7895227)
chr8 (258-334)||(44415934-44416010)
chr8 (258-336)||(42014306-42014384)
chr8 (252-336)||(38085941-38086025)
chr8 (257-331)||(24864608-24864682)
chr8 (259-332)||(9963285-9963358)
[»] chr4 (8 HSPs)
chr4 (254-336)||(50968241-50968323)
chr4 (257-336)||(6067669-6067748)
chr4 (258-331)||(34505290-34505363)
chr4 (257-336)||(31553694-31553773)
chr4 (257-336)||(33871036-33871115)
chr4 (258-332)||(4690134-4690208)
chr4 (258-331)||(52818059-52818132)
chr4 (257-331)||(6071145-6071218)
[»] chr6 (7 HSPs)
chr6 (257-336)||(3992802-3992881)
chr6 (257-336)||(7432415-7432494)
chr6 (257-336)||(7441932-7442011)
chr6 (257-336)||(7425620-7425699)
chr6 (259-332)||(7432982-7433055)
chr6 (257-336)||(7418529-7418608)
chr6 (257-336)||(7414580-7414659)
[»] chr3 (9 HSPs)
chr3 (257-331)||(29618312-29618386)
chr3 (254-336)||(41552097-41552179)
chr3 (257-336)||(11580203-11580282)
chr3 (259-331)||(1488013-1488085)
chr3 (259-331)||(2031252-2031324)
chr3 (259-331)||(35679472-35679544)
chr3 (257-331)||(35687869-35687943)
chr3 (257-331)||(52638656-52638730)
chr3 (257-304)||(35692217-35692264)
[»] chr2 (11 HSPs)
chr2 (258-332)||(3197568-3197642)
chr2 (257-336)||(4713105-4713184)
chr2 (256-331)||(24359790-24359865)
chr2 (254-337)||(34642998-34643081)
chr2 (256-331)||(39082467-39082542)
chr2 (257-336)||(8884447-8884526)
chr2 (251-331)||(42968144-42968224)
chr2 (257-332)||(36772397-36772472)
chr2 (257-332)||(36793511-36793586)
chr2 (257-332)||(37559326-37559401)
chr2 (257-331)||(36756170-36756244)
[»] chr7 (6 HSPs)
chr7 (255-332)||(37022194-37022271)
chr7 (255-336)||(46075147-46075228)
chr7 (254-336)||(25287957-25288039)
chr7 (257-335)||(30034301-30034379)
chr7 (259-336)||(46972134-46972211)
chr7 (254-331)||(34984430-34984507)
[»] chr1 (10 HSPs)
chr1 (256-336)||(30340906-30340986)
chr1 (254-333)||(23058051-23058130)
chr1 (255-340)||(37369502-37369588)
chr1 (259-333)||(23057679-23057753)
chr1 (259-333)||(23057864-23057938)
chr1 (259-333)||(23061980-23062054)
chr1 (258-336)||(30320740-30320818)
chr1 (264-317)||(23057568-23057621)
chr1 (264-317)||(23061869-23061922)
chr1 (259-332)||(43065996-43066074)
[»] chr5 (1 HSPs)
chr5 (257-332)||(2626071-2626146)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 40866619 - 40866294
Alignment:
Q  11 aagaaaaagatacaagctcatgagaagaaaaaatatgttatcaaacatgtcttcttttgttatatgagcatatatataagctgtaatttcaaaattctgt 110  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866619 aagaaaaatatacaagctcatgagaagaaaaaatatgttatcaaacatgtcttcttttgttatatgagcatatatataagctgtaatttcaaaattctgt 40866520  T
Q  111 tttgccaaatagggtcttactagtatttactgacatgaaataaaagatatttgaattaacttaaaattttaagaaacaagagaattccacttataannnn 210  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  40866519 tttaccaaatagggtcttactagtatttactgacatgaaataaaagatatttgaattaacttaaaattttaagaaacaagagaattccacttataatttt 40866420  T
Q  211 nnngatttcctaagagatatgtttataataatttaaattgaataacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggg 310  Q
       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866419 tttgatttcctaagagatatctttataataatttaaattgaataacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggg 40866320  T
Q  311 gttcgatcccccgcatctccattttt 336  Q
    ||||||||||||||||||||||||||    
T  40866319 gttcgatcccccgcatctccattttt 40866294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 336 - 468
Target Start/End: Complemental strand, 40866246 - 40866112
Alignment:
Q  336 tgattattatgaatttggatggagaaaagttacttacctgtggaagtgactttacatgatatacttatc--nnnnnnnnnnnntggttattgaatttttt 433  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||    
T  40866246 tgattattacgaatttggatggagaaaagttacttacctgtggaagtgactttacatgatatacttatcatatatatatatattggttattgaatttttt 40866147  T
Q  434 atgaataacaaaaagaaacatattaacgtggaagc 468  Q
    ||| |||||||||||||||||||||||||||||||    
T  40866146 atggataacaaaaagaaacatattaacgtggaagc 40866112  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 7895227 - 7895149
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 335  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  7895227 atggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccatttt 7895149  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 44415934 - 44416010
Alignment:
Q  258 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattt 334  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  44415934 tggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccattt 44416010  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 42014306 - 42014384
Alignment:
Q  258 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  42014306 tgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccattttt 42014384  T

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Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 38085941 - 38086025
Alignment:
Q  252 ataacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||| ||||    
T  38085941 ataatatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccactttt 38086025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 24864608 - 24864682
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  24864608 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 24864682  T

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Target: chr8; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 9963358 - 9963285
Alignment:
Q  259 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 332  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  9963358 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 9963285  T

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Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 50968323 - 50968241
Alignment:
Q  254 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968323 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 50968241  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 6067669 - 6067748
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||    
T  6067669 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgataccctgcatctccattttt 6067748  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 34505290 - 34505363
Alignment:
Q  258 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  34505290 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 34505363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 31553694 - 31553773
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||    
T  31553694 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccattttt 31553773  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 33871115 - 33871036
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||| ||||    
T  33871115 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccactttt 33871036  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 4690208 - 4690134
Alignment:
Q  258 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 332  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  4690208 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 4690134  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 52818059 - 52818132
Alignment:
Q  258 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||| ||| |||||||||    
T  52818059 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctcca 52818132  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 6071145 - 6071218
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||  | ||||| ||| |||||||||||||    
T  6071145 atggggatgtagctcaaatggtagagcgcttgctttgcatgcaagaggttcagggtttgat-ccccgcatctcca 6071218  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 3992881 - 3992802
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3992881 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 3992802  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 7432494 - 7432415
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||    
T  7432494 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccattttt 7432415  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 7442011 - 7441932
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||||||    
T  7442011 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcaactccattttt 7441932  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 7425699 - 7425620
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||| |||||| | ||| ||||||||||||||||||    
T  7425699 atggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtacggggattgataccccgcatctccattttt 7425620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 7433055 - 7432982
Alignment:
Q  259 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 332  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||| |||||| ||||| ||||||||||||||    
T  7433055 ggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacggggatcgataccccgcatctccat 7432982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 7418608 - 7418529
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||| |||||| || |||||||| ||||| |||||| |||||| | ||| |||| |||||||||||||    
T  7418608 atggggatgtagctcagatggtatagtgctcgcttagcatgtgagagggacggggattgataccccacatctccattttt 7418529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 7414659 - 7414580
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||| | |||||||||||||||||| ||||| |||||| | |||| ||||| ||  ||| ||||||||||    
T  7414659 atggggatgtagcttagatggtagagcgctcgcttagcatgtgagaggtatggggatcgataccttgcaactccattttt 7414580  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 29618312 - 29618386
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29618312 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 29618386  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 41552097 - 41552179
Alignment:
Q  254 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||    
T  41552097 aacatggggttgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcagctccaatttt 41552179  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 11580203 - 11580282
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||| ||||    
T  11580203 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccaatttt 11580282  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 1488013 - 1488085
Alignment:
Q  259 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  1488013 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 1488085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 2031252 - 2031324
Alignment:
Q  259 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  2031252 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 2031324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 35679472 - 35679544
Alignment:
Q  259 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    |||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  35679472 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 35679544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 35687869 - 35687943
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| | |||| ||||| |||||||||||||    
T  35687869 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatggggatcgataccccgcatctcca 35687943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 52638730 - 52638656
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||  |||||||||    
T  52638730 atggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccatgcatctcca 52638656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 35692217 - 35692264
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 304  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  35692217 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 35692264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 258 - 332
Target Start/End: Original strand, 3197568 - 3197642
Alignment:
Q  258 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3197568 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggtttgatcccccgcatctccat 3197642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 4713184 - 4713105
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||    
T  4713184 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctccagtttt 4713105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 24359790 - 24359865
Alignment:
Q  256 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  24359790 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 24359865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 34643081 - 34642998
Alignment:
Q  254 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttttg 337  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||||    
T  34643081 aacatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttttg 34642998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 39082467 - 39082542
Alignment:
Q  256 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  39082467 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 39082542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 8884447 - 8884526
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||    
T  8884447 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccattttt 8884526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 42968144 - 42968224
Alignment:
Q  251 aataacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||| |||||||||    
T  42968144 aataatatggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtacagggttcgataccctgcatctcca 42968224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 36772472 - 36772397
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 332  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  36772472 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 36772397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 36793586 - 36793511
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 332  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  36793586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 36793511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 37559401 - 37559326
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 332  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  37559401 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 37559326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 36756244 - 36756170
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  36756244 atggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 36756170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 37022271 - 37022194
Alignment:
Q  255 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 332  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  37022271 acatggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 37022194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 255 - 336
Target Start/End: Complemental strand, 46075228 - 46075147
Alignment:
Q  255 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||    
T  46075228 acatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccattttt 46075147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 25287957 - 25288039
Alignment:
Q  254 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||| ||||    
T  25287957 aacatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccactttt 25288039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 30034301 - 30034379
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 335  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  30034301 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 30034379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 46972211 - 46972134
Alignment:
Q  259 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  46972211 ggggacgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcgtctccattttt 46972134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 34984507 - 34984430
Alignment:
Q  254 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 331  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  34984507 aacaaggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 34984430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 30340986 - 30340906
Alignment:
Q  256 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||||||    
T  30340986 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtttgatcccctgcatctccattttt 30340906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 23058130 - 23058051
Alignment:
Q  254 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 333  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  23058130 aacaaggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccatt 23058051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 37369588 - 37369502
Alignment:
Q  255 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca-tttttgatt 340  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||| |||||||||    
T  37369588 acatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccactttttgatt 37369502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 23057753 - 23057679
Alignment:
Q  259 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 333  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  23057753 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccatt 23057679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 23057938 - 23057864
Alignment:
Q  259 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 333  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  23057938 gggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccctgcatctccatt 23057864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 23062054 - 23061980
Alignment:
Q  259 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 333  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  23062054 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccatt 23061980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 30320818 - 30320740
Alignment:
Q  258 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttt 336  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||| ||| ||||||||||||||    
T  30320818 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctccattttt 30320740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 23057621 - 23057568
Alignment:
Q  264 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgat 317  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  23057621 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23057568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 23061922 - 23061869
Alignment:
Q  264 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgat 317  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  23061922 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23061869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 43065996 - 43066074
Alignment:
Q  259 ggggatgtagctcaaatggtagagcgctcgc-----tttgcatgcgagaggcacggggttcgatcccccgcatctccat 332  Q
    |||||||||||||| ||||||||||||||||     || |||||||||||| |||||| ||||| ||||||||||||||    
T  43065996 ggggatgtagctcatatggtagagcgctcgcatcacttagcatgcgagaggtacggggctcgataccccgcatctccat 43066074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 2626146 - 2626071
Alignment:
Q  257 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 332  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  2626146 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 2626071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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