View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2004_low_3 (Length: 469)
Name: NF2004_low_3
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2004_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 49914503 - 49914936
Alignment:
| Q |
19 |
cctcctggattcgggccaccggcccgggttgaggatgacctcccggagtataatttttccggtagttcaaatccatcatcacacttggttcaaaaacata |
118 |
Q |
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| T |
49914503 |
cctcctggattcgggccaccagcccgggttgaggatgacctcccggagtataatttttccggtagttcaaatccatcatcacacttggttcaaaaacata |
49914602 |
T |
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| Q |
119 |
tgggaccaagtatggtcacatctcactcggttgtccaaaccccatcacgtcctgcacaacaaatgagagaacttgtacacaaatatgggcaaaacaaaac |
218 |
Q |
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| T |
49914603 |
tgggaccaagtatggtcacatctcactcggttgtccaaaccccatcacgtcctgcacaacaaatgagagaacttgtacacaaatatgggcaaaacaaaac |
49914702 |
T |
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| Q |
219 |
aactgtaacctcggtaaactggcaggacaaatttggggggtcaattcaaccctggaatgatgacgatgatgatataccagaatggcaacctcaaatcaac |
318 |
Q |
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| T |
49914703 |
aactgtaacctcggtaaactggcaggacaaatttggggggtcaattcaaccctggaatgatgacgatgatgatataccagaatggcaacctcaaatcaac |
49914802 |
T |
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| Q |
319 |
aaccagaatcagtttcctcctcaacaaacaatgaataattttcatcttagacctcatgttgtgaatcaatcatatgcgggtttaccccagcaatcaatta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49914803 |
aaccagaatcagtttcctcctcaacaaacaatgaataattttcatcttagacctcatgttgtgaatcaatcatatgcgggtttaccccagcaatcaatta |
49914902 |
T |
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| Q |
419 |
tgccgacacaatatctgcaaccccctatgaatgt |
452 |
Q |
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| T |
49914903 |
tgccgacacaatatctgcaaccccctatgaatgt |
49914936 |
T |
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