View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2004_low_5 (Length: 438)
Name: NF2004_low_5
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2004_low_5 |
 | |
|
| [»] scaffold1207 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 11196698 - 11197133
Alignment:
| Q |
1 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196698 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
11196797 |
T |
|
| Q |
101 |
accattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196798 |
accattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtcca |
11196897 |
T |
|
| Q |
201 |
gagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196898 |
gagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcatt |
11196997 |
T |
|
| Q |
301 |
gattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196998 |
gattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatcc |
11197097 |
T |
|
| Q |
401 |
ttcactgttgatccaaggtaagcttcatctctctcg |
436 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| |
|
|
| T |
11197098 |
ttcactgttgatccaaggtaagcttcagctatctcg |
11197133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 11156245 - 11156680
Alignment:
| Q |
1 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11156245 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactcattcacaaaatggttc |
11156344 |
T |
|
| Q |
101 |
accattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11156345 |
accattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctcaaatgtgagaatggacacgtcca |
11156444 |
T |
|
| Q |
201 |
gagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcatt |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156445 |
aagtaccacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcatt |
11156544 |
T |
|
| Q |
301 |
gattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatcc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156545 |
gattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatcc |
11156644 |
T |
|
| Q |
401 |
ttcactgttgatccaaggtaagcttcatctctctcg |
436 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
11156645 |
ttcactgttgatccaaggtaaacttcagctatctcg |
11156680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 11199863 - 11200293
Alignment:
| Q |
1 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11199863 |
ttttgctttctcgcaagcagacttctacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
11199962 |
T |
|
| Q |
101 |
accattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
11199963 |
accattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctcaaatgtgagaatggacacatcca |
11200062 |
T |
|
| Q |
201 |
gagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcatt |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11200063 |
gagtaccaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcatt |
11200162 |
T |
|
| Q |
301 |
gattattcgcataacattgaggccagcaataacacccgcatctcgagtggactgg----cgttgtgagtcattaaagtaagcaggcacagttataacaac |
396 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||| |||||||| ||||||||||| | ||||||| |||||||||| |
|
|
| T |
11200163 |
gattattcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaac |
11200262 |
T |
|
| Q |
397 |
atccttcactgttgatccaaggtaagcttca |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11200263 |
atccttcactgttgatccaaggtaagcttca |
11200293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 11161112 - 11161550
Alignment:
| Q |
1 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11161112 |
ttttgctttctcgcaagcagagttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
11161211 |
T |
|
| Q |
101 |
accattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
11161212 |
accattgtattatcaaagtcttgtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctcaaatgtgagaatagacacgtcca |
11161311 |
T |
|
| Q |
201 |
gagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggc----- |
295 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
11161312 |
aagtaccaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcatctgcagtaggctagta |
11161411 |
T |
|
| Q |
296 |
---tcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactgg----cgttgtgagtcattaaagtaagcaggcacagtt |
388 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||| |||||||| |||||||||| | ||||||| || |
|
|
| T |
11161412 |
gagtcattgattactcgcataacattaaggccaacaatagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaatt |
11161511 |
T |
|
| Q |
389 |
ataacaacatccttcactgttgatccaaggtaagcttca |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11161512 |
ataacaacatccttcactgttgatccaaggtaagcttca |
11161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 11170545 - 11170962
Alignment:
| Q |
1 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
100 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
11170545 |
ttttgctctctcgcaagcagtcttcagcctcctaatggctcttggatctccactaatgtcgagtttatgttttctcaagaactctttcacaaaatggttc |
11170644 |
T |
|
| Q |
101 |
accattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtcca |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||| |||| |||||||||||||||| |||||||||| |
|
|
| T |
11170645 |
accattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtcca |
11170744 |
T |
|
| Q |
201 |
gagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcatt |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
11170745 |
aagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcatt |
11170844 |
T |
|
| Q |
301 |
gattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatcc |
400 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11170845 |
gagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcc |
11170944 |
T |
|
| Q |
401 |
ttcactgttgatccaagg |
418 |
Q |
| |
|
| |||| ||||||||||| |
|
|
| T |
11170945 |
tccactattgatccaagg |
11170962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 11209367 - 11209784
Alignment:
| Q |
1 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
100 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||| ||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
11209367 |
ttttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatggttc |
11209466 |
T |
|
| Q |
101 |
accattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtcca |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||| |||||||||| |
|
|
| T |
11209467 |
accattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccatcctcaaatgtgagaacagacacgtcca |
11209566 |
T |
|
| Q |
201 |
gagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcatt |
300 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||| |||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
11209567 |
aagtaccaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgcagctgcagtaggctcatt |
11209666 |
T |
|
| Q |
301 |
gattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatcc |
400 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11209667 |
gagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatca |
11209766 |
T |
|
| Q |
401 |
ttcactgttgatccaagg |
418 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
11209767 |
tccactgttgatccaagg |
11209784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 418
Target Start/End: Original strand, 11275937 - 11276346
Alignment:
| Q |
9 |
tctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgt |
108 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11275937 |
tctcgcaagcagtcttcagcctcctaatggctcttggatctccactaatgtcatttttatgcttcctcaagaactctttcacaaaatggttcaccattgc |
11276036 |
T |
|
| Q |
109 |
attatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtacca |
208 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |||| |||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
11276037 |
attatcaaagtcttgtcccccgaggtgagtgtctcctccaatggccttaacattgatatcaccattctcaaaagtgagaacagacacgtccaaagtacca |
11276136 |
T |
|
| Q |
209 |
ccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattc |
308 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||||||||| |||||| ||| || |||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
11276137 |
ccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgcagctgcagtaggctcatttattattc |
11276236 |
T |
|
| Q |
309 |
gcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgt |
408 |
Q |
| |
|
||||||| || |||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
11276237 |
gcataacgtttaggccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgt |
11276336 |
T |
|
| Q |
409 |
tgatccaagg |
418 |
Q |
| |
|
| |||||||| |
|
|
| T |
11276337 |
taatccaagg |
11276346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 149 - 427
Target Start/End: Complemental strand, 11241491 - 11241213
Alignment:
| Q |
149 |
atcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgat |
248 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
11241491 |
atcgccttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgat |
11241392 |
T |
|
| Q |
249 |
taaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagt |
348 |
Q |
| |
|
||| || |||||||| ||| ||||||||||||||| |||||| ||||||| ||||||||| || ||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
11241391 |
taagagttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaat |
11241292 |
T |
|
| Q |
349 |
ggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241291 |
agactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca |
11241213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 426
Target Start/End: Original strand, 11132970 - 11133394
Alignment:
| Q |
2 |
tttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttca |
101 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||| || |||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
11132970 |
tttgctttctcacatgcagacttcaaccgtctaagggcttttcgatctccactaatgtcaattttatgcttcctcaagaactctttcacgaaatggttca |
11133069 |
T |
|
| Q |
102 |
ccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccag |
201 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| ||||| ||| | || ||| |||| || || || ||||||||||| ||||| |||| |
|
|
| T |
11133070 |
ccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaa |
11133169 |
T |
|
| Q |
202 |
agtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattg |
301 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||| | |||||| ||| |
|
|
| T |
11133170 |
tgtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttg |
11133269 |
T |
|
| Q |
302 |
attattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatcct |
401 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||| ||||||| ||| | |||||||| |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
11133270 |
attattcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatcct |
11133369 |
T |
|
| Q |
402 |
tcactgttgatccaaggtaagcttc |
426 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
11133370 |
tcactgttgatccaaggtaaacttc |
11133394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 11314926 - 11314688
Alignment:
| Q |
1 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||| ||||||||| || || |||| ||| |||||||| ||| |
|
|
| T |
11314926 |
ttttgctttctcgcaagctgacttcaacctcctaagggatgttaaatctccactaatgtctattttatacctcttccggaacacttccacaaaatatttc |
11314827 |
T |
|
| Q |
101 |
accattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtcca |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||| ||||| ||||| ||||||| ||||||||| ||||| |||| |
|
|
| T |
11314826 |
accattgtattattgaagtcttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctcaagtgtgagaatagacacatcca |
11314727 |
T |
|
| Q |
201 |
gagtaccaccacctaaatcaaaaatgaaaacatgtctac |
239 |
Q |
| |
|
|||||| ||||| ||||| || |||||||||| ||||| |
|
|
| T |
11314726 |
aagtaccgccacccaaatcgaagatgaaaacatttctac |
11314688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 11241615 - 11241511
Alignment:
| Q |
1 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241615 |
ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctctactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc |
11241516 |
T |
|
| Q |
101 |
accat |
105 |
Q |
| |
|
||||| |
|
|
| T |
11241515 |
accat |
11241511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 418
Target Start/End: Original strand, 871 - 1277
Alignment:
| Q |
9 |
tctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgt |
108 |
Q |
| |
|
|||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
871 |
tctcacaagcagtcttcagcctcctaacggctcttggatctccactaatgtcgattttatacttccttaagaacactttcacaaaatggttcaccattgc |
970 |
T |
|
| Q |
109 |
attatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtacca |
208 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||| |||| ||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
971 |
gttatcaaagtcttgccccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattctcaaatttgagaacagacacgtccaaagtacca |
1070 |
T |
|
| Q |
209 |
ccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattc |
308 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |||||| | ||||| |||||| |||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
1071 |
ccacctaagtcaaaaatgaaaacatttctatgtccatg---tgatggttttgtgtcaaagccatatgcaattgcagctgcagtaggctcattgagtattc |
1167 |
T |
|
| Q |
309 |
gcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgt |
408 |
Q |
| |
|
|| ||||||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
1168 |
ccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgt |
1267 |
T |
|
| Q |
409 |
tgatccaagg |
418 |
Q |
| |
|
|||||||||| |
|
|
| T |
1268 |
tgatccaagg |
1277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 12528558 - 12528622
Alignment:
| Q |
80 |
aactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcc |
144 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
12528558 |
aactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctcc |
12528622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 12528747 - 12528820
Alignment:
| Q |
269 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
342 |
Q |
| |
|
|||||||||| |||||||||| || || |||||||| || || ||||||||||||||||| ||||| ||||| |
|
|
| T |
12528747 |
ccatatgcaagagcagctgcagttggttcgttgattatccgtattacattgaggccagcaatgacaccagcatc |
12528820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 7542224 - 7542340
Alignment:
| Q |
24 |
tcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtcttg |
123 |
Q |
| |
|
|||||||||| | |||| |||||| ||||||||||| | ||| | ||| ||| |||||||| ||||| | |||| ||||| ||||||||||||||| |
|
|
| T |
7542224 |
tcaacctcctcaaggcttttggattcccactaatgtccactttgttctttctcttgaactcttgtacaaagtagttcgccattctattatcaaagtcttc |
7542323 |
T |
|
| Q |
124 |
tcccccaaggtgagtgt |
140 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
7542324 |
tccaccaaggtgagtgt |
7542340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 7542461 - 7542587
Alignment:
| Q |
261 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttg |
360 |
Q |
| |
|
||||||| |||||||||| || || |||| ||| ||||| ||| | ||||||||||||||||||||| ||||||||||| ||||| | ||||| |
|
|
| T |
7542461 |
tgtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatctatagtggcttttcgttg |
7542560 |
T |
|
| Q |
361 |
tgagtcattaaagtaagcaggcacagt |
387 |
Q |
| |
|
|| |||||||| |||||||| ||||| |
|
|
| T |
7542561 |
agaatcattaaaataagcaggtacagt |
7542587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 16657450 - 16657384
Alignment:
| Q |
261 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagc |
327 |
Q |
| |
|
||||||||||||||||||| || || |||| ||| |||||||| ||||| || ||||| |||||||| |
|
|
| T |
16657450 |
tgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagc |
16657384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 14703643 - 14703724
Alignment:
| Q |
261 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
342 |
Q |
| |
|
||||||| ||||||||||| || || || | ||| ||||| |||| | ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
14703643 |
tgtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc |
14703724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 332
Target Start/End: Complemental strand, 29577594 - 29577531
Alignment:
| Q |
269 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataa |
332 |
Q |
| |
|
|||||||||| |||||| |||| || ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
29577594 |
ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaataa |
29577531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 387
Target Start/End: Original strand, 39985876 - 39986007
Alignment:
| Q |
256 |
tttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactgg |
355 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| |||| ||||||||||| |||||||| ||||| || || |||||||| || ||||| || | || |
|
|
| T |
39985876 |
tttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttga |
39985975 |
T |
|
| Q |
356 |
cgttgtgagtcattaaagtaagcaggcacagt |
387 |
Q |
| |
|
|| || |||||||||||||||||||| ||||| |
|
|
| T |
39985976 |
cgctgggagtcattaaagtaagcagggacagt |
39986007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
| Q |
269 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
343 |
Q |
| |
|
||||| ||||| || || |||| ||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
3147515 |
ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct |
3147589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 8382801 - 8382727
Alignment:
| Q |
269 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
343 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
8382801 |
ccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct |
8382727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 8602217 - 8602291
Alignment:
| Q |
269 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
343 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||||| |||||||| |||||||| |||| |||||| |
|
|
| T |
8602217 |
ccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct |
8602291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 13333389 - 13333307
Alignment:
| Q |
261 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
343 |
Q |
| |
|
||||||| ||||||||||| || || |||| ||| |||||||||||||| || | ||| |||||||||||| |||| |||||| |
|
|
| T |
13333389 |
tgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct |
13333307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 13333561 - 13333503
Alignment:
| Q |
89 |
acaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgc |
147 |
Q |
| |
|
||||||| |||||||||| | ||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
13333561 |
acaaaatagttcaccattctgttatcgaagtcttctcccccaaggtgagtgtttcctgc |
13333503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 10494307 - 10494226
Alignment:
| Q |
261 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
342 |
Q |
| |
|
||||||| ||||||||||| || || |||| ||| ||||||||||| || || ||||| |||||||||||| |||| ||||| |
|
|
| T |
10494307 |
tgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc |
10494226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 7877903 - 7877783
Alignment:
| Q |
24 |
tcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtcttg |
123 |
Q |
| |
|
|||||||||||||||| || || | ||||| |||||| | ||||| ||||||| ||||| |||| |||||||||| |||| | ||||||||||| | |
|
|
| T |
7877903 |
tcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctc |
7877804 |
T |
|
| Q |
124 |
tcccccaaggtgagtgtctcc |
144 |
Q |
| |
|
||| || |||||||| ||||| |
|
|
| T |
7877803 |
tccacctaggtgagtatctcc |
7877783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 343
Target Start/End: Original strand, 8538306 - 8538353
Alignment:
| Q |
296 |
tcattgattattcgcataacattgaggccagcaataacacccgcatct |
343 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
8538306 |
tcattgattatccgcattacattgaggccagcaatgacaccagcatct |
8538353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 27830981 - 27830910
Alignment:
| Q |
88 |
cacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaac |
159 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| | ||| ||||||||||||| ||| ||| | |||||||| |
|
|
| T |
27830981 |
cacaaaatagttcaccatcctattatcaaagtcctctccaccaaggtgagtgtttccagcagttgccttaac |
27830910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 3147335 - 3147397
Alignment:
| Q |
97 |
gttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaac |
159 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||||| |||| |||||| || |||||||| |
|
|
| T |
3147335 |
gttcaccatcctattatcaaagtcctctcccccaaggtgggtgtttcctgcgatggccttaac |
3147397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 393
Target Start/End: Original strand, 6789749 - 6789879
Alignment:
| Q |
263 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtg |
362 |
Q |
| |
|
||||| |||||||||| ||||| || | || |||||||||||||| |||||||| || |||||||| |||| |||||| ||||| | ||||| | |
|
|
| T |
6789749 |
tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgag |
6789848 |
T |
|
| Q |
363 |
agtcattaaagtaagcaggcacagttataac |
393 |
Q |
| |
|
| ||||| || |||||||||||||| ||||| |
|
|
| T |
6789849 |
aatcattgaaataagcaggcacagtaataac |
6789879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 330
Target Start/End: Complemental strand, 8585639 - 8585570
Alignment:
| Q |
261 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
330 |
Q |
| |
|
||||||| ||||||||||| || || |||| || ||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
8585639 |
tgtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaat |
8585570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 330
Target Start/End: Original strand, 8628767 - 8628836
Alignment:
| Q |
261 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
330 |
Q |
| |
|
||||||| ||||||||||| || || |||| || ||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
8628767 |
tgtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaat |
8628836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 330
Target Start/End: Complemental strand, 27830808 - 27830739
Alignment:
| Q |
261 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
330 |
Q |
| |
|
||||||| ||||||||||| || || |||| |||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
27830808 |
tgtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaat |
27830739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 30775489 - 30775556
Alignment:
| Q |
263 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
330 |
Q |
| |
|
||||| ||||||||||| || ||||||| |||||||| ||||||| ||||||||| || |||||||| |
|
|
| T |
30775489 |
tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaat |
30775556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 35132683 - 35132809
Alignment:
| Q |
261 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttg |
360 |
Q |
| |
|
||||||| |||||||||| || || |||| ||| ||||| |||| || |||||||||| | ||||||||| |||| |||||| ||||| | ||||| |
|
|
| T |
35132683 |
tgtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatctatagtggcttttcgttg |
35132782 |
T |
|
| Q |
361 |
tgagtcattaaagtaagcaggcacagt |
387 |
Q |
| |
|
|| ||| |||| |||||||||||||| |
|
|
| T |
35132783 |
agaatcactaaaataagcaggcacagt |
35132809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 9335822 - 9335754
Alignment:
| Q |
263 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaata |
331 |
Q |
| |
|
||||| ||||||||||| || || |||| ||| ||||||||||| || || ||||| |||||||||||| |
|
|
| T |
9335822 |
tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaata |
9335754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 34466726 - 34466656
Alignment:
| Q |
261 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaata |
331 |
Q |
| |
|
||||||| ||||||||||| || || |||| || |||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
34466726 |
tgtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaata |
34466656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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