View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2004_low_8 (Length: 251)
Name: NF2004_low_8
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2004_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43815487 - 43815727
Alignment:
| Q |
1 |
ttgtttgccttgtaattcttccatacctgatcaagtgatgacatgaacattttattagctgctaacaaaattcattaatgacaaaacaccgttatttaag |
100 |
Q |
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| T |
43815487 |
ttgtttgccttgtaattcttccatacctgatcaagtgatgacatgaacattttattagctgctaacaaaattcattaacgacaaaacaccgttatttaag |
43815586 |
T |
|
| Q |
101 |
gcttgagtgagtgtaaatcttacattatggagtaccaaatttgaaccttgtggaaaaacaccgttatttttcccacaaacaatttcagtaaccaaaatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43815587 |
gcttgagtgagtgtaaatcttacattatggagtaccaaatttgaaccttgtggaaaaacaccgttatttttcccacaaacaatttcagtaaccaaaatac |
43815686 |
T |
|
| Q |
201 |
caaaagcatatatatctgccttctctgtcagttgtcctttg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
43815687 |
caaaagcatatatatctgccttctctgtcagttgtcctttg |
43815727 |
T |
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