View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2004_low_9 (Length: 249)
Name: NF2004_low_9
Description: NF2004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2004_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4570497 - 4570275
Alignment:
| Q |
1 |
atactcttgtttatgaagataatgaaggagacaagatgctagtaggggacgtgccgtggcagtaagtatcttatcaatgtgaatcttattctattcaata |
100 |
Q |
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| T |
4570497 |
atactcttgtttatgaagataatgaaggagacaagatgctagtaggggacgtgccgtggcagtaagtatcttatcaatgtgaatcttattctattcaata |
4570398 |
T |
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| Q |
101 |
tttatatactgtttatattctttgaatagtgtttcaatgccaatgcaaaattaacctttgttttttaaaactatagtatagtttcttgtgcttaacaatt |
200 |
Q |
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| T |
4570397 |
tttatatactgtttatattctttgaatagtgtttcaatgccaatgcaaaattaacctttgttttttaaaactatagtatagtttcttgtgcttaacaatt |
4570298 |
T |
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| Q |
201 |
aatactatatataactcttgtaa |
223 |
Q |
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| T |
4570297 |
actactatatataactcttgtaa |
4570275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 43337679 - 43337608
Alignment:
| Q |
1 |
atactcttgtttatgaagataatgaaggagacaagatgctagtaggggacgtgccgtggcagtaagtatctt |
72 |
Q |
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|||||||||| ||||| |||||||||||||||| |||||| || || || || || |||||||||| ||||| |
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| T |
43337679 |
atactcttgtatatgaggataatgaaggagacaggatgcttgttggtgatgtcccatggcagtaagcatctt |
43337608 |
T |
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