View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20050_high_12 (Length: 368)

Name: NF20050_high_12
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20050_high_12
NF20050_high_12
[»] chr4 (14 HSPs)
chr4 (1-368)||(44884203-44884570)
chr4 (30-194)||(44866409-44866573)
chr4 (14-194)||(44900978-44901158)
chr4 (16-197)||(44840586-44840767)
chr4 (33-194)||(44852029-44852191)
chr4 (207-303)||(33721673-33721768)
chr4 (224-299)||(16572251-16572325)
chr4 (209-313)||(18838737-18838839)
chr4 (209-272)||(31707409-31707473)
chr4 (209-304)||(34319546-34319639)
chr4 (209-273)||(2632406-2632469)
chr4 (240-272)||(40414168-40414200)
chr4 (222-304)||(54863918-54863999)
chr4 (222-272)||(25376917-25376968)
[»] scaffold0836 (1 HSPs)
scaffold0836 (229-313)||(3007-3090)
[»] chr1 (16 HSPs)
chr1 (209-350)||(36437260-36437399)
chr1 (209-305)||(42745537-42745631)
chr1 (209-306)||(17971422-17971518)
chr1 (239-293)||(17988374-17988426)
chr1 (221-307)||(9851885-9851969)
chr1 (245-302)||(31003677-31003732)
chr1 (221-304)||(3574720-3574802)
chr1 (209-304)||(28724024-28724117)
chr1 (221-293)||(39150252-39150323)
chr1 (222-304)||(27442444-27442525)
chr1 (239-293)||(31181143-31181195)
chr1 (227-300)||(46443700-46443772)
chr1 (209-258)||(26976631-26976681)
chr1 (224-293)||(52336931-52336998)
chr1 (222-305)||(32715686-32715767)
chr1 (240-287)||(42454964-42455009)
[»] chr7 (15 HSPs)
chr7 (209-305)||(41508093-41508188)
chr7 (223-303)||(12506703-12506782)
chr7 (240-298)||(2195805-2195861)
chr7 (221-306)||(14568349-14568433)
chr7 (223-303)||(12485271-12485350)
chr7 (209-302)||(7307436-7307529)
chr7 (223-307)||(20949064-20949146)
chr7 (209-293)||(37048580-37048663)
chr7 (209-304)||(46101272-46101366)
chr7 (242-293)||(46341502-46341551)
chr7 (224-293)||(9183312-9183380)
chr7 (271-306)||(17205121-17205156)
chr7 (244-305)||(943126-943185)
chr7 (269-305)||(6549220-6549256)
chr7 (239-298)||(14650190-14650247)
[»] chr8 (12 HSPs)
chr8 (209-307)||(36054807-36054904)
chr8 (209-303)||(30112485-30112578)
chr8 (209-313)||(31658838-31658941)
chr8 (209-305)||(8251229-8251324)
chr8 (221-302)||(1445349-1445429)
chr8 (209-305)||(36408245-36408339)
chr8 (209-305)||(38209579-38209674)
chr8 (240-307)||(40694224-40694288)
chr8 (246-300)||(30654260-30654312)
chr8 (209-305)||(11778031-11778126)
chr8 (240-304)||(16890363-16890425)
chr8 (271-304)||(35431579-35431612)
[»] chr6 (8 HSPs)
chr6 (209-313)||(180325-180428)
chr6 (224-307)||(606692-606774)
chr6 (221-305)||(19780224-19780307)
chr6 (209-272)||(34837210-34837274)
chr6 (225-305)||(3611555-3611633)
chr6 (209-290)||(6657887-6657966)
chr6 (209-261)||(1856786-1856839)
chr6 (240-287)||(12144091-12144136)
[»] chr3 (17 HSPs)
chr3 (209-313)||(32211849-32211952)
chr3 (209-307)||(40344990-40345087)
chr3 (224-304)||(8825433-8825511)
chr3 (209-306)||(46918523-46918618)
chr3 (209-293)||(25295112-25295195)
chr3 (42-139)||(12924152-12924249)
chr3 (221-307)||(45261355-45261439)
chr3 (212-305)||(43320194-43320286)
chr3 (209-296)||(49983558-49983644)
chr3 (209-307)||(30041366-30041462)
chr3 (221-304)||(35455302-35455383)
chr3 (240-346)||(27721330-27721433)
chr3 (221-303)||(17003648-17003729)
chr3 (225-293)||(47860605-47860672)
chr3 (226-293)||(43105935-43106000)
chr3 (248-314)||(18085649-18085712)
chr3 (271-307)||(36658967-36659003)
[»] scaffold1809 (1 HSPs)
scaffold1809 (209-304)||(557-651)
[»] chr5 (9 HSPs)
chr5 (225-303)||(6688782-6688859)
chr5 (224-313)||(3629284-3629371)
chr5 (211-293)||(10705029-10705109)
chr5 (209-293)||(3257269-3257352)
chr5 (224-300)||(27193009-27193084)
chr5 (209-272)||(11983641-11983705)
chr5 (210-304)||(11691120-11691211)
chr5 (210-307)||(4449428-4449526)
chr5 (240-304)||(19296249-19296311)
[»] chr2 (15 HSPs)
chr2 (209-307)||(40503866-40503963)
chr2 (225-351)||(38214059-38214185)
chr2 (209-307)||(40442709-40442806)
chr2 (209-350)||(19285828-19285968)
chr2 (209-301)||(38496470-38496561)
chr2 (223-305)||(3711912-3711992)
chr2 (209-303)||(21229486-21229580)
chr2 (221-293)||(3268803-3268874)
chr2 (221-293)||(3269362-3269433)
chr2 (221-293)||(3269921-3269992)
chr2 (240-304)||(39063686-39063748)
chr2 (209-314)||(31404930-31405033)
chr2 (209-272)||(34262733-34262797)
chr2 (224-292)||(40664240-40664307)
chr2 (240-272)||(28650286-28650318)
[»] scaffold0024 (1 HSPs)
scaffold0024 (209-312)||(154326-154428)
[»] scaffold0088 (1 HSPs)
scaffold0088 (225-305)||(51266-51345)
[»] scaffold0026 (1 HSPs)
scaffold0026 (209-273)||(68823-68886)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 44884203 - 44884570
Alignment:
Q  1 tttcagcttgttttatagattgataagtctgtgttttatgctttcagcacattcaatggaagaggcagaggccttgtgtgatcgattaggaattttcgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44884203 tttcagcttgttttatagattgataagtctgtgttttatgctttcagcacattcaatggaagaggcagaggccttgtgtgatcgattaggaattttcgta 44884302  T
Q  101 gacggaagattgcagtgtgtaggaaatccaaaggaggtacattgctcaagtgatatgctttatcaaaatatatttcaaaatgaaactattaaataggcgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44884303 gacggaagattgcagtgtgtaggaaatccaaaggaggtacattgctcaagtgatatgctttatcaaaatatatttcaaaatgaaactattaaataggtgg 44884402  T
Q  201 aactggactattaaaaaggcaaacattaaatgagggataaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatatagga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44884403 aactggactattaaaaaggcaaacattaaatgagggataaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatatagga 44884502  T
Q  301 ccaaaaactttttcgaattttattttataataaggactggaaggagtattagtatggacttaaaaata 368  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44884503 ccaaaaacttttttgaattttattttatattaaggactggaaggagtattagtatggacttaaaaata 44884570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 44866409 - 44866573
Alignment:
Q  30 tgtgttttatgctttcagcacattcaatggaagaggcagaggccttgtgtgatcgattaggaattttcgtagacggaagattgcagtgtgtaggaaatcc 129  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||| || |||||||| |||||||||||    
T  44866409 tgtgttttatgttttcagcacattctatggaagaggcagaagccttatgtgatcgattaggaatttttgtcgacggtagcttgcagtgcgtaggaaatcc 44866508  T
Q  130 aaaggaggtacattgctcaagtgatatgctttatcaaaatatatttcaaaatgaaactattaaat 194  Q
    ||||||||||||||| | || ||||||||||| ||||||| ||||||||||||||||| ||||||    
T  44866509 aaaggaggtacattgttaaactgatatgctttctcaaaatgtatttcaaaatgaaactgttaaat 44866573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 44900978 - 44901158
Alignment:
Q  14 tatagattgataagtctgtgttttatgctttcagcacattcaatggaagaggcagaggccttgtgtgatcgattaggaattttcgtagacggaagattgc 113  Q
    |||||||| |||| |||  |||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||| | || || ||||    
T  44900978 tatagattcataaatcttggttttatgttttcagcacattctatggaagaggcagaggctttatgtgatcgattaggaatttttgtaaatggtagcttgc 44901077  T
Q  114 agtgtgtaggaaatccaaaggaggtacattgctcaagtgatatgctttatcaaaatatatttcaaaatgaaactattaaat 194  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||| ||| |||||| | ||||||    
T  44901078 agtgtgtaggaaatccaaaggaggtacattgctaaagtgttattctttatcaaaatgtattccaacatgaaattgttaaat 44901158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 44840586 - 44840767
Alignment:
Q  16 tagattgataagtctgtgttttatgctttcagcacattcaatggaagaggcagaggccttgtgtgatcgattaggaattttcgtagacggaagattgcag 115  Q
    |||||||| || |||  |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||| | || || |||||     
T  44840586 tagattgacaaatcttggttttatgctttcagcacattctatggaagaggcagatgccttatgtgatcgattaggaatatttgtaaatggtagcttgcaa 44840685  T
Q  116 tgtgtaggaaatccaaaggaggtacattgctcaagtgatatgctttatcaaaatatatttcaaaatgaaactattaaatagg 197  Q
    ||  |||||||||||||||||||||||| ||| |||| ||||||||||  || | ||||||||||||||||| | |||||||    
T  44840686 tgcataggaaatccaaaggaggtacatttctctagtgttatgctttatggaactgtatttcaaaatgaaactttaaaatagg 44840767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 44852029 - 44852191
Alignment:
Q  33 gttttatgctttc-agcacattcaatggaagaggcagaggccttgtgtgatcgattaggaattttcgtagacggaagattgcagtgtgtaggaaatccaa 131  Q
    ||||||||||||  ||||||||| |||||||||||||| || || |||||||| ||||||||||| ||||| || || ||||||||||||||| ||||||    
T  44852029 gttttatgctttttagcacattctatggaagaggcagatgctttatgtgatcggttaggaatttttgtagatggtagcttgcagtgtgtaggatatccaa 44852128  T
Q  132 aggaggtacattgctcaagtgatatgctttatcaaaatatatttcaaaatgaaactattaaat 194  Q
    |||||||||  | ||  |||||||| ||||||| |||| ||||| ||||||||||| ||||||    
T  44852129 aggaggtacgctccttgagtgatatactttatcgaaatgtattttaaaatgaaacttttaaat 44852191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 33721673 - 33721768
Alignment:
Q  207 actattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggacca 303  Q
    |||||||||| |  |||||||||| ||| | || |||||||||||||||||||||||||| |||||||  |||||||||||||||||| |||||||||    
T  33721673 actattaaaaggataaacattaaacgagaggtagaaaagtcttttaaacaataactacacattaaaaa--ttgtgacattttcttataaataggacca 33721768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 16572325 - 16572251
Alignment:
Q  224 cattaaatgagggataaaaagt-cttttaaacaataactacaccttaaaaaagttgtgacattttcttatatatagg 299  Q
    |||||||||||||||||||| | || |||| |||||||||||||||||||  ||||||||||||||||||| |||||    
T  16572325 cattaaatgagggataaaaaattctgttaagcaataactacaccttaaaa--gttgtgacattttcttataaatagg 16572251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 313
Target Start/End: Complemental strand, 18838839 - 18838737
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaac 308  Q
    ||||||||||  || |||||||||||||   |||||||||||||||||||| || |||||  ||||||| ||||||||||| ||| |||| ||||||||     
T  18838839 tattaaaaagataatcattaaatgagggtagaaaagtcttttaaacaataattatacctt--aaaagttatgacattttctcataaatagaaccaaaaag 18838742  T
Q  309 ttttt 313  Q
    |||||    
T  18838741 ttttt 18838737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 31707409 - 31707473
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaa 272  Q
    |||||||||| |||||||||||| |||| || ||||||||| ||| |||||||||||||||||||    
T  31707409 tattaaaaagacaaacattaaataaggggtagaaaagtcttctaagcaataactacaccttaaaa 31707473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 34319639 - 34319546
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    ||||||||||  ||||||||||| ||||   |||||  ||||||||||||||  ||| |||||||  |||||||||||||||||| ||||||||||    
T  34319639 tattaaaaagaaaaacattaaataagggtagaaaagctttttaaacaataaccgcactttaaaaa--ttgtgacattttcttataaataggaccaa 34319546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 2632469 - 2632406
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaagtcttttaaacaataactacaccttaaaaa 273  Q
    |||||||||| ||| |||||||  ||| ||||||| | |||||||||||||||||||||||||||    
T  2632469 tattaaaaagacaatcattaaaaaagg-ataaaaaatattttaaacaataactacaccttaaaaa 2632406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 40414168 - 40414200
Alignment:
Q  240 aaaagtcttttaaacaataactacaccttaaaa 272  Q
    |||||||||||||||||||||||||||||||||    
T  40414168 aaaagtcttttaaacaataactacaccttaaaa 40414200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 304
Target Start/End: Complemental strand, 54863999 - 54863918
Alignment:
Q  222 aacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    ||||||||||||| | || ||||| |||||||||||||| |  |||||||||  |||||||| |||||||||| ||||||||||    
T  54863999 aacattaaatgagagttagaaaagccttttaaacaataaatgtaccttaaaa--gttgtgactttttcttataaataggaccaa 54863918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 25376917 - 25376968
Alignment:
Q  222 aacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaa 272  Q
    ||||||||||||||| || |||||||||||||||||||| || |||||||||    
T  25376917 aacattaaatgagggttagaaaagtcttttaaacaataattataccttaaaa 25376968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 313
Target Start/End: Complemental strand, 3090 - 3007
Alignment:
Q  229 aatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaacttttt 313  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  3090 aatgagggatagaaaagtcttttaaacaataactacaccttaaaa--gttgtgacattttcttataaataggaccaaaaacttttt 3007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 350
Target Start/End: Original strand, 36437260 - 36437399
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||||| || ||||||||||||||||||||| ||||||||| |||||||||  ||||||||  ||||||||||||||||||| ||||||||||||     
T  36437260 tattaaaaagacagacattaaatgagggataaaaaagtcttttaagcaataactat-ccttaaaa--gttgtgacattttcttataaataggaccaaaac 36437356  T
Q  308 ctttttcgaattttattttataataaggactggaaggagtatt 350  Q
     ||||| |||  || | ||||| ||||||| ||| ||||||||    
T  36437357 tttttttgaaaattttcttatattaaggaccggagggagtatt 36437399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 42745631 - 42745537
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||||||| || || | |||||  |||||||||||||||||| |||||||||||    
T  42745631 tattaaaaaggcaatccttaaatgagggataaaaagtattttaaacaataattatacttcaaaaa--ttgtgacattttcttataaataggaccaaa 42745537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 306
Target Start/End: Original strand, 17971422 - 17971518
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaa 306  Q
    |||| ||||| | ||||||||||||||| || |||||||||||||||||||| || |||||||||  |||||||| |||||||||| ||||||||||||    
T  17971422 tattgaaaagaccaacattaaatgagggttagaaaagtcttttaaacaataaatataccttaaaa--gttgtgactttttcttataaataggaccaaaa 17971518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 17988374 - 17988426
Alignment:
Q  239 aaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  17988374 aaaaagtcttttaaacaataactacacctt--aaaagttgtgacattttcttata 17988426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 307
Target Start/End: Original strand, 9851885 - 9851969
Alignment:
Q  221 aaacattaaatgagggataaaaag-tcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    ||||||||||| |||||||||||| || ||||| |||||||||||| ||||||  ||||||||||||||||||| ||||||| |||||    
T  9851885 aaacattaaat-agggataaaaaggtcatttaagcaataactacactttaaaa--gttgtgacattttcttataaataggacaaaaaa 9851969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 31003677 - 31003732
Alignment:
Q  245 tcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggacc 302  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||| ||||||||    
T  31003677 tcttttaaacagtaactacaccttaaaa--gttgtgacattttcttataaataggacc 31003732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 3574802 - 3574720
Alignment:
Q  221 aaacattaaatgagggataaa-aagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    |||||||||||||||| || | || | ||||||||||||||||||  ||  ||||||||||||||||||||||| ||||||||||    
T  3574802 aaacattaaatgaggggtagacaaattttttaaacaataactaca--tttgaaaagttgtgacattttcttataaataggaccaa 3574720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 28724024 - 28724117
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    ||||||||||  ||||||||| |||||| || |||||||||||||| ||||| | ||| |||||   |||||||| ||||||||||||| |||||||    
T  28724024 tattaaaaagataaacattaattgagggttagaaaagtcttttaaataataaatgcacattaaa---gttgtgactttttcttatatattggaccaa 28724117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 39150252 - 39150323
Alignment:
Q  221 aaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    ||||||||||| |||| || ||||||||||||| |||||||||||||||  |||||| |||| |||||||||||    
T  39150252 aaacattaaataaggggtagaaaagtcttttaagcaataactacacctt--aaaagtagtgatattttcttata 39150323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 304
Target Start/End: Original strand, 27442444 - 27442525
Alignment:
Q  222 aacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    ||||||||||||||| || |||||||||||||||| ||| || || ||||||  |||||||  |||||||||| ||||||||||    
T  27442444 aacattaaatgagggttagaaaagtcttttaaacactaaatatactttaaaa--gttgtgattttttcttataaataggaccaa 27442525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 31181143 - 31181195
Alignment:
Q  239 aaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    |||||||||||||||||||||||| |  ||  |||||||||||||||||||||||    
T  31181143 aaaaagtcttttaaacaataactataagtt--aaaagttgtgacattttcttata 31181195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 46443772 - 46443700
Alignment:
Q  227 taaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatatagga 300  Q
    ||||||||||||||||| || ||||||  ||||| ||||||||||||  |||||||| |||||||||| ||||||    
T  46443772 taaatgagggataaaaaagttttttaagtaataattacaccttaaaa--gttgtgacgttttcttataaatagga 46443700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 26976631 - 26976681
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataa-aaagtcttttaaacaata 258  Q
    |||||||||| |||| |||||||||||||||| ||| ||||||||||||||    
T  26976631 tattaaaaagacaaatattaaatgagggataacaaattcttttaaacaata 26976681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 52336931 - 52336998
Alignment:
Q  224 cattaaatgagggataaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    |||||||||| |||||||||   |||||| ||||||||| ||||||||| |  |||||||||||||||||    
T  52336931 cattaaatgaaggataaaaatgtttttaagcaataactataccttaaaaga--tgtgacattttcttata 52336998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 32715767 - 32715686
Alignment:
Q  222 aacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    ||||||||||||||| || ||||| |||||||||||||| |  |||||  |||| ||||||| |||||||||| |||||||||||    
T  32715767 aacattaaatgagggctagaaaagacttttaaacaataaat-gacctt--aaaatttgtgactttttcttataaataggaccaaa 32715686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 42454964 - 42455009
Alignment:
Q  240 aaaagtcttttaaacaataactacaccttaaaaaagttgtgacatttt 287  Q
    |||||||||||||||| | ||||||||||  |||||||||||||||||    
T  42454964 aaaagtcttttaaacattcactacacctt--aaaagttgtgacatttt 42455009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 41508188 - 41508093
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    |||||||||| |||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||  |||||| |||||||||||| ||||||||||    
T  41508188 tattaaaaagacaaacattaaataaggggtaaaaaagtcttttaagcaataactacaccttaaaaa--ttgtgatattttcttatatttaggaccaaa 41508093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 12506782 - 12506703
Alignment:
Q  223 acattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggacca 303  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||  ||||||||| | |||||||||||| ||||||||    
T  12506782 acattaaataagggatagaaaagtcttttgaacaataactacacctt--aaaagttgtaatattttcttatatttaggacca 12506703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 2195861 - 2195805
Alignment:
Q  240 aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatatag 298  Q
    |||||||||||||||||||||||||||||  ||||||| ||| ||||||||||||||||    
T  2195861 aaaagtcttttaaacaataactacacctt--aaaagttatgatattttcttatatatag 2195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 14568433 - 14568349
Alignment:
Q  221 aaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaa 306  Q
    |||||||||||||||| || |||||||||||||||||||| || | |||||||  ||||  || |||||||||||||||||||||||    
T  14568433 aaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaa--gttgaaactttttcttatatataggaccaaaa 14568349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 12485350 - 12485271
Alignment:
Q  223 acattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggacca 303  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||  ||||||||| | ||||| |||||| ||||||||    
T  12485350 acattaaataagggatagaaaagtcttttgaacaataactacacctt--aaaagttgtaatattttattatatttaggacca 12485271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 7307529 - 7307436
Alignment:
Q  209 tattaaaaaggcaaacattaaatgaggg--ataaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggacc 302  Q
    |||||||||  ||||| |||||| ||||  ||||||| ||||||||||||||||||| | ||||||  ||||||||||||||||||| ||| ||||    
T  7307529 tattaaaaaaacaaaccttaaataaggggcataaaaaatcttttaaacaataactactctttaaaa--gttgtgacattttcttataaatatgacc 7307436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 20949146 - 20949064
Alignment:
Q  223 acattaaatgagggataaaaag-tcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    ||||||||| |||||||||||  || ||||| |||||||||||||||||||  ||| ||||||||||||||| |||| ||||||||    
T  20949146 acattaaat-agggataaaaaaatcatttaagcaataactacaccttaaaa--gttatgacattttcttataaatagaaccaaaaa 20949064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 37048663 - 37048580
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    ||||||||||  ||||||||||| | || || |||||||||||||||||| ||||||| ||  ||||||||||| |||||||||||    
T  37048663 tattaaaaagataaacattaaataaagggtagaaaagtcttttaaacaatcactacacttt--aaaagttgtgatattttcttata 37048580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 46101272 - 46101366
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    |||||||| | ||| ||||||||||||| || ||||||||||| |  |||||||||| |||||||  ||| ||||||||||||||| ||| ||||||    
T  46101272 tattaaaatgacaatcattaaatgaggggtagaaaagtcttttgagtaataactacaacttaaaa--gttatgacattttcttataaataagaccaa 46101366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 46341551 - 46341502
Alignment:
Q  242 aagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    ||||||||||| |||||||||||||||  ||||||||||| |||||||||||    
T  46341551 aagtcttttaagcaataactacacctt--aaaagttgtgatattttcttata 46341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 9183312 - 9183380
Alignment:
Q  224 cattaaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    |||||||||| ||||||||| ||||| ||| ||||||||| ||||||||| |  |||||||||||||||||    
T  9183312 cattaaatgaaggataaaaatgtcttctaagcaataactataccttaaaaga--tgtgacattttcttata 9183380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 17205156 - 17205121
Alignment:
Q  271 aaaagttgtgacattttcttatatataggaccaaaa 306  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17205156 aaaagttgtgacattttcttataaataggaccaaaa 17205121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 943185 - 943126
Alignment:
Q  244 gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    ||||||| ||||||||||||||||  ||||| ||||| |||||||||||| ||| |||||||    
T  943185 gtcttttgaacaataactacacct--aaaaaattgtggcattttcttataaatatgaccaaa 943126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 6549220 - 6549256
Alignment:
Q  269 aaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  6549220 aaaaaagttgtgatattttcttataaataggaccaaa 6549256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 14650190 - 14650247
Alignment:
Q  239 aaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatatag 298  Q
    |||||||||||||  |||||| |||| ||||||||  |||||||||||||||||| ||||    
T  14650190 aaaaagtcttttatgcaataaatacatcttaaaaa--ttgtgacattttcttataaatag 14650247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 36054904 - 36054807
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||||| |||||||||| | |||| || |||||||||||||||||||| || |||||||||  ||||||||||||||||||| |||||||||||||    
T  36054904 tattaaaaagacaaacattaattaaggggtataaaagtcttttaaacaataaatataccttaaaa--gttgtgacattttcttataaataggaccaaaaa 36054807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 30112485 - 30112578
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaag-tcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggacca 303  Q
    |||||||||| || |||||||| ||||||||||||  |||||||| |||||||||||||||  |||| |||||||||||||||||| |||||||||    
T  30112485 tattaaaaagacatacattaaacgagggataaaaaaatcttttaagcaataactacacctt--aaaatttgtgacattttcttataaataggacca 30112578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 209 - 313
Target Start/End: Complemental strand, 31658941 - 31658838
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||||| |||||||||||| | || |||||| ||||||||||||||||||||| |||  ||||||||||| ||||||||||| |||| ||||| ||    
T  31658941 tattaaaaagacaaacattaaataaaggttaaaaaagtcttttaaacaataactacatctt--aaaagttgtgatattttcttataaatagaaccaacaa 31658844  T
Q  308 cttttt 313  Q
     |||||    
T  31658843 tttttt 31658838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 8251324 - 8251229
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaag-tcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    |||||||||| ||| |||||||| | ||  |||||| |||||||| |||||| ||||||||||||  ||||||| ||||||||||| |||||||||||    
T  8251324 tattaaaaagacaaccattaaataatggggaaaaaggtcttttaagcaataattacaccttaaaa--gttgtgatattttcttataaataggaccaaa 8251229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 1445429 - 1445349
Alignment:
Q  221 aaacattaaatgagggata-aaaagtcttttaaacaataact-acaccttaaaaaagttgtgacattttcttatatataggacc 302  Q
    ||||||||||| ||||||| ||||||| ||||| |||||||| |||||||||||  ||||||||||||||||||| ||||||||    
T  1445429 aaacattaaat-agggatagaaaagtcatttaagcaataacttacaccttaaaa--gttgtgacattttcttataaataggacc 1445349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 36408245 - 36408339
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    |||||||||| ||||||||||| ||||| |||||| || | ||||||||||| |  ||||||||   |||||||| |||||||||||||| |||||||    
T  36408245 tattaaaaagacaaacattaaacgagggttaaaaaagtttgttaaacaataaatgtaccttaaa---gttgtgactttttcttatatataagaccaaa 36408339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 38209579 - 38209674
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaa-aagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    |||| ||||| | ||||||||||||||| || | |||||||||||||||||| |  |||||||||  |||||||| |||||||||| ||| |||||||    
T  38209579 tattgaaaagaccaacattaaatgagggttagagaagtcttttaaacaataaatgtaccttaaaa--gttgtgactttttcttataaatatgaccaaa 38209674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 40694288 - 40694224
Alignment:
Q  240 aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    ||||||||||||| |||||| |||||||  |||||||||||| ||||||||||| ||| |||||||||    
T  40694288 aaaagtcttttaagcaataattacacct--aaaaagttgtgatattttcttataaata-gaccaaaaa 40694224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 30654260 - 30654312
Alignment:
Q  246 cttttaaacaataactacaccttaaaaaagttgtgacattttcttatatatagga 300  Q
    ||||||| |||||||||||| ||||||  ||||||| ||||||||||||||||||    
T  30654260 cttttaagcaataactacactttaaaa--gttgtgatattttcttatatatagga 30654312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 11778126 - 11778031
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataa-aaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    |||||||||| |||||||||||| |||| ||| |||||||||||   ||||  |||| ||||||||  ||||||| |||||||||| |||| ||||||    
T  11778126 tattaaaaagacaaacattaaataagggttaagaaagtcttttacgaaatagatacatcttaaaaa--ttgtgaccttttcttataaatagaaccaaa 11778031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 16890363 - 16890425
Alignment:
Q  240 aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    |||||||||| ||||| |||||| |||||||||  ||||||| |||||| |||| ||||||||||    
T  16890363 aaaagtctttgaaacactaactataccttaaaa--gttgtgatattttcatataaataggaccaa 16890425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 35431612 - 35431579
Alignment:
Q  271 aaaagttgtgacattttcttatatataggaccaa 304  Q
    ||||||||||||||||||||||| ||||||||||    
T  35431612 aaaagttgtgacattttcttataaataggaccaa 35431579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 209 - 313
Target Start/End: Complemental strand, 180428 - 180325
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||||| |||||||||||| |||| || ||||||||||||| ||||||||||| ||||||||  |||||| ||||||||||| |||||||||| ||    
T  180428 tattaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaa--ttgtgatattttcttataaataggaccaacaa 180331  T
Q  308 cttttt 313  Q
     |||||    
T  180330 attttt 180325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 606692 - 606774
Alignment:
Q  224 cattaaatgagggat-aaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||| |||||| ||||||| |||||| | |||| ||||||||||||  ||||||||||||||||||| |||||||||||||    
T  606692 cattaaataagggattaaaaagtattttaagctataagtacaccttaaaa--gttgtgacattttcttataaataggaccaaaaa 606774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 19780307 - 19780224
Alignment:
Q  221 aaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    |||||||||||||||| || |||||||||||||||||||| || | |||||||  ||||  || ||||||||||||||||||||||    
T  19780307 aaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaa--gttgaaactttttcttatatataggaccaaa 19780224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 34837210 - 34837274
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaa-agtcttttaaacaataactacaccttaaaa 272  Q
    |||||||||| ||| |||||||| |||| ||||| |||||||||||||||| |||||||||||||    
T  34837210 tattaaaaagacaagcattaaataaggggtaaaaaagtcttttaaacaatagctacaccttaaaa 34837274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 3611633 - 3611555
Alignment:
Q  225 attaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    ||||||||||||||| |||| | |||||||||||||||| ||||||||   ||||| ||||||||||||| |||||| ||||    
T  3611633 attaaatgagggatagaaaaatattttaaacaataactataccttaaa---gttgtaacattttcttataaataggatcaaa 3611555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 6657966 - 6657887
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttctt 290  Q
    |||||||||| ||||||||||||||||| || ||||||| |||||||||||| |  |||||   ||||||||||| |||||||    
T  6657966 tattaaaaagacaaacattaaatgagggttagaaaagtcatttaaacaataaatgtacctt---aaagttgtgactttttctt 6657887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 1856839 - 1856786
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataact 261  Q
    ||||||||||  ||| |||||||||| |||| ||||||||||||||||||||||    
T  1856839 tattaaaaagagaaatattaaatgagagatagaaaagtcttttaaacaataact 1856786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 12144091 - 12144136
Alignment:
Q  240 aaaagtcttttaaacaataactacaccttaaaaaagttgtgacatttt 287  Q
    |||||||||||||| ||||| |||||||||||||  ||||||||||||    
T  12144091 aaaagtcttttaaataataattacaccttaaaaa--ttgtgacatttt 12144136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 209 - 313
Target Start/End: Original strand, 32211849 - 32211952
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||||| |||||||||||| | || || |||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||| |||||| ||    
T  32211849 tattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacacctt--aaaagttgtgaaattttcttataaataagaccaacaa 32211946  T
Q  308 cttttt 313  Q
     |||||    
T  32211947 tttttt 32211952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 307
Target Start/End: Original strand, 40344990 - 40345087
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||||| |||| |||||||||||| || |||||||| |||| |||| ||||||||||||||  ||||||||||||||||||| |||||| ||||||    
T  40344990 tattaaaaagacaaatattaaatgaggggtataaaagtctcttaagcaatgactacaccttaaaa--gttgtgacattttcttatagataggaacaaaaa 40345087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 8825433 - 8825511
Alignment:
Q  224 cattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||||   |||||||||||||||||| ||||||||||    
T  8825433 cattaaatgaaggatagaaaagtcttttaagcaataactacaccttaaaa---ttgtgacattttcttataaataggaccaa 8825511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 306
Target Start/End: Original strand, 46918523 - 46918618
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaa 306  Q
    |||||||||| || ||||||||||| ||||||||| ||||||||| |||||||||  |||||||||  |||||||||||||||||| ||||||||||||    
T  46918523 tattaaaaagacagacattaaatgaaggataaaaaagtcttttaagcaataactat-ccttaaaaa--ttgtgacattttcttataaataggaccaaaa 46918618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 209 - 293
Target Start/End: Original strand, 25295112 - 25295195
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaa-agtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    ||||||||||  || ||||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||| |||||||||||||    
T  25295112 tattaaaaagagaagcattaaatgagggataaaaaagtcttttaaacaataattacacctt--aaaagttgtaacattttcttata 25295195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 12924249 - 12924152
Alignment:
Q  42 tttcagcacattcaatggaagaggcagaggccttgtgtgatcgattaggaattttcgtagacggaagattgcagtgtgtaggaaatccaaaggaggta 139  Q
    ||||||||||||| |||||||||||||| | | | || |||||||||||||| || |||||||| || || |||||| ||||||||||||| ||||||    
T  12924249 tttcagcacattccatggaagaggcagaagtcctatgcgatcgattaggaatatttgtagacggtagctttcagtgtataggaaatccaaaagaggta 12924152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 45261439 - 45261355
Alignment:
Q  221 aaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    ||||||||||| ||||||| ||||||| ||||| ||||||||||| |||||||  ||||||||||||||||||| |||||||||||||    
T  45261439 aaacattaaat-agggatagaaaagtcatttaagcaataactacagcttaaaa--gttgtgacattttcttataaataggaccaaaaa 45261355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 305
Target Start/End: Original strand, 43320194 - 43320286
Alignment:
Q  212 taaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    ||||||| |||||||| |||  ||| || ||||||||||||||||||||| |||||||  ||||||||||||||||||||||| ||||| |||||    
T  43320194 taaaaagacaaacattgaataggggctagaaaagtcttttaaacaataaccacacctt--aaaagttgtgacattttcttataaataggtccaaa 43320286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 49983644 - 49983558
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatat 296  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||||||| |  | |||  |||||||||||| |||||||||||||    
T  49983644 tattaaaaagacaaacattaaatgagggttagaaaagtcttttaaacaataaatgtatctt--aaaagttgtgactttttcttatatat 49983558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 307
Target Start/End: Original strand, 30041366 - 30041462
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||||| |||||||||| | |||| || |||||||||||||||||||| || |||||   |||||||| || |||||| |||||| ||||||||||    
T  30041366 tattaaaaagacaaacattaattaagggttagaaaagtcttttaaacaataaatatacctt---aaagttgtcactttttctaatatattggaccaaaaa 30041462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 35455383 - 35455302
Alignment:
Q  221 aaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    ||||||||||| ||||||| ||||||| ||||| |||||| ||||||||||||  ||||||||||||||||||| ||| ||||||    
T  35455383 aaacattaaat-agggatagaaaagtcatttaagcaataattacaccttaaaa--gttgtgacattttcttataaataagaccaa 35455302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 346
Target Start/End: Complemental strand, 27721433 - 27721330
Alignment:
Q  240 aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaactttttcgaattttattttataataaggactg 339  Q
    ||||||||||||||||||||| |||| | ||||   |||||||||||||||||| ||||||| ||||| ||||| ||| ||| | |||||  |||||| |    
T  27721433 aaaagtcttttaaacaataacaacacataaaaa---ttgtgacattttcttataaataggacaaaaaatttttttgaactttttcttatataaaggaccg 27721337  T
Q  340 gaaggag 346  Q
    || ||||    
T  27721336 gagggag 27721330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 17003648 - 17003729
Alignment:
Q  221 aaacattaaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgaca-ttttcttatatataggacca 303  Q
    ||||||||||| ||||||||||| ||| ||||| |||||||||||||||  ||||||||||||| |||| ||||| |||||||||    
T  17003648 aaacattaaat-agggataaaaaagtcatttaagcaataactacacctt--aaaagttgtgacattttttttataaataggacca 17003729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 47860672 - 47860605
Alignment:
Q  225 attaaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    ||||||||| ||||||||| |||||||||  |||||||| ||||||||| |  |||||||||||||||||    
T  47860672 attaaatgaaggataaaaatgtcttttaagtaataactataccttaaaaga--tgtgacattttcttata 47860605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 43105935 - 43106000
Alignment:
Q  226 ttaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    ||||||||||| || |||||||||||||||||||| || |||||  |||||||||||| ||||||||||    
T  43105935 ttaaatgagggttagaaaagtcttttaaacaataaata-acctt--aaaagttgtgactttttcttata 43106000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 18085649 - 18085712
Alignment:
Q  248 tttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaactttttc 314  Q
    |||||| ||||||||||||||||||   |||||| ||||||||||| |||||| ||| || ||||||    
T  18085649 tttaaataataactacaccttaaaa---ttgtgatattttcttataaataggaacaacaaatttttc 18085712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 36659003 - 36658967
Alignment:
Q  271 aaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  36659003 aaaagttgtgacattttcttataaataggacaaaaaa 36658967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 557 - 651
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaa-agtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    |||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||| ||||||||||  |||||||||    
T  557 tattaaaacgacaatcattaaatgagggataaaaaagtcttttaaacaataactacacctt--aaatgttgtgactttttcttataattaggaccaa 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 6688859 - 6688782
Alignment:
Q  225 attaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggacca 303  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||    
T  6688859 attaaataagggatagaaaagtcttttaaacaataactacacctt--aaaagttgtgatattttcttatatttaggacca 6688782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 3629284 - 3629371
Alignment:
Q  224 cattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaacttttt 313  Q
    |||||||| ||||||| |||||||||||||  ||||||||||||||  ||||||||||||||||||||||| || ||| ||||||||||||    
T  3629284 cattaaattagggatacaaaagtcttttaagtaataactacacctt--aaaagttgtgacattttcttataaattgga-caaaaacttttt 3629371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 10705109 - 10705029
Alignment:
Q  211 ttaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    |||||||| ||| |||||||| ||||||| |||||||||||||| || ||||||||||||||||  ||||||||||||||||||    
T  10705109 ttaaaaagacaagcattaaattagggatagaaaagtcttttaaataa-aactacaccttaaaaa--ttgtgacattttcttata 10705029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 293
Target Start/End: Original strand, 3257269 - 3257352
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    |||||||||| |||||||||||| || |||| |||||||||||||||||||  ||| ||||  ||||||||||| |||||||||||    
T  3257269 tattaaaaagacaaacattaaataagagatagaaaagtcttttaaacaatagttacgcctt--aaaagttgtgatattttcttata 3257352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 27193084 - 27193009
Alignment:
Q  224 cattaaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatatagga 300  Q
    |||||||||| ||||||||| ||||||||||||||||||| | |||  |||||||||||||||| |||||| ||||||    
T  27193084 cattaaatgaaggataaaaaagtcttttaaacaataactatatctt--aaaagttgtgacatttccttataaatagga 27193009  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 11983641 - 11983705
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaag-tcttttaaacaataactacaccttaaaa 272  Q
    ||||||||||  |||||||||||||||| ||||||  ||||||||||||||| ||||||||||||    
T  11983641 tattaaaaagagaaacattaaatgaggggtaaaaaaatcttttaaacaataattacaccttaaaa 11983705  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 11691120 - 11691211
Alignment:
Q  210 attaaaaaggcaaacattaaatgagggataaaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    |||||||||  |||||||||||||||||| | |||||||||||  |||||||||||||  ||||| ||| |||||||  ||||| ||||||||||    
T  11691120 attaaaaagagaaacattaaatgagggat-agaagtcttttaagaaataactacacct--aaaaaattgcgacatttgtttataaataggaccaa 11691211  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 4449526 - 4449428
Alignment:
Q  210 attaaaaaggcaaacatt-aaatgagggataaaaagtcttttaaacaataactacac--cttaaaaaagttgtgacattttcttatatataggaccaaaa 306  Q
    ||||||||| |||||||| |||||||||  ||||||||||||||  ||||| |||||  ||||||||  |||||||||||||||||| ||| ||| ||||    
T  4449526 attaaaaagacaaacattgaaatgagggtaaaaaagtcttttaagaaataaatacacaccttaaaaa--ttgtgacattttcttataaataagacgaaaa 4449429  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 19296249 - 19296311
Alignment:
Q  240 aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    ||||||||||||| |||||||||||| ||  ||||||||||||||||| ||||||  ||||||||    
T  19296249 aaaagtcttttaagcaataactacacttt--aaaagttgtgacatttttttatattgaggaccaa 19296311  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 40503963 - 40503866
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||||| |||||| ||||| |||| || |||||| ||||||||||||| ||||||||||||  ||||||||||||||||||| || ||||||||||    
T  40503963 tattaaaaagacaaacaataaataaggggtataaaagttttttaaacaataattacaccttaaaa--gttgtgacattttcttataaatgggaccaaaaa 40503866  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 351
Target Start/End: Complemental strand, 38214185 - 38214059
Alignment:
Q  225 attaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaa-actttttcgaatttta 322  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||  |||||||||||  |||||||||| || |||||||||   ||||| ||| |||     
T  38214185 attaaatgagggatataaaagtcttttaaacaataaatacacctt--aaaagttgtgaatttttcttataaattggaccaaaatttttttttgaaatttt 38214088  T
Q  323 ttttataataaggactggaaggagtatta 351  Q
    | ||||||||||||| | | |||||||||    
T  38214087 tcttataataaggaccgaagggagtatta 38214059  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 40442806 - 40442709
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    ||||||||||  ||||| ||||| |||| || |||||| ||||||||||||| ||||||||||||  ||||||||||||||||||| |||||| ||||||    
T  40442806 tattaaaaagataaacaataaataaggggtataaaagttttttaaacaataattacaccttaaaa--gttgtgacattttcttataaataggatcaaaaa 40442709  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 350
Target Start/End: Complemental strand, 19285968 - 19285828
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||| ||||| |||| ||||||||| ||||| ||||||||||||  |||||||||||||||  |||| |||||||| || |||||| |||||||||||      
T  19285968 tattgaaaagacaaatattaaatgaaggatataaaagtcttttatgcaataactacacctt--aaaacttgtgacaattacttataaataggaccaaatt 19285871  T
Q  308 ctttttcgaattttattttataataaggactggaaggagtatt 350  Q
     ||||| |||  || | ||||||||||||  ||| ||||||||    
T  19285870 tttttttgaaaattttcttataataaggatcggagggagtatt 19285828  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 38496561 - 38496470
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaag-tcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggac 301  Q
    |||||||||  ||||| |||||| |||| || |||| |||||||||||||||||| ||||||||||  || ||||||||||||||| |||||||    
T  38496561 tattaaaaatacaaacgttaaataaggggtagaaaggtcttttaaacaataactataccttaaaaa--ttctgacattttcttataaataggac 38496470  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 3711912 - 3711992
Alignment:
Q  223 acattaaatgagggataaaaa-gtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    ||||||||| || |||||||| |||||||||||||||||||  ||||||||  ||||||||||||||||||| |||| ||||||    
T  3711912 acattaaataagcgataaaaaagtcttttaaacaataactat-ccttaaaa--gttgtgacattttcttataaatagaaccaaa 3711992  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 21229580 - 21229486
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggacca 303  Q
    |||||||||| || | |||||| ||||| || |||||||||||||  | ||||||||||||||||||||||||||  ||||||||| |||| ||||    
T  21229580 tattaaaaagacacatattaaacgaggggtagaaaagtcttttaagta-taactacaccttaaaaaagttgtgacgatttcttataaatagtacca 21229486  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 3268874 - 3268803
Alignment:
Q  221 aaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    ||||||||||| |||| || ||||||||||||  |||||||||||||||  ||||||||||| |||||||||||    
T  3268874 aaacattaaataaggggtagaaaagtcttttaggcaataactacacctt--aaaagttgtgatattttcttata 3268803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 3269433 - 3269362
Alignment:
Q  221 aaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    ||||||||||| |||| || ||||||||||||  |||||||||||||||  ||||||||||| |||||||||||    
T  3269433 aaacattaaataaggggtagaaaagtcttttaggcaataactacacctt--aaaagttgtgatattttcttata 3269362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 3269992 - 3269921
Alignment:
Q  221 aaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttata 293  Q
    ||||||||||| |||| || ||||||||||||  |||||||||||||||  ||||||||||| |||||||||||    
T  3269992 aaacattaaataaggggtagaaaagtcttttaggcaataactacacctt--aaaagttgtgatattttcttata 3269921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 39063686 - 39063748
Alignment:
Q  240 aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaa 304  Q
    |||||||||||||||||||| ||||||||  |||||||||||  |||||||||| || |||||||    
T  39063686 aaaagtcttttaaacaataaatacacctt--aaaagttgtgaatttttcttataaattggaccaa 39063748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 31405033 - 31404930
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||||| |||| |||||||||||| || |||||||||||||| ||||| |  ||||||||||   | |||| ||||||||||| | |||||||| |    
T  31405033 tattaaaaagacaaatattaaatgagggttagaaaagtcttttaaaaaataaatgtaccttaaaaa---tatgactttttcttatattttggaccaaata 31404937  T
Q  308 ctttttc 314  Q
     ||||||    
T  31404936 atttttc 31404930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 34262797 - 34262733
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaa 272  Q
    |||||||||| |||||||||| |||||| || |||||||||||||||||||| |  |||||||||    
T  34262797 tattaaaaagacaaacattaattgagggttagaaaagtcttttaaacaataaatgaaccttaaaa 34262733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 40664307 - 40664240
Alignment:
Q  224 cattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttat 292  Q
    |||||||||||||||| |||||||||||||| ||||| ||||| ||  || |||||||| ||||||||||    
T  40664307 cattaaatgagggatataaaagtcttttaaataataaatacacttt--aagagttgtgaaattttcttat 40664240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 28650286 - 28650318
Alignment:
Q  240 aaaagtcttttaaacaataactacaccttaaaa 272  Q
    |||||||||||||| ||||||||||||||||||    
T  28650286 aaaagtcttttaaataataactacaccttaaaa 28650318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 154428 - 154326
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggataaaaag-tcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 307  Q
    |||||||||| |||||||||||| |  | ||||||| ||||||||||||||||||||||||  ||||||||| | ||||||||||| |||| ||||||||    
T  154428 tattaaaaagacaaacattaaataaaaggtaaaaaggtcttttaaacaataactacacctt--aaaagttgtaatattttcttataaatagaaccaaaaa 154331  T
Q  308 ctttt 312  Q
     ||||    
T  154330 atttt 154326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 51345 - 51266
Alignment:
Q  225 attaaatgagggataaaaag-tcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 305  Q
    |||||||||||||||||||  |||||||| |||||| ||||||||||||  |||||||||||| |||||| |||| ||||||    
T  51345 attaaatgagggataaaaaaatcttttaagcaataaatacaccttaaaa--gttgtgacatttacttataaatagaaccaaa 51266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 68886 - 68823
Alignment:
Q  209 tattaaaaaggcaaacattaaatgagggat-aaaaagtcttttaaacaataactacaccttaaaaa 273  Q
    |||||||| | |||||||||||||||| || ||||||||||||||  |||||||||||||||||||    
T  68886 tattaaaacgacaaacattaaatgaggaataaaaaagtcttttaa--aataactacaccttaaaaa 68823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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