View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_high_13 (Length: 350)
Name: NF20050_high_13
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 12 - 334
Target Start/End: Original strand, 39123360 - 39123682
Alignment:
| Q |
12 |
aacctgtgtcttgcttgtcaatgcccaatcacgttgatagtaagtagtaacagtcatagggagagtagtagtgagacatggccatcattttattcaattt |
111 |
Q |
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| T |
39123360 |
aacctgtgtcttgcttgtcaatgcccaatcacgttgatagtaagtagtaacagtcatagggagagtagtagtgagacatggccatcattttattcaattt |
39123459 |
T |
|
| Q |
112 |
gacttggtttaatatcttacaaaagaaaaaagcagggtcaaatcagttcctttggatttataagggagaagaatgaaactgtttaaatatgctactcatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39123460 |
gacttggtttaatatcttacaaaagaaaaaagcagggtcaaatcagttcctttggatttataagggagaagaatgaaactgtttaaatatgctactcatt |
39123559 |
T |
|
| Q |
212 |
ttaaggcgtgtaactctgtgttcacttcacatattaatgtgataattatatgtaaaactgtgaagaattttcggaaagttttttatatatacattgtttg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39123560 |
ttaaggcgtgtaactctgtgttcacttcacatattaatgtgataattatatgtaaaactgtgaagaatttttggaaagttttttatatatacattgtttg |
39123659 |
T |
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| Q |
312 |
gagtctgctgcatgtttaacatt |
334 |
Q |
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||||||||||||||||||||||| |
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| T |
39123660 |
gagtctgctgcatgtttaacatt |
39123682 |
T |
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