View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_high_20 (Length: 265)
Name: NF20050_high_20
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 45627969 - 45628207
Alignment:
| Q |
15 |
agcaaaggttcaaaaggggacagaaaaattaagctcaagcacaagctggtgagtaagcctcaatgacaagaattgagaatttgagtataaatgtgaaata |
114 |
Q |
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| T |
45627969 |
agcaaaggttcaaaaggggacagaaaaattaagctcaagcacaacctggtgagtaagcctcaatgacaagaattgagaatttgagtataaatgtgaaaca |
45628068 |
T |
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| Q |
115 |
aataatgtgt--------agaaattatgcttttgttgtacattcagatacatgacaattgaaataatggagatatgtgaatgttggtattattatgctgc |
206 |
Q |
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| T |
45628069 |
aaaaatgtgtctgtactgagaaattatgcttttgttgtacattcagatacatgacaattgaaataatggagatatgtgaatgctggtattattatgctgc |
45628168 |
T |
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| Q |
207 |
atacatagttcataaatatttcaaggggctatcaggggt |
245 |
Q |
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| T |
45628169 |
atacatagttcataaatatttcaaggggctatcaggggt |
45628207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 30784124 - 30784359
Alignment:
| Q |
17 |
caaaggttcaaaaggggacagaaaaattaagctcaagcacaagctggtgagtaagcctcaatgacaagaattgagaatttgagtataaatgtgaaataaa |
116 |
Q |
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| T |
30784124 |
caaaggttcaaaaggggacagaaaaattaagctcaagcacaacctggtgagtatgcctcaatgacaagaattgagaatttgagtataaatgtgaaataaa |
30784223 |
T |
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| Q |
117 |
taatgtgt--------agaaattatgcttttgttgtacattcagatacatgacaattgaaataatggagatatgtgaatgttggtattattatgctgcat |
208 |
Q |
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| T |
30784224 |
taatgtgtctgtactcagaaattctgcttttgttgtagattcagatacatgacaattgaaataatgcagatatgtgaatgctgatattattatgctgcat |
30784323 |
T |
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| Q |
209 |
acatagttcataaatatttcaaggggctatcagggg |
244 |
Q |
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| T |
30784324 |
acatagttcataaatatttcaaggggctatcagggg |
30784359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 36321882 - 36322106
Alignment:
| Q |
16 |
gcaaaggttcaaaaggggacagaaaaattaagctcaagcacaagctggtgagtaagcctcaatgacaagaattgagaatttgagtataaatgtgaaataa |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36321882 |
gcaaaggttcaaaaggggacagaaaaatcaagctcaagcacaacctggtgaataagcatcaatgacaagaattgagaatttgagtataaatgtgaaataa |
36321981 |
T |
|
| Q |
116 |
ataatgtgt--------agaaattatgcttttgttgtacattcagatacatgacaattgaaataatggagatatgtgaatgttggtattattatgctgca |
207 |
Q |
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| T |
36321982 |
ataatgtgtctgtactcagaaattctgcttttgttgtacatttagatacatgacaattaaaataatgcattcatgtgaatgccgatattattatgctgca |
36322081 |
T |
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| Q |
208 |
tacatagttcataaatatttcaagg |
232 |
Q |
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| T |
36322082 |
tacatagttcataaatatttcaagg |
36322106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 36306529 - 36306717
Alignment:
| Q |
51 |
aagcacaagctggtgagtaagcctcaatgacaagaattgagaatttgagtataaatgtgaaataaataatgtgt--------agaaattatgcttttgtt |
142 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||| |
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| T |
36306529 |
aagcacaacctggtgaataagcctcaatgacaagaattgagaatttgagtataaatgtgaagtaaataaagtgtttgtactcagaaattttgcttttgtt |
36306628 |
T |
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| Q |
143 |
gtacattcagatacat-gacaattgaaataatggagatatgtgaatgttggtattattatgctgcatacatagttcataaatatttcaa |
230 |
Q |
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||||||| ||||| || |||| |||||| ||| ||| |||||||| || ||||||| | ||||||||||| | ||||||||||||| |
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| T |
36306629 |
gtacatttagatatatggacagttgaaaaaatacagacatgtgaattctgctattattctattgcatacatagctaataaatatttcaa |
36306717 |
T |
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