View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_high_24 (Length: 248)
Name: NF20050_high_24
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_high_24 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 36 - 248
Target Start/End: Original strand, 11018213 - 11018425
Alignment:
| Q |
36 |
acaaccacctttggttgtgaatcttttccatctattactttccatcacattcctcctatttcattcccagttacactcccacctcatatagtcccacttg |
135 |
Q |
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| T |
11018213 |
acaaccacctttggttgtgaatcttttccatctattactttccatcacattcctcctatttcattcccagttacactcccacctcatatagtcccacttg |
11018312 |
T |
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| Q |
136 |
aagtttgtggtcgtagtaaccaccatgttaaccatgttcttcaatccatttcaaaaacctcaaaccttaaaggtgttattttggatttcatgaactatag |
235 |
Q |
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| T |
11018313 |
aagtttgtggtcgtagtaaccaccatgttaaccatgttcttcaatccatttcaaaaacctcaaaccttaaaggtgttattttggatttcatgaactatag |
11018412 |
T |
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| Q |
236 |
cacaaaccaaatc |
248 |
Q |
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| T |
11018413 |
cacaaaccaaatc |
11018425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 11079086 - 11079175
Alignment:
| Q |
146 |
tcgtagtaaccaccatgttaaccatgttcttcaatccatttcaaaaacctcaaaccttaaaggtgttattttggatttcatgaactatag |
235 |
Q |
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| T |
11079086 |
tcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatag |
11079175 |
T |
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