View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_high_26 (Length: 237)
Name: NF20050_high_26
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 44884595 - 44884793
Alignment:
| Q |
23 |
gtcattatatgtttaatgtatgcaattttgaatgcaacttaaaaaatccaagatgattagatacagttccacagttttttcaatttactgccaaatagaa |
122 |
Q |
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| T |
44884595 |
gtcattatatgtttaatgtatgcaattttgaatgcaacttaaaaaatccaagatgattagatacagttccacagttttttcaatttactgccaaatagaa |
44884694 |
T |
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| Q |
123 |
agtgtaaatttaaaccatgtattcttttttaacaaaaatttaacttgaattgttttgctacttctgttgttttatcatagctgaaaggcagatatggag |
221 |
Q |
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| T |
44884695 |
agtgtaaatttaaaccatgtattcttttttaacaaaaatttaacttgaattgttttgctacttctgttgttttatcatagctgaaaggcagatatggag |
44884793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 44866845 - 44866985
Alignment:
| Q |
25 |
cattatatgtttaatgtatgcaattttgaatgcaacttaaaaaatccaagatgattagatacagttccacagttttttcaatttactgccaaatagaaag |
124 |
Q |
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| T |
44866845 |
cattatctgtttaatgtatgcaattttgaatgcaact-aaaaaatccaagctgatcagatacacttccactgttttttcaatttactgtcaaatagaaag |
44866943 |
T |
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| Q |
125 |
tgtaaatttaaaccatgtattctttt-ttaacaaaaatttaa |
165 |
Q |
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| T |
44866944 |
tgcaaatttaaaccatgtatttttttcttaacataaatttaa |
44866985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 44841065 - 44841120
Alignment:
| Q |
24 |
tcattatatgtttaatgtatgcaattttgaatgcaacttaaaaaatccaagatgat |
79 |
Q |
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| T |
44841065 |
tcattatatggttaatgtatgcaagtttgaatgcaactttaaaaatccaagctgat |
44841120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 44852568 - 44852614
Alignment:
| Q |
175 |
ttttgctacttctgttgttttatcatagctgaaaggcagatatggag |
221 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44852568 |
tttttctacttctgttgttttgtcatagctgaaaggcagatatggag |
44852614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 44867016 - 44867057
Alignment:
| Q |
180 |
ctacttctgttgttttatcatagctgaaaggcagatatggag |
221 |
Q |
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| T |
44867016 |
ctacttctgttgttttgtcatagctgaaaggaagatatggag |
44867057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 44841242 - 44841276
Alignment:
| Q |
187 |
tgttgttttatcatagctgaaaggcagatatggag |
221 |
Q |
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| T |
44841242 |
tgttgttttgtcatagctgaaaggcagatatggag |
44841276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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