View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_high_29 (Length: 228)
Name: NF20050_high_29
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_high_29 |
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| [»] scaffold1149 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 16235910 - 16235816
Alignment:
| Q |
18 |
atcctaacatagtacacttcggtttaagatgagacaagcatccaattgactgacaatcagaatcttgggtacaattaataacatccgctataatg |
112 |
Q |
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| T |
16235910 |
atcctaacatagtacacttcggtttaagatgagacaagcatccaattgactgacaatcagaatcttgggtacaattaataacatccgctataatg |
16235816 |
T |
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Target: scaffold1149 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold1149
Description:
Target: scaffold1149; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 848 - 942
Alignment:
| Q |
18 |
atcctaacatagtacacttcggtttaagatgagacaagcatccaattgactgacaatcagaatcttgggtacaattaataacatccgctataatg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
848 |
atcctaacatagtacacttcggtttaagatgagacaagcatccaattgaatgacaatcagaatcttgggtacaattaataacatccgctataatg |
942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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