View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20050_high_3 (Length: 687)
Name: NF20050_high_3
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 637; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 13 - 669
Target Start/End: Complemental strand, 34137607 - 34136951
Alignment:
| Q |
13 |
acatcatcatgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137607 |
acatcatcatgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacct |
34137508 |
T |
|
| Q |
113 |
ctctccaatattccacaatgaagttccaaatccatctgatattgaaaacttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137507 |
ctctccaatattccacaatgaagttccaaatccatctgatattgaaaacttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtc |
34137408 |
T |
|
| Q |
213 |
acaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgctcagagtttggaggagaagaggaagattgctagag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34137407 |
acaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgctcagagtttggaggagaagaggaaggttgctagag |
34137308 |
T |
|
| Q |
313 |
atgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaagaagtgcttgattttctcgccaacgatcccactttggt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137307 |
atgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaagaagtgcttgattttctcgccaacgatcccactttggt |
34137208 |
T |
|
| Q |
413 |
tcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatccatccccacaatacccttcacacttcaggtagttatatatttcatcttca |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137207 |
tcctctgaattctgatgaaaacgatgatcaatttattcaatggtctaatccatccccacaattcccttcacacttcaggtagttatatatttcatcttca |
34137108 |
T |
|
| Q |
513 |
atggccatttcgattattcaaaagtatatttttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaagttggctt |
612 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137107 |
atcgccatttagattattcaaaagtatatttttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaagttggctt |
34137008 |
T |
|
| Q |
613 |
acaagttgcttgagctaatagctttgagcttaggagttgaagcaaagaggtttgaag |
669 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137007 |
acaagttgcttgagctaatagctttgagcttaggagttgaagcaaagaggtttgaag |
34136951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 496
Target Start/End: Complemental strand, 34133689 - 34133213
Alignment:
| Q |
20 |
catgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctcca |
119 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34133689 |
catgggagaagtggaccctgcttttgttcaagagcaagaacacagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctcca |
34133590 |
T |
|
| Q |
120 |
atattccacaatgaagttccaaatccatctgatattgaaaacttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaacc |
219 |
Q |
| |
|
|| | ||| ||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
34133589 |
attcttcaccatgcagttccaaatccatctgatattgaaaacttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaacc |
34133490 |
T |
|
| Q |
220 |
atggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgctcagagtttggaggagaagaggaagattgctagagatgaaat |
319 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| | |
|
|
| T |
34133489 |
atggagtccctttgagtctaaggcagagacttgaggaagcttctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgaggt |
34133390 |
T |
|
| Q |
320 |
caatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaagaagtgcttgattttctcgccaacgatcccactttggttcctctg |
419 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||| | | ||||| || || ||||||| | |
|
|
| T |
34133389 |
caatcctactggttattatgatacagagcataccaaaaatgttagagactggaaagaagtgtttgattttctttctcaagatcctacattagttcctcgg |
34133290 |
T |
|
| Q |
420 |
aattctgatgaaaacgatgatcaagttattcaatggtctaatccatccccacaatacccttcacacttcaggtagtt |
496 |
Q |
| |
|
| |||||||||| | |||||| |||||||||||| |||||| ||| || ||||| ||| |||| ||||||||||| |
|
|
| T |
34133289 |
agttctgatgaacatgatgatggtgttattcaatggactaatcaatcacctcaatatcctccacaattcaggtagtt |
34133213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 496
Target Start/End: Complemental strand, 34141269 - 34140790
Alignment:
| Q |
14 |
catcatcatgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctc |
113 |
Q |
| |
|
||||| ||||||||| ||||||||| |||| |||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||| | |||||| ||| |
|
|
| T |
34141269 |
catcaccatgggagaggtagacccaactttcgttcaagagctagaacacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctc |
34141170 |
T |
|
| Q |
114 |
tctccaatattccacaatgaagttccaaatccatctgatattgaaaacttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
34141169 |
tctccaatattccacaatgaagttccaaatccatctgctattgaaagcttagtcaaggagattggaagtgcatgcaaagcgtggggattctttaaagtca |
34141070 |
T |
|
| Q |
214 |
caaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgctcagagtttggaggagaagaggaagattgctagaga |
313 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
34141069 |
caaaccatggagtccctttgagtctcaggcagaggcttgatgaagctgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagaga |
34140970 |
T |
|
| Q |
314 |
tgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaagaagtgcttgattttctcgccaacgatcccactttggtt |
413 |
Q |
| |
|
||| |||| |||||||||||||||||| || |||| |||||| |||||||| ||| |||||||||| |||||||| | |||| || | |||| || |
|
|
| T |
34140969 |
tgagatcattccaactggttattatgacactgaactcaccaagaatgttagagacatgaaagaagtgtttgatttttacaccaatga---ccctttcttt |
34140873 |
T |
|
| Q |
414 |
cctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatccatccccacaatacccttcacacttcaggtagtt |
496 |
Q |
| |
|
||||| | | || ||||||| ||||||| |||||||||||||| ||||||| | || | |||||||||| ||||||||||||| |
|
|
| T |
34140872 |
cctctcactcctcatgaaaatgatgatcgagttattcaatggtgtaatccaacacctccatacccttcaaacttcaggtagtt |
34140790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 20 - 469
Target Start/End: Complemental strand, 34127416 - 34126967
Alignment:
| Q |
20 |
catgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctcca |
119 |
Q |
| |
|
|||||||||| | ||| ||| |||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||||||||| ||| |
|
|
| T |
34127416 |
catgggagaattggacttagcatttgttcaagagcaagaacacagaccaaaactatccatcattgaagccgaaggaattcccgaaattgacctctcacca |
34127317 |
T |
|
| Q |
120 |
atattccacaatgaagttccaaatccatctgatattgaaaacttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaacc |
219 |
Q |
| |
|
||||||||| ||||||||| | ||| ||||| |||||| | ||| |||||| | ||||||||||||||||| || ||||| ||||| ||||| ||||||| |
|
|
| T |
34127316 |
atattccaccatgaagttcaagatcaatctgctattgatagcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaacc |
34127217 |
T |
|
| Q |
220 |
atggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgctcagagtttggaggagaagaggaagattgctagagatgaaat |
319 |
Q |
| |
|
||| ||||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| | |||| |||| |||||||| || |
|
|
| T |
34127216 |
atgaggtccctttgagtattaggcaaagacttgatgaagctgctagattgttctttgctcaaagtttggaggagaaaatgaaggttgccagagatgagat |
34127117 |
T |
|
| Q |
320 |
caatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaagaagtgcttgattttctcgccaacgatcccactttggttcctctg |
419 |
Q |
| |
|
|| |||| |||||||| ||||| ||| |||||||| ||||| || |||||| ||||||| |||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
34127116 |
cacaccaattggttattttgataaagagcacaccaagaatgtaagaaactggatagaagtgtttgattttttcgccagagatcccactttggttcctctg |
34127017 |
T |
|
| Q |
420 |
aattctgatgaaaacgatgatcaagttattcaatggtctaatccatcccc |
469 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34127016 |
aattgtgatgaaaatgatgatcaagttattcaatggtctaatccgtcccc |
34126967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 179 - 489
Target Start/End: Complemental strand, 34143587 - 34143277
Alignment:
| Q |
179 |
aagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgct |
278 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||| ||||| ||||| |||||| | | ||| |||| | | | || |||||| |||| ||||||| || |
|
|
| T |
34143587 |
aagtgcttgcaaggaatggggtttcttccaagttacaaatcatggtgtccctcccactctaaggctcaaaatggaagaagcttctaagatgttcttcgca |
34143488 |
T |
|
| Q |
279 |
cagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaagaag |
378 |
Q |
| |
|
||||| ||||||| |||| ||||||| | | |||||| | | | |||||||| |||||||||| |||||||| ||||| || ||||||||||||| |
|
|
| T |
34143487 |
cagagcctggaggataagaagaagattaccacagatgataccggtttgcctggttatcatgatacagagcacaccaagaatgtaagagactggaaagaag |
34143388 |
T |
|
| Q |
379 |
tgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatccatccccacaataccc |
478 |
Q |
| |
|
|| ||||||||||| | || || || ||||||||||||||||||||||||||| ||||||||||||| | | | ||| ||||||||||||| |||||||| |
|
|
| T |
34143387 |
tgtttgattttctctctaatgaccctactttggttcctctgaattctgatgaacacgatgatcaagtcacttactggactaatccatcccctcaataccc |
34143288 |
T |
|
| Q |
479 |
ttcacacttca |
489 |
Q |
| |
|
| ||||||||| |
|
|
| T |
34143287 |
tccacacttca |
34143277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 543 - 669
Target Start/End: Complemental strand, 34131386 - 34131260
Alignment:
| Q |
543 |
tttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgagct |
642 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| |||||||||||| | ||||| |||||||| |||| || | |||||| |||||||||||| | |||| |
|
|
| T |
34131386 |
tttaaaattgatgtctacatgagcagggctatacttgaagagtatattcaagaggtggaaaagctggcatataggttgctggagctaatagctctaagct |
34131287 |
T |
|
| Q |
643 |
taggagttgaagcaaagaggtttgaag |
669 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
34131286 |
taggacttgaagcaaagaggtttgaag |
34131260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 543 - 669
Target Start/End: Complemental strand, 34126244 - 34126118
Alignment:
| Q |
543 |
tttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgagct |
642 |
Q |
| |
|
||||||||| |||| ||||| |||||| |||| |||||||||||| | | ||||||||||| ||||| | |||||||| ||| ||||||||||||||| |
|
|
| T |
34126244 |
tttaaaattaatgtcaacatgagcaggaatataattgaagagtatattaaggagatggaaaatttggcctctaagttgctggagttaatagctttgagct |
34126145 |
T |
|
| Q |
643 |
taggagttgaagcaaagaggtttgaag |
669 |
Q |
| |
|
|||| ||||||||| ||||||||||| |
|
|
| T |
34126144 |
tagggcttgaagcaatgaggtttgaag |
34126118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 541 - 669
Target Start/End: Complemental strand, 34140237 - 34140109
Alignment:
| Q |
541 |
tttttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgag |
640 |
Q |
| |
|
||||||||||| |||| ||||| || || | |||| |||||||||||| ||||||||||||||| |||| ||||| | ||||| |||||||| || |
|
|
| T |
34140237 |
tttttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagcttatagctttaag |
34140138 |
T |
|
| Q |
641 |
cttaggagttgaagcaaagaggtttgaag |
669 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
34140137 |
cttaggacttgaagcaaagaggtttgaag |
34140109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 580 - 669
Target Start/End: Complemental strand, 34142847 - 34142758
Alignment:
| Q |
580 |
aagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgagcttaggagttgaagcaaagaggtttgaag |
669 |
Q |
| |
|
||||||||| | |||||||||||||| | || | | |||||| ||||| |||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
34142847 |
aagagtatattaaagagatggaaaagctagcctttacgttgctagagctcatagctcttagcttaggagttgaagcaaagaggtttgaag |
34142758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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