View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20050_high_6 (Length: 506)

Name: NF20050_high_6
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20050_high_6
NF20050_high_6
[»] chr7 (18 HSPs)
chr7 (348-488)||(25691806-25691946)
chr7 (15-108)||(13418663-13418756)
chr7 (13-108)||(8978868-8978964)
chr7 (19-108)||(7397283-7397372)
chr7 (42-108)||(3329549-3329615)
chr7 (27-108)||(20582397-20582478)
chr7 (28-108)||(1848105-1848185)
chr7 (13-109)||(5108705-5108801)
chr7 (55-108)||(19153437-19153489)
chr7 (55-108)||(20752836-20752888)
chr7 (22-108)||(16058904-16058991)
chr7 (27-108)||(6042592-6042673)
chr7 (27-107)||(2563960-2564041)
chr7 (13-105)||(4785985-4786077)
chr7 (27-107)||(17829712-17829791)
chr7 (68-108)||(8877562-8877602)
chr7 (42-106)||(17153046-17153109)
chr7 (13-100)||(39273038-39273126)
[»] chr4 (13 HSPs)
chr4 (13-108)||(7582438-7582534)
chr4 (13-104)||(24639324-24639415)
chr4 (22-108)||(19562046-19562133)
chr4 (27-108)||(13908995-13909077)
chr4 (13-108)||(19492574-19492670)
chr4 (14-65)||(11935241-11935293)
chr4 (68-108)||(16730318-16730358)
chr4 (13-108)||(17336997-17337093)
chr4 (27-105)||(17026220-17026299)
chr4 (27-108)||(13692557-13692639)
chr4 (55-108)||(15164907-15164959)
chr4 (13-109)||(40227916-40228011)
chr4 (68-108)||(17216961-17217001)
[»] chr2 (15 HSPs)
chr2 (13-108)||(27908981-27909076)
chr2 (42-108)||(17675521-17675586)
chr2 (13-108)||(15339379-15339475)
chr2 (13-108)||(17349489-17349585)
chr2 (27-108)||(28925663-28925744)
chr2 (27-108)||(30411808-30411890)
chr2 (47-108)||(17635672-17635732)
chr2 (16-108)||(29719097-29719190)
chr2 (13-108)||(26603223-26603317)
chr2 (22-108)||(29143091-29143177)
chr2 (27-108)||(25618697-25618778)
chr2 (22-79)||(26667464-26667522)
chr2 (31-107)||(25196153-25196229)
chr2 (55-108)||(25920394-25920447)
chr2 (13-108)||(25887766-25887861)
[»] chr3 (16 HSPs)
chr3 (7-108)||(17438287-17438388)
chr3 (27-107)||(21302061-21302142)
chr3 (22-108)||(8770149-8770235)
chr3 (22-108)||(8882994-8883081)
chr3 (27-108)||(4650367-4650448)
chr3 (22-107)||(8170013-8170099)
chr3 (27-108)||(12754799-12754881)
chr3 (28-108)||(16229831-16229912)
chr3 (22-104)||(19925493-19925576)
chr3 (27-108)||(8765247-8765328)
chr3 (32-109)||(27413778-27413856)
chr3 (29-109)||(932883-932963)
chr3 (27-107)||(19908449-19908530)
chr3 (13-108)||(2167481-2167574)
chr3 (69-97)||(12411301-12411329)
chr3 (13-108)||(16245593-16245687)
[»] scaffold0054 (1 HSPs)
scaffold0054 (13-108)||(72151-72247)
[»] chr6 (11 HSPs)
chr6 (13-108)||(25781919-25782014)
chr6 (28-108)||(24475197-24475277)
chr6 (27-108)||(27737565-27737646)
chr6 (20-107)||(24657338-24657425)
chr6 (27-108)||(23844341-23844422)
chr6 (55-108)||(22813626-22813678)
chr6 (13-108)||(14079320-14079416)
chr6 (56-108)||(20005824-20005876)
chr6 (13-108)||(20144984-20145080)
chr6 (13-108)||(22187759-22187855)
chr6 (56-108)||(22410234-22410286)
[»] scaffold0001 (1 HSPs)
scaffold0001 (7-108)||(69221-69323)
[»] chr1 (14 HSPs)
chr1 (13-105)||(12208746-12208838)
chr1 (27-107)||(21666485-21666565)
chr1 (27-108)||(21449218-21449300)
chr1 (13-108)||(9401647-9401742)
chr1 (13-107)||(17610118-17610213)
chr1 (27-108)||(15543843-15543925)
chr1 (27-108)||(21973081-21973163)
chr1 (13-108)||(17359302-17359398)
chr1 (68-108)||(29242648-29242688)
chr1 (22-108)||(16916817-16916904)
chr1 (42-108)||(16179147-16179213)
chr1 (20-108)||(14781735-14781824)
chr1 (56-108)||(25405536-25405588)
chr1 (13-108)||(31235911-31236007)
[»] chr5 (7 HSPs)
chr5 (27-108)||(20744546-20744627)
chr5 (27-106)||(24245420-24245499)
chr5 (29-107)||(17432025-17432103)
chr5 (22-108)||(28664903-28664989)
chr5 (20-108)||(16523672-16523761)
chr5 (55-108)||(20563997-20564050)
chr5 (68-108)||(20315347-20315387)
[»] scaffold0638 (1 HSPs)
scaffold0638 (13-108)||(684-780)
[»] chr8 (10 HSPs)
chr8 (33-108)||(29382243-29382319)
chr8 (13-108)||(27659576-27659670)
chr8 (42-108)||(17101797-17101863)
chr8 (13-108)||(24114146-24114241)
chr8 (13-108)||(24269738-24269833)
chr8 (27-108)||(13314868-13314950)
chr8 (27-108)||(23893090-23893171)
chr8 (42-108)||(25182320-25182385)
chr8 (13-104)||(24110532-24110623)
chr8 (13-96)||(26394562-26394644)
[»] scaffold0671 (1 HSPs)
scaffold0671 (22-108)||(572-658)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 348 - 488
Target Start/End: Complemental strand, 25691946 - 25691806
Alignment:
Q  348 gcctatagaataatcatctaatcattattctcttctaactattttccagctatctagtatccatgttctagtatatggttgtgcctacatggctacatcc 447  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25691946 gcctatagaataatcatcgaatcattattctcttctaactattttctagctatctagtatccatgttctagtatatggttgtgcctacatggctgcatcc 25691847  T
Q  448 ttgcattgtctacttagatatgcgtgatttgatggtctcgt 488  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25691846 ttgcattgtctacttagatatgcgtgatttgatggtctcgt 25691806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 13418756 - 13418663
Alignment:
Q  15 tataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||||||||||||| |||||||| |||| ||| ||| ||| |||||| | |||||||||||||||| | ||||||||||||||||||||||    
T  13418756 tatatatagagtggattcaaagaatcctaaccgctgcttactttgctgcaa-tcaaaacaggtaaacttgctctgttgcaaacagataaaaattg 13418663  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 8978868 - 8978964
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||| |||| |||||  |||||||| |||  ||| |||||||||||||||  |||||||||||||||||| | |||||||||||| |||||||    
T  8978868 aatataaacagaggggatttaaagaatcctaactgctgcttatttttctgcaaccaaaaacaggtaaacttgttctattgcaaacagatgaaaattg 8978964  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 7397372 - 7397283
Alignment:
Q  19 aatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||| | ||||||||||||| |||| ||| ||| |||||||||||  ||||||| ||| |||||| ||||||||||||||||||||||    
T  7397372 aatagagggaattcgaagaatcctaaccgctgcttacttttctgcaaccaaaaacagataa-cttgttttgttgcaaacagataaaaattg 7397283  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 3329549 - 3329615
Alignment:
Q  42 aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||| ||| |||||||||||  |||||| ||||||||| | ||||||||||||||||||||||    
T  3329549 aaccgctgcttacttttctgcaaccaaaaacaagtaaacttgctatgttgcaaacagataaaaattg 3329615  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 20582478 - 20582397
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||| |||  ||| ||| |||||||||||  |||||||||||||||| | ||||||||| ||||||||||||    
T  20582478 ggattcgaagaatcctaactgctgcttacttttctgcaacc-aaaacaggtaaacttgctctgttgcaaatagataaaaattg 20582397  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 1848105 - 1848185
Alignment:
Q  28 gattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||||  |||| ||| ||| |||||||||||  |||||||||||||||| | |||| |||||||||||||||||    
T  1848105 gattcgaagaatcataaccgctgcttacttttctgcaacc-aaaacaggtaaacttgctctgtttcaaacagataaaaattg 1848185  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 5108801 - 5108705
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattgt 109  Q
    ||||||||||| | |||||| |||||||| |||| ||| ||| |||||||||||  ||| || ||||||||| | | |||||||||||||||||||||    
T  5108801 aatataaataggg-ggattcaaagaatcctaaccgctgcttacttttctgcaaccaaaatcaagtaaacttgctctcttgcaaacagataaaaattgt 5108705  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 19153489 - 19153437
Alignment:
Q  55 ttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||  ||||||||||| |||||| ||||||||||||||||||||||    
T  19153489 ttttctgcaaccaaaaacaggtaa-cttgttatgttgcaaacagataaaaattg 19153437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 20752888 - 20752836
Alignment:
Q  55 ttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||  ||||||||||| |||||| ||||||||||||||||||||||    
T  20752888 ttttctgcaaccaaaaacaggtaa-cttgttatgttgcaaacagataaaaattg 20752836  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 16058904 - 16058991
Alignment:
Q  22 agagtggattcgaagaatccaacca-ctgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||||||||||||||| | || ||| ||| ||| |||||||  |||||| ||||| ||| | ||||||||||||||||||||||    
T  16058904 agaggggattcgaagaatcctaacagctgcttactttactgcaaccaaaaacaagtaaatttgctctgttgcaaacagataaaaattg 16058991  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 6042673 - 6042592
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||| |||||||| |||| ||| |||||||||||||||  |||| ||||||||||  | ||||||||||| ||||||||||    
T  6042673 ggattcaaagaatcctaaccgctgcttatttttctgcaaccaaaaaaaggtaaactt-ctctgttgcaaacatataaaaattg 6042592  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 2564041 - 2563960
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaatt 107  Q
    |||||||||| |||| |||| ||  ||| ||||||||||   ||| |||||||||||| | |||||||||||||||||||||    
T  2564041 ggattcgaaggatcctaaccgctacttacttttctgcaaactaaagcaggtaaacttgctctgttgcaaacagataaaaatt 2563960  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 4786077 - 4785985
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaa 105  Q
    |||||||||||   ||||||||||||||| |||| ||| ||| |||||||||||  ||||||||| |||||| | | ||||||| |||||||||    
T  4786077 aatataaataggagggattcgaagaatcctaaccgctgcttacttttctgcaaccaaaaacaggt-aacttgctctattgcaaatagataaaaa 4785985  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 17829791 - 17829712
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaatt 107  Q
    ||||||||||||||  |||||||| ||| |||||| ||||  ||||||| ||| |||||| |||||||||||||||||||||    
T  17829791 ggattcgaagaatcttaaccactgcttaattttctccaacc-aaaacagttaa-cttgttctgttgcaaacagataaaaatt 17829712  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 8877602 - 8877562
Alignment:
Q  68 aaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||||||||||| | ||||||||||||||||||||||    
T  8877602 aaaataggtaaacttgctctgttgcaaacagataaaaattg 8877562  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 17153046 - 17153109
Alignment:
Q  42 aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaat 106  Q
    |||| ||| ||| |||||||||||  ||||||||||| |||| | ||||||||||||||||||||    
T  17153046 aaccgctgcttacttttctgcaaccaaaaacaggtaa-cttgctttgttgcaaacagataaaaat 17153109  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 39273038 - 39273126
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagat 100  Q
    |||||||| ||||  ||||||||| |||| |||| ||| ||| |||||||||||  |||| ||||||||||| | ||||||||| ||||    
T  39273038 aatataaacagaggagattcgaaggatcctaaccgctgcttacttttctgcaaccaaaaataggtaaacttgctctgttgcaaatagat 39273126  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 7582534 - 7582438
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||| |||| |||||| |||||||| |||||||| |||||||||||||||  |||||||||||||||||| | |||||||||||| |||||||    
T  7582534 aatataaacagaggggattcaaagaatcctaaccactgcttatttttctgcaaccaaaaacaggtaaacttgttctattgcaaacagatgaaaattg 7582438  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 24639324 - 24639415
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaa 104  Q
    ||||||||||||| |||||| |||||||| |||||||| ||| ||||||||||| ||||||||||||||||| | ||||||||||| ||||||    
T  24639324 aatataaatagag-ggattcaaagaatcctaaccactgcttacttttctgcaaccgaaaacaggtaaacttgctctgttgcaaacaaataaaa 24639415  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 19562046 - 19562133
Alignment:
Q  22 agagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||||||||||||| | |||| ||| ||| |||||||||||  |||||||||||||||| | ||||||||| ||||||||||||    
T  19562046 agaggggattcgaagaattctaaccgctgattacttttctgcaaccaaaaacaggtaaacttgctctgttgcaaagagataaaaattg 19562133  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 13909077 - 13908995
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||| |||||||| |||| ||| ||| |||| ||||||  |||||||||||||||| | ||||||||||||||||||||||    
T  13909077 ggattcaaagaatcctaaccgctgcttacttttttgcaaccaaaaacaggtaaacttgctctgttgcaaacagataaaaattg 13908995  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 19492574 - 19492670
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||| || | ||||||||||||||| |||| | | ||| |||||||||||  |||||| ||||||||| ||||||||||||| ||||| ||||    
T  19492574 aatataaacaggggggattcgaagaatcctaaccgccgcttacttttctgcaaccaaaaacatgtaaacttgctgtgttgcaaacaaataaatattg 19492670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 11935293 - 11935241
Alignment:
Q  14 atataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaac 65  Q
    |||||||||||| ||||||||||||||| |||||||| ||| |||||||||||    
T  11935293 atataaatagaggggattcgaagaatcctaaccactgattacttttctgcaac 11935241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 16730318 - 16730358
Alignment:
Q  68 aaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  16730318 aaaacaggtaaacttgctctgttgcaaacagataaaaattg 16730358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 17336997 - 17337093
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||  | ||||||||||||||  || | ||| ||| |||| ||||||  |||||||||||||||| | ||||| ||||||||||||||||    
T  17336997 aatataaataagggggattcgaagaatcataatctctgcttacttttatgcaaccaaaaacaggtaaacttgctctgttgtaaacagataaaaattg 17337093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 17026220 - 17026299
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaa 105  Q
    ||||||||||||||| |||| ||| ||| || ||||||||  |||||||||||| ||  | |||||||||||||||||||    
T  17026220 ggattcgaagaatcctaaccgctgcttacttgtctgcaaccaaaaacaggtaaatttactctgttgcaaacagataaaaa 17026299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 13692557 - 13692639
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||| ||| |||| ||| |||||||||||  |||||||||||||||| | | || |||||  ||||||||||    
T  13692557 ggattcgaagaatcctaactactgcttacttttctgcaaccaaaaacaggtaaacttgctcttttacaaactaataaaaattg 13692639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 15164959 - 15164907
Alignment:
Q  55 ttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||  |||||||||||||||| | ||||||||||| ||||||||||    
T  15164959 ttttctgcaacc-aaaacaggtaaacttgctctgttgcaaacaaataaaaattg 15164907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 40228011 - 40227916
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattgt 109  Q
    ||||||||||| | |||||| |||||||| |||| ||| ||||||||| |||||  |||| ||||||||||  |  ||||||||||||||||||||||    
T  40228011 aatataaataggg-ggattc-aagaatcctaaccgctgcttatttttcggcaacaaaaaataggtaaacttactccgttgcaaacagataaaaattgt 40227916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 17217001 - 17216961
Alignment:
Q  68 aaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  17217001 aaaacatgtaaacttgctctgttgcaaacagataaaaattg 17216961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 27908981 - 27909076
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||| | ||||||||||||||| |||| ||| ||| |||||||||||  |||||||||||||||| | ||||||||||||||||||||||    
T  27908981 aatataaataggggggattcgaagaatcctaaccgctgcttaattttctgcaacc-aaaacaggtaaacttgctctgttgcaaacagataaaaattg 27909076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 17675521 - 17675586
Alignment:
Q  42 aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| |||||||||||||||||||  |||||||||||||||| | ||||||||||||||||||||||    
T  17675521 aaccgctgtttatttttctgcaacc-aaaacaggtaaacttgctctgttgcaaacagataaaaattg 17675586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 15339475 - 15339379
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||| ||||| ||||||||| |||  ||| ||| |||||||||||  ||||||| |||||||| | ||||||||||| ||||||||||    
T  15339475 aatataaatagaggggatttgaagaatcctaactgctgcttacttttctgcaacaaaaaacagataaacttgctctgttgcaaacaaataaaaattg 15339379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 17349585 - 17349489
Alignment:
Q  13 aatataaatagagtggattcgaagaatcca-accactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||| ||||||||||||| |  ||| ||| ||| |||| ||||||  |||||| ||||||||| | ||||||||||||||||||||||    
T  17349585 aatataaatagaggggattcgaagaattctgaccgctgcttacttttttgcaaccaaaaacaagtaaacttgctctgttgcaaacagataaaaattg 17349489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 28925744 - 28925663
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||| |||| ||| ||| |||||||||||  |||||||||||||||| | ||||||||||| ||||||||||    
T  28925744 ggattcgaagaatcctaacctctgcttacttttctgcaacc-aaaacaggtaaacttgctatgttgcaaacaaataaaaattg 28925663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 30411890 - 30411808
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||| ||||| |||| ||| ||| |||||||||||  |||||| ||||||||| | ||||||||||||||||||||||    
T  30411890 ggattcgaaaaatcctaaccgctgcttacttttctgcaaccaaaaacatgtaaacttgctctgttgcaaacagataaaaattg 30411808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 17635672 - 17635732
Alignment:
Q  47 ctgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||| ||||||||  |||||||||||||||| | ||||||||||||||||||||||    
T  17635672 ctgtttatttatctgcaacc-aaaacaggtaaacttgctctgttgcaaacagataaaaattg 17635732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 29719097 - 29719190
Alignment:
Q  16 ataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||| ||||||||||||||| |||  ||| ||| |||||||||||  || ||||||||||||| | ||||||| ||| ||||||||||    
T  29719097 ataaatagaggggattcgaagaatcctaactgctgcttacttttctgcaaccaaacacaggtaaacttgctctgttgcatacatataaaaattg 29719190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 26603223 - 26603317
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||| | ||||||||||||||| |||| ||| ||| |||||| ||||  |||||||||||||| | | ||||||||||||||||||||||    
T  26603223 aatataaataggg-ggattcgaagaatcctaaccgctgcttacttttctacaaccaaaaacaggtaaact-gctctgttgcaaacagataaaaattg 26603317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 29143177 - 29143091
Alignment:
Q  22 agagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||||||||||||||  |||| ||||||| |||||| ||||  |||| ||||||||||| | ||||||||||||||||||||||    
T  29143177 agaggggattcgaagaatcttaaccgctgtttacttttctacaacc-aaaataggtaaacttgctctgttgcaaacagataaaaattg 29143091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 25618778 - 25618697
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||| | |||| ||| ||| |||||||||||  |||||||||||||||  | ||||||||||||||||||||||    
T  25618778 ggattcgaagaattcgaaccgctgcttacttttctgcaacc-aaaacaggtaaactttctctgttgcaaacagataaaaattg 25618697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 26667522 - 26667464
Alignment:
Q  22 agagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaa 79  Q
    |||| ||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||    
T  26667522 agaggggattcgaagaatcctaaccgctgtttacttttctgcaaccgaaaacaggtaaa 26667464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 25196229 - 25196153
Alignment:
Q  31 tcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaatt 107  Q
    ||||||||||| |||||||| ||| |||| ||||||  |||||||||||||||| | ||||||||||| |||||||||    
T  25196229 tcgaagaatcctaaccactgcttacttttttgcaacc-aaaacaggtaaacttgctatgttgcaaacatataaaaatt 25196153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 25920447 - 25920394
Alignment:
Q  55 ttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||  |||||||||||| | | | ||||||||||||||||||||||    
T  25920447 ttttctgcaaccaaaaacaggtaaaatcgctctgttgcaaacagataaaaattg 25920394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 25887766 - 25887861
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||| | ||||| ||||||||  || | ||| ||| |||||||||||  |||| |||||| |||| | ||||||||||||||||||||||    
T  25887766 aatataaataggggggatttgaagaatcataatcgctggttacttttctgcaaccaaaaataggtaa-cttgctctgttgcaaacagataaaaattg 25887861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 17438287 - 17438388
Alignment:
Q  7 tcgaagaatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaa 105  Q
    ||||| ||||||||||||| ||||||||||||||| ||||  || ||| |||||||||||  |||||||||||| ||| | |||||||||||||||||||    
T  17438287 tcgaacaatataaatagaggggattcgaagaatcctaaccgttgcttacttttctgcaacc-aaaacaggtaaaattgctctgttgcaaacagataaaaa 17438385  T
Q  106 ttg 108  Q
    |||    
T  17438386 ttg 17438388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 21302142 - 21302061
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaatt 107  Q
    ||||||||||||||| |||| ||||||||||||||||||   |||| ||||||||||| | |||||||||||||||||||||    
T  21302142 ggattcgaagaatcctaaccgctgtttatttttctgcaatcaaaaaaaggtaaacttgctctgttgcaaacagataaaaatt 21302061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 8770235 - 8770149
Alignment:
Q  22 agagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||||||||||||||| |||  ||| ||| |||||||||||  |||||||||||||||| | ||||||||||| ||||||||||    
T  8770235 agaggggattcgaagaatcctaactgctgcttacttttctgcaacc-aaaacaggtaaacttgctctgttgcaaacatataaaaattg 8770149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 8882994 - 8883081
Alignment:
Q  22 agagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||||||||||||||| |||  | | ||| |||||||||||| |||| ||||||||| | | ||||||||||||||||||||||    
T  8882994 agaggggattcgaagaatcctaactgcagcttaattttctgcaactaaaaataggtaaactcgctatgttgcaaacagataaaaattg 8883081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 4650448 - 4650367
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||| ||||  || ||| |||||||||||  |||||||||||||||| |  |||||||||||||||||||||    
T  4650448 ggattcgaagaatcctaaccgttgcttacttttctgcaacc-aaaacaggtaaacttgctccgttgcaaacagataaaaattg 4650367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 8170099 - 8170013
Alignment:
Q  22 agagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaatt 107  Q
    |||| ||||||||||||||| |||| |||  || |||||||||||  |||||||||||| | | | |||||||||||||||||||||    
T  8170099 agaggggattcgaagaatcctaaccgctgcatacttttctgcaaccaaaaacaggtaaattcgctatgttgcaaacagataaaaatt 8170013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 12754799 - 12754881
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||| |||| ||| ||| |||||||||||  ||| |||||||||| | | ||||||||||| ||||||||||    
T  12754799 ggattcgaagaatcctaaccgctgcttacttttctgcaaccaaaaccaggtaaactagctctgttgcaaacaaataaaaattg 12754881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 16229831 - 16229912
Alignment:
Q  28 gattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||||| |||| ||| ||| |||| ||||||  |||||||||||| | | | ||||||||||||||||||||||    
T  16229831 gattcgaagaatcctaaccgctgcttacttttttgcaaccaaaaacaggtaaattcgctctgttgcaaacagataaaaattg 16229912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 19925493 - 19925576
Alignment:
Q  22 agagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaa 104  Q
    ||||||| || ||||||||| |||| ||| ||| ||||||||||   |||||||||||||||| | ||||||||||| ||||||    
T  19925493 agagtgggttagaagaatcctaaccgctgcttacttttctgcaaaccaaaacaggtaaacttgctctgttgcaaacatataaaa 19925576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 8765328 - 8765247
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||  |||  ||| ||| |||||||||||  |||||||||||||||| | ||||||||||| ||||||||||    
T  8765328 ggattcgaagaatcttaactgctgcttacttttctgcaacc-aaaacaggtaaacttgctctgttgcaaacatataaaaattg 8765247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 27413778 - 27413856
Alignment:
Q  32 cgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattgt 109  Q
    |||||||||| |||| ||| ||| |||||||||||  |||||||||||| | | | ||||| |||||||||||||||||    
T  27413778 cgaagaatcctaaccgctgcttacttttctgcaaccaaaaacaggtaaaatcgctctgttgaaaacagataaaaattgt 27413856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 932963 - 932883
Alignment:
Q  29 attcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattgt 109  Q
    ||||||||||| | |||| ||| ||| |||||||||||  |||||| ||||||||| | ||||||||||| |||||||||||    
T  932963 attcgaagaatactaaccgctgcttacttttctgcaacc-aaaacaagtaaacttgctctgttgcaaacaaataaaaattgt 932883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 19908530 - 19908449
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaatt 107  Q
    ||||||||||||||| |||  ||| ||| |||||||||||  |||| ||||||||||| | ||||||||| | |||||||||    
T  19908530 ggattcgaagaatcctaactgctgcttacttttctgcaaccaaaaataggtaaacttgctttgttgcaaaaaaataaaaatt 19908449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 2167481 - 2167574
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||| | ||||||||||||||| |||||||  ||| |||||  ||||  ||||||||||| |||| | ||||||||||||||||||||||    
T  2167481 aatataaataggg-ggattcgaagaatcctaaccacttcttacttttccacaacc-aaaacaggtaa-cttggtatgttgcaaacagataaaaattg 2167574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 12411329 - 12411301
Alignment:
Q  69 aaacaggtaaacttgttgtgttgcaaaca 97  Q
    |||||||||||||||||||||||||||||    
T  12411329 aaacaggtaaacttgttgtgttgcaaaca 12411301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 16245593 - 16245687
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||| | ||||||| ||||| | |||| ||| ||| |||||||||||  ||||||||||| |||| | ||||||||| ||||||||||||    
T  16245593 aatataaataggg-ggattcggagaattctaaccgctgcttacttttctgcaaccaaaaacaggtaa-cttgctctgttgcaaatagataaaaattg 16245687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 72247 - 72151
Alignment:
Q  13 aatataaatagagtggattcgaagaatcca-accactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||| |||| |||||||||||||||  || |||| ||| |||||||||||| |||| | ||||||||| | ||||||||||||||||||||||    
T  72247 aatataaacagaggggattcgaagaatccttactactgcttacttttctgcaactaaaaatacgtaaacttgctctgttgcaaacagataaaaattg 72151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 25782014 - 25781919
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||| | |||| ||||||||||||||| ||| |||||||| |||||||||||  |||| ||||||||||| | ||||||||||||||||||||||    
T  25782014 aatatatacagaggggattcgaagaatcctaactactgtttacttttctgcaacc-aaaataggtaaacttgctctgttgcaaacagataaaaattg 25781919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 24475277 - 24475197
Alignment:
Q  28 gattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||||| |||||||  ||| |||||||||||  |||||||||||||||||| ||||||||||||||||| ||||    
T  24475277 gattcgaagaatcctaaccactacttacttttctgcaacc-aaaacaggtaaacttgttttgttgcaaacagataaagattg 24475197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 27737565 - 27737646
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||| |||| ||| ||| |||| ||||||  |||||||||||||||| | ||||||||||||||||||||||    
T  27737565 ggattcgaagaatcctaaccgctgcttacttttttgcaaca-aaaacaggtaaacttgctctgttgcaaacagataaaaattg 27737646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 24657338 - 24657425
Alignment:
Q  20 atagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaatt 107  Q
    |||||| ||||||||||||| | |||| ||| ||| |||||||||||  |||||||||||| | | | |||||||||||||||||||||    
T  24657338 atagaggggattcgaagaattctaaccgctgcttacttttctgcaacc-aaaacaggtaaattcgctctgttgcaaacagataaaaatt 24657425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 23844341 - 23844422
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||| ||||| |||| ||| ||| |||| ||||||  |||||||||||||||| | | ||||||||||||||||||||    
T  23844341 ggattcgaaaaatcctaaccgctgcttacttttatgcaacc-aaaacaggtaaacttggtctattgcaaacagataaaaattg 23844422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 22813626 - 22813678
Alignment:
Q  55 ttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||  |||||||||||||||| | ||||||||||| ||||||||||    
T  22813626 ttttctgcaacc-aaaacaggtaaacttgctttgttgcaaacaaataaaaattg 22813678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 14079320 - 14079416
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||| | | ||||||||||| | |||| ||| ||| ||||||| |||  |||| ||| ||||||  | ||||||||||||||||||||||    
T  14079320 aatataaatagggggaattcgaagaattctaaccgctgcttacttttctgtaaccaaaaataggaaaacttcctttgttgcaaacagataaaaattg 14079416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 20005824 - 20005876
Alignment:
Q  56 tttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||  |||||||||||||| | | ||||||||||| ||||||||||    
T  20005824 tttctgcaaccaaaaacaggtaaactcgctctgttgcaaacaaataaaaattg 20005876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 20144984 - 20145080
Alignment:
Q  13 aatataaatagagtggattcgaagaatcca-accactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||  |||| |||||||||||||||  ||| ||| ||  |||||||||||| |||| | ||||||||  | ||||||||||| ||||||||||    
T  20144984 aatataaccagaggggattcgaagaatccttaccgctgcttgcttttctgcaactaaaaatacgtaaactttctctgttgcaaacatataaaaattg 20145080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 22187855 - 22187759
Alignment:
Q  13 aatataaatagagtggattcgaagaatcca-accactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||  |||| |||||||||||||||  ||| ||| ||  |||||||||||| |||| | ||||||||  | ||||||||||| ||||||||||    
T  22187855 aatataaccagaggggattcgaagaatccttaccgctgcttgcttttctgcaactaaaaatacgtaaactttctctgttgcaaacatataaaaattg 22187759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 22410234 - 22410286
Alignment:
Q  56 tttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||  |||| ||| ||||||| | ||||||||||||||||||||||    
T  22410234 tttctgcaaccaaaaataggaaaacttgctctgttgcaaacagataaaaattg 22410286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 69323 - 69221
Alignment:
Q  7 tcgaagaatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaa 105  Q
    ||||| ||||||||||| ||| |||| |||||||| |||| ||| |||||||||||||  | | |||||||||||||  | |||||||||||||||||||    
T  69323 tcgaataatataaatagtgtgaattctaagaatcctaaccgctgcttatttttctgcatgtaagaacaggtaaactttctctgttgcaaacagataaaaa 69224  T
Q  106 ttg 108  Q
    |||    
T  69223 ttg 69221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 12208838 - 12208746
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaa 105  Q
    ||||||||||| | ||||||||||||||| |||| ||| ||| ||||||||| || |||||||||||||||| | |||||||||||||| ||||    
T  12208838 aatataaataggggggattcgaagaatcctaaccgctgcttacttttctgcagct-aaaacaggtaaacttgctctgttgcaaacagattaaaa 12208746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 21666485 - 21666565
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaatt 107  Q
    ||||||||||||||| ||||| || ||| |||||| ||||  |||||||||||||||||||| |||||||||||||||||||    
T  21666485 ggattcgaagaatcctaaccattgcttacttttctacaacc-aaaacaggtaaacttgttgtcttgcaaacagataaaaatt 21666565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 21449300 - 21449218
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||| |||| ||| ||| ||||||||| |  ||||||| |||||||| | ||||||||||||||||||||||    
T  21449300 ggattcgaagaatcctaaccgctgcttacttttctgcatccaaaaacagttaaacttgctatgttgcaaacagataaaaattg 21449218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 9401742 - 9401647
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||| ||||||||||||||| |||| ||  ||| |||| || |||  |||||||||||||||  | ||||||||||||||||||||||    
T  9401742 aatataaatagaggggattcgaagaatcctaaccgctacttacttttttgtaacc-aaaacaggtaaacttactctgttgcaaacagataaaaattg 9401647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 17610118 - 17610213
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaatt 107  Q
    |||||||| || | || ||| |||||||| |||| ||| ||| |||||||||||  |||||||||||||||| | ||||||||||| |||||||||    
T  17610118 aatataaaaaggggggtttcaaagaatcctaaccgctgcttacttttctgcaaccaaaaacaggtaaacttgctctgttgcaaacatataaaaatt 17610213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 15543843 - 15543925
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||| ||||  || ||| |||||||||||  |||||||||||||||  | ||||||||||| ||||||||||    
T  15543843 ggattcgaagaatcctaaccgttgcttacttttctgcaacaaaaaacaggtaaacttactatgttgcaaacaaataaaaattg 15543925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 21973081 - 21973163
Alignment:
Q  27 ggattcgaagaatcc---aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||||||   |||| ||||| | |||||||||||  ||||||||||| |||||| ||||||||||||||||||||||    
T  21973081 ggattcgaagaatcctctaaccgctgtt-acttttctgcaaccaaaaacaggtaa-cttgttatgttgcaaacagataaaaattg 21973163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 17359398 - 17359302
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||| ||||||||||||||| |||| |   ||| |||| ||||||  |||||||||||| ||| | |||||| | |||||||||||||    
T  17359398 aatataaatagaggggattcgaagaatcctaaccgcatcttacttttatgcaaccaaaaacaggtaaatttgctatgttgccagcagataaaaattg 17359302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 29242688 - 29242648
Alignment:
Q  68 aaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  29242688 aaaacaggtaaacttgctctgttgcaaacagataaaaattg 29242648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 16916817 - 16916904
Alignment:
Q  22 agagtggattcgaagaatccaacca-ctgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||||||||||||||| |||  ||| ||| |||||||||||  |||||||||||| | | | ||||||||| ||||||||||||    
T  16916817 agaggggattcgaagaatcctacccgctgcttacttttctgcaaccaaaaacaggtaaattcgctctgttgcaaagagataaaaattg 16916904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 16179213 - 16179147
Alignment:
Q  42 aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||| ||| |||||||||||  |||| ||||||||||| | |||||||| |||||||||||||    
T  16179213 aaccgctgcttacttttctgcaaccaaaaataggtaaacttgctctgttgcaatcagataaaaattg 16179147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 14781735 - 14781824
Alignment:
Q  20 atagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||| ||||||||||||||| |||  ||| | | |||||||||||  |||||||||||| ||| | || |||||||| ||||||||||    
T  14781735 atagaggggattcgaagaatcctaactgctgatcacttttctgcaaccaaaaacaggtaaatttgctctgatgcaaacatataaaaattg 14781824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 25405536 - 25405588
Alignment:
Q  56 tttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||  |||||| ||||||||| | ||||||||||| ||||||||||    
T  25405536 tttctgcaaccaaaaacaagtaaacttgctctgttgcaaacaaataaaaattg 25405588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 31235911 - 31236007
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||| | |||| |||||||  ||||  || ||| |||| ||||||  |||||| ||||||||| | ||||||||| ||||||||||||    
T  31235911 aatataaatagagggaattcaaagaatcttaaccgttgcttacttttatgcaaccaaaaacaagtaaacttgctctgttgcaaagagataaaaattg 31236007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 20744546 - 20744627
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||| |||| ||| ||| |||||| ||||  |||||||||||||||| | ||||||||||||||||||||||    
T  20744546 ggattcgaagaatcctaaccgctgcttacttttctacaacc-aaaacaggtaaacttgctatgttgcaaacagataaaaattg 20744627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 24245420 - 24245499
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaat 106  Q
    ||||||||||||||| ||||  || ||| |||||||||||| |||||||||||||||| | ||||| ||||| ||||||||    
T  24245420 ggattcgaagaatcctaaccgttgcttacttttctgcaact-aaaacaggtaaacttgctttgttggaaacaaataaaaat 24245499  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 17432103 - 17432025
Alignment:
Q  29 attcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaatt 107  Q
    ||||||||||||| |||| ||| ||| |||||||||||  |||||| ||||||||| | ||||||||||||| |||||||    
T  17432103 attcgaagaatcctaaccgctgcttacttttctgcaacc-aaaacaagtaaacttgctctgttgcaaacagaaaaaaatt 17432025  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 28664989 - 28664903
Alignment:
Q  22 agagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||||||||||||||  ||||  || |||||||||||||||  |||||||||||| | | | ||||||||||||||||||||||    
T  28664989 agaggggattcgaagaatcttaaccgttgcttatttttctgcaacc-aaaacaggtaaattcgctctgttgcaaacagataaaaattg 28664903  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 16523672 - 16523761
Alignment:
Q  20 atagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||| |||||| |||||||| |||| ||| ||| ||||||  |||  |||||||||||| | | | ||||||||||||||||||||||    
T  16523672 atagaggggattcaaagaatcctaaccgctgcttacttttctataacaaaaaacaggtaaattcgctctgttgcaaacagataaaaattg 16523761  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 20563997 - 20564050
Alignment:
Q  55 ttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||  |||||| ||||| ||| | ||||||||||||||||||||||    
T  20563997 ttttctgcaaccaaaaacaagtaaatttgctctgttgcaaacagataaaaattg 20564050  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 20315347 - 20315387
Alignment:
Q  68 aaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  20315347 aaaacatgtaaacttgctttgttgcaaacagataaaaattg 20315387  T

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Target: scaffold0638 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 684 - 780
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||| |||| || |||||||||||  |||| ||  ||| |||||||||||  |||||||||||||||  | ||||||||||||||||||||||    
T  684 aatataaacagagggggttcgaagaatcttaaccgcttcttacttttctgcaaccaaaaacaggtaaactttctctgttgcaaacagataaaaattg 780  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 29382243 - 29382319
Alignment:
Q  33 gaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||| |||||||| ||| |||||||||||  |||| ||||| ||||| | ||||||||||||||||||||||    
T  29382243 gaagaatcctaaccactgcttacttttctgcaaccaaaaataggtacacttgctatgttgcaaacagataaaaattg 29382319  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 27659670 - 27659576
Alignment:
Q  13 aatataaatagagtggattcgaagaatccaaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||| |||| |||| | |||||||||||| ||| ||| |||||||||||  |||||||||||||||| | | ||||||| |||| |||||||    
T  27659670 aatataaacagaggggat-caaagaatccaaccgctgcttaattttctgcaacaaaaaacaggtaaacttgctcttttgcaaatagattaaaattg 27659576  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 17101797 - 17101863
Alignment:
Q  42 aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||| ||| |||| |||||   |||||||||||||||| | ||||||||||||||||||||||    
T  17101797 aaccactgcttacttttttgcaatcaaaaacaggtaaacttgctctgttgcaaacagataaaaattg 17101863  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 24114146 - 24114241
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||| | ||||||||||||||| |||| ||| ||| ||||| |  ||  |||||||||||||||| | || |||||||||||||||||||    
T  24114146 aatataaataggggggattcgaagaatcctaaccgctgcttacttttcagatacc-aaaacaggtaaacttgctctgctgcaaacagataaaaattg 24114241  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 24269833 - 24269738
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||| || | ||||||||||||||| |||| ||| ||| |||||||||||  ||||||||||||| |  | ||||||||||||||||| ||||    
T  24269833 aatataaacaggggggattcgaagaatcctaaccgctgcttacttttctgcaaccaaaaacaggtaaac-tactctgttgcaaacagataaagattg 24269738  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 13314868 - 13314950
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    ||||||||||||||  ||||  || ||| |||||||||||  |||||||||||| |||||  |||||||||| ||||||||||    
T  13314868 ggattcgaagaatcttaaccgttgcttacttttctgcaaccaaaaacaggtaaatttgttcagttgcaaacatataaaaattg 13314950  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 23893090 - 23893171
Alignment:
Q  27 ggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||| |||||||| ||| |||  ||| |||||||||||  |||||||||||| ||| | ||||||||||||||||||||||    
T  23893090 ggattcaaagaatcctaactactagttacttttctgcaacc-aaaacaggtaaatttgctttgttgcaaacagataaaaattg 23893171  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 25182320 - 25182385
Alignment:
Q  42 aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||||||||||  |||||||||||  ||||||||| |||||| | ||||||||| ||||||||||||    
T  25182320 aaccactgtttccttttctgcaaccaaaaacaggt-aacttgctctgttgcaaatagataaaaattg 25182385  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 24110532 - 24110623
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaa 104  Q
    |||||||| || | ||||||||| ||||| |||| ||| ||| |||||||||||  ||||||| |||||||  | ||||||||||||||||||    
T  24110532 aatataaacaggggggattcgaataatcctaacccctgcttacttttctgcaacc-aaaacagataaacttcctctgttgcaaacagataaaa 24110623  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 26394562 - 26394644
Alignment:
Q  13 aatataaatagagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaac 96  Q
    ||||||||||| | ||||||||||||||| ||||  || ||| |||||||||||  |||||||||||||||| | ||||||||||    
T  26394562 aatataaataggg-ggattcgaagaatcctaaccgttgcttacttttctgcaacc-aaaacaggtaaacttgctttgttgcaaac 26394644  T

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Target: scaffold0671 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 658 - 572
Alignment:
Q  22 agagtggattcgaagaatcc-aaccactgtttatttttctgcaactgaaaacaggtaaacttgttgtgttgcaaacagataaaaattg 108  Q
    |||| ||||||||||||||| |||| ||| ||| |||||||||||  |||||||||||| | | | ||||||||||||||||||||||    
T  658 agaggggattcgaagaatcctaaccgctgcttacttttctgcaacc-aaaacaggtaaattcgctctgttgcaaacagataaaaattg 572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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