View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_low_1 (Length: 852)
Name: NF20050_low_1
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 758; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 21 - 838
Target Start/End: Complemental strand, 13707484 - 13706668
Alignment:
| Q |
21 |
tccctccctccccccttatttagttttaatttcttacacgtaggtaggtgtagtatgaaagactgtgacacttctcacatgatacatgttttgtttgata |
120 |
Q |
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| T |
13707484 |
tccctccctccccccttatttagttttaatttcttacacgtaggtaggtgtagtatgaaagactgcgacacttctcacatgatacatgttttgtttgata |
13707385 |
T |
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| Q |
121 |
gaaactagtcaacaacctagcagtggttaatgtgtgatattctcttagatgtgtctactacctttggtttagaaagatgatagatatggtgttgggattt |
220 |
Q |
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| T |
13707384 |
gaaactagccagcaacctaagaatggttaatgtgtgatattctcttagatgtgtctactacctttggtttagaaagatgatagatatggtgttgggattt |
13707285 |
T |
|
| Q |
221 |
tggaatgaaaaatcttatgagcatgcatatgatgaattgaaaaatgaaatatgtatgtaacaggggtgattttagtgtttgttatcaactggaccatgat |
320 |
Q |
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| T |
13707284 |
tggaatgaaaaatcttatgagcatgcatatgatgaattgaaaaatgaaatatgtatgtaacaggggtgattttagtgtttgttatcaactggaccatgat |
13707185 |
T |
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| Q |
321 |
gctgcttaggcatttctcaactccatgaaccgtgatgctgcttgtagatcttgatacgtacctactattctcccatgttggatgccttctttgttcatct |
420 |
Q |
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| T |
13707184 |
gctgcttaggcatttctcaactccatgaaccgtgatgctgcttgtagatcttgatacgtacctactattctcccatgttggatgccttctttgttcatct |
13707085 |
T |
|
| Q |
421 |
ttgagaaaaatacatcaaaattgatttttaatcaaccaaagtataagtttgttgttttgaatcttgagaaattgaaaatcatatttaataagcatgtgta |
520 |
Q |
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| T |
13707084 |
ttgagaaaaatacatcaaaattgatttttaatcaaccaaagtataagtttgttgttttgaatcttgagaaattgaaaatcatatttaataagcatgtgta |
13706985 |
T |
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| Q |
521 |
tctacaactaacttttgttgatactatacatcnnnnnnnnncttttgttgatactagttgatactccaacatcagctaacaacaaatgtctaacttgaga |
620 |
Q |
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| T |
13706984 |
tctacaactaacttttgttgatactatacatc-aaaaaaaacttttgttgatactagttgatactccaacatcagctaacaacaaatgtctaacttgaga |
13706886 |
T |
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| Q |
621 |
ggacaaaacacatcgataatgaacaattcacattcacaaaaccccgtattagccaaaacatcaacacattttattagcctcccggtaacagtgacaacct |
720 |
Q |
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| T |
13706885 |
ggacaaaacacatcgataatgaacaattcacattcacaaaaccccgtattagccaaaacatcaacacattttattagcctcccggtaacagtgacaacct |
13706786 |
T |
|
| Q |
721 |
gctctttaaatgtcatttacctgtaatgtcagtttactattttttgtctcataaccaatccgaatgccctgcgaacactcctaaatgttgaaagttgtgg |
820 |
Q |
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| T |
13706785 |
gctctttaaatgtcatttacctgtaatgtcagtttactattttttgtctcataaccaatccgaatgccccgcgaacactcctaaatgttgaaagttgtgg |
13706686 |
T |
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| Q |
821 |
catttaggtaggcttcat |
838 |
Q |
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| T |
13706685 |
catttaggtaggcttcat |
13706668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 2465986 - 2465920
Alignment:
| Q |
194 |
aagatgatagatatggtgttgggattttggaatgaaaaatcttatgagcatgcatatgatgaattga |
260 |
Q |
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| T |
2465986 |
aagatgatatatatggttttgggatttgggagtgaaaaatcttataagcatgcatatgaagaattga |
2465920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 4093101 - 4093036
Alignment:
| Q |
183 |
tttggtttagaaagatgatagatatggtgttgggattttggaatgaaaaatcttatgagcatgcat |
248 |
Q |
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| T |
4093101 |
tttgatttagaaagatgatatatatggttttgggatatgggagtgaaaaatcttataagcatgcat |
4093036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 2466140 - 2466091
Alignment:
| Q |
108 |
gttttgtttgatagaaactagtcaacaacctagcagtggttaatgtgtga |
157 |
Q |
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| T |
2466140 |
gttttgtttgatagaaacatatcaacaacctaacagtggctaatgtgtga |
2466091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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