View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20050_low_10 (Length: 459)

Name: NF20050_low_10
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20050_low_10
NF20050_low_10
[»] chr6 (2 HSPs)
chr6 (201-442)||(8383559-8383809)
chr6 (2-175)||(8383329-8383503)
[»] chr1 (8 HSPs)
chr1 (282-441)||(6767737-6767896)
chr1 (282-441)||(36272166-36272325)
chr1 (320-392)||(17050688-17050760)
chr1 (321-374)||(31389940-31389993)
chr1 (320-392)||(40649413-40649485)
chr1 (320-390)||(12926110-12926180)
chr1 (320-390)||(20794514-20794584)
chr1 (18-121)||(17050950-17051054)
[»] chr2 (1 HSPs)
chr2 (282-441)||(23462675-23462834)
[»] chr3 (3 HSPs)
chr3 (320-392)||(8436438-8436510)
chr3 (320-392)||(8439983-8440055)
chr3 (57-121)||(8439720-8439784)
[»] chr7 (1 HSPs)
chr7 (320-389)||(32859456-32859525)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 201 - 442
Target Start/End: Original strand, 8383559 - 8383809
Alignment:
Q  201 ggtgttttattgtattctattgttgatgatgaaagtggtggtttttctgttatatttgagaatgaatgaaa---------aaagtacggaatgttatcaa 291  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||         |||||||| |||||||||||    
T  8383559 ggtgttttattggattctattgttgatgatgaaagtggttgtttttctattatatttgagaatgaatgaaaggttttttgaaagtacgtaatgttatcaa 8383658  T
Q  292 tgccatggttgttgttacaaaaactatgtttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8383659 tgccatggttgttgttacaaaaactatgtttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattgattgccattttggaacc 8383758  T
Q  392 tattataagcgtagaatggaaaggaatttttatgcacaagaaagggattga 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8383759 tattataagcgtagaatggaaaggaatttttatgcacaagaaagggattga 8383809  T

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Target: chr6; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 8383329 - 8383503
Alignment:
Q  2 tgaacccaagtcaacaacccacctcatcacaccttcaaaa-aactctaataggtacccattgcttgggagtttcagctgccaaaatcgcttacccaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  8383329 tgaacccaagtcaacaacccacctcatcacaccttcaaaaaaactctaataggtacccattgcttgggagtttcagttgccaaaatcgcttgcccaaatc 8383428  T
Q  101 caatcaattcaaatagactaaatatatagaaaaagaataatcaacacatacnnnnnnncccataactcaaccaca 175  Q
    ||||||||||||||| |||||||| |||||||||| |||||||||||||||       |||||||||||||||||    
T  8383429 caatcaattcaaataaactaaatacatagaaaaaggataatcaacacatacaaaaaaacccataactcaaccaca 8383503  T

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Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 282 - 441
Target Start/End: Original strand, 6767737 - 6767896
Alignment:
Q  282 atgttatcaatgccatggttgttgttacaaaaactatgtttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgcca 381  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||   |    
T  6767737 atgttatcaatgccatggttgttgttacaaaaactatgcttttcaatattaatgatgaattttactttttccatgtcttattatttaaaattggttttta 6767836  T
Q  382 ttttggaacctattataagcgtagaatggaaaggaatttttatgcacaagaaagggattg 441  Q
    ||||||| ||||||||||  ||||||||||| || |||||||||||||||||||||||||    
T  6767837 ttttggatcctattataatggtagaatggaaggggatttttatgcacaagaaagggattg 6767896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 282 - 441
Target Start/End: Original strand, 36272166 - 36272325
Alignment:
Q  282 atgttatcaatgccatggttgttgttacaaaaactatgtttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgcca 381  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||   |    
T  36272166 atgttatcaatgccatggttgttgttacaaaaactatgcttttcaatattaatgatgaattttactttttccatgtcttattatttaaaattggttttta 36272265  T
Q  382 ttttggaacctattataagcgtagaatggaaaggaatttttatgcacaagaaagggattg 441  Q
    ||||||| ||||||||||  ||||||||||| || |||||||||||||||||||||||||    
T  36272266 ttttggatcctattataatggtagaatggaaggggatttttatgcacaagaaagggattg 36272325  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 392
Target Start/End: Complemental strand, 17050760 - 17050688
Alignment:
Q  320 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacct 392  Q
    |||||||| |||||||||  |||||| ||||| |||||||||||||| ||||||||||  |||||||||||||    
T  17050760 tttttcaacattaatggtagattttagttttttcatgtctaattattgaaaattggttttcattttggaacct 17050688  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 31389940 - 31389993
Alignment:
Q  321 ttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattg 374  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||| |||||||    
T  31389940 ttttcaatattaatggtggattttagttttttcatgtctaattattgaaaattg 31389993  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 40649413 - 40649485
Alignment:
Q  320 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacct 392  Q
    |||||||| |||||||||  |||||| ||||| ||||||||| |||| ||||||||||  |||||||||||||    
T  40649413 tttttcaacattaatggtagattttagttttttcatgtctaaatattgaaaattggttttcattttggaacct 40649485  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 12926180 - 12926110
Alignment:
Q  320 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaac 390  Q
    |||||||| |||||||||  |||||| ||||| |||||||||| ||| ||||||||||  |||||||||||    
T  12926180 tttttcaacattaatggtagattttagttttttcatgtctaataattgaaaattggttttcattttggaac 12926110  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 20794584 - 20794514
Alignment:
Q  320 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaac 390  Q
    |||||||| ||||||| |  |||||| ||||| |||||||||||||| ||||||||||  ||| |||||||    
T  20794584 tttttcaacattaatgatagattttagttttttcatgtctaattattgaaaattggttttcatcttggaac 20794514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 17051054 - 17050950
Alignment:
Q  18 acccacctcatcacaccttcaaaaaa-ctctaataggtacccattgcttgggagtttcagctgccaaaatcgcttacccaaatccaatcaattcaaatag 116  Q
    |||||||| || |||||| ||||||| ||||||| || | ||||||||| |||| ||||| ||||| |||| |||  ||| || |||||| |||||| ||    
T  17051054 acccaccttattacacctccaaaaaaactctaatgggcatccattgcttaggagcttcagttgccataatcacttgtccatattcaatcagttcaaacag 17050955  T
Q  117 actaa 121  Q
    |||||    
T  17050954 actaa 17050950  T

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Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 282 - 441
Target Start/End: Complemental strand, 23462834 - 23462675
Alignment:
Q  282 atgttatcaatgccatggttgttgttacaaaaactatgtttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgcca 381  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||   |    
T  23462834 atgttatcaatgtcatggttgttgttacaaaaactatgcttttcaatattaatgatgaattttactttttccatgtcttattatttaaaattggttttta 23462735  T
Q  382 ttttggaacctattataagcgtagaatggaaaggaatttttatgcacaagaaagggattg 441  Q
    ||||||| ||||||||||  ||||||||||| || |||| ||||||||||||||||||||    
T  23462734 ttttggatcctattataatggtagaatggaaggggatttgtatgcacaagaaagggattg 23462675  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 8436438 - 8436510
Alignment:
Q  320 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacct 392  Q
    |||||||| |||||||||  |||||| ||||| |||||||||||||| ||||||||||  |||||||||||||    
T  8436438 tttttcaacattaatggtagattttagttttttcatgtctaattattaaaaattggttttcattttggaacct 8436510  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 8439983 - 8440055
Alignment:
Q  320 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacct 392  Q
    |||||||| |||||||||  |||||| ||||| |||||||||||||| ||||||||||  |||||||||||||    
T  8439983 tttttcaacattaatggtagattttagttttttcatgtctaattattaaaaattggttttcattttggaacct 8440055  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 8439720 - 8439784
Alignment:
Q  57 ccattgcttgggagtttcagctgccaaaatcgcttacccaaatccaatcaattcaaatagactaa 121  Q
    ||||||||| |||| ||||| ||||| ||||||||  ||| || ||||||||||||| |||||||    
T  8439720 ccattgcttaggagcttcagttgccacaatcgcttgtccatattcaatcaattcaaagagactaa 8439784  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 32859525 - 32859456
Alignment:
Q  320 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaa 389  Q
    |||||||| |||||||||  |||||| ||||| |||||||||||||| ||||||| ||  ||||||||||    
T  32859525 tttttcaacattaatggtagattttagttttttcatgtctaattattgaaaattgattttcattttggaa 32859456  T

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