View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20050_low_11 (Length: 421)
Name: NF20050_low_11
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 39544744 - 39544354
Alignment:
| Q |
16 |
atattgacgtgaatgaaaataataacctttatattggtgaatcaaaccctacttacccgaaaacaagtttcagaaaaagctccaaagtaacaagtcaatc |
115 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544744 |
atattgacgtgaatgaaaataacaacctttatattggtgaatcaaaccctacttacccaaaaacaagtttcagaaaaagctccaaagtaacaagtcaatc |
39544645 |
T |
|
| Q |
116 |
accagtgtcttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtacgtttc |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39544644 |
accagtgttttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtatgtttc |
39544545 |
T |
|
| Q |
216 |
cgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctgttacaaaatttcaactctgaaaaca |
315 |
Q |
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| T |
39544544 |
catttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctgttacaaaatttcaactctgaaaaca |
39544445 |
T |
|
| Q |
316 |
ccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcttcatttgc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544444 |
ccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcttcatttgc |
39544354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 39521954 - 39521561
Alignment:
| Q |
16 |
atattgacgtgaatgaaaataataacctttatattggtgaatcaaaccctacttacccgaaaacaagtttcagaaaaag---ctccaaagtaacaagtca |
112 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| | ||||| |||| |||||||||||||||||| |
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| T |
39521954 |
atatcgacgtgaatgaaaataacaacctttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaaagtaacaagtca |
39521855 |
T |
|
| Q |
113 |
atcaccagtgtcttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtacgt |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || |||| |||| | |||||||||||||| ||| | |||| |||||| |||||||||||| |
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| T |
39521854 |
atcaccagtgtcttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaagcaacacttacatggtacgt |
39521755 |
T |
|
| Q |
213 |
ttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctgttacaaaatttcaactctgaaa |
312 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||||| |||||| |
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| T |
39521754 |
ttccatttcttttcattctcttcaccaactaacctttcctctgcaaaattcaccgtttcagttcctggtttccttctgttacataatttcaacgctgaaa |
39521655 |
T |
|
| Q |
313 |
acaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcttcatttgc |
406 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39521654 |
acaccaccaactctcctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcatcatttgc |
39521561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 39576599 - 39576206
Alignment:
| Q |
16 |
atattgacgtgaatgaaaataataacctttatattggtgaatcaaaccctacttacccgaaaacaagtttcag---aaaaagctccaaagtaacaagtca |
112 |
Q |
| |
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|||| ||||||||||||||||| || |||||||||||||||||||||| | ||||||| |||| | ||||| || ||| |||| || ||| | || |
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| T |
39576599 |
atatcgacgtgaatgaaaataagaatctttatattggtgaatcaaaccatgcttaccctaaaaaatcattcagccaaagaagttccatagaaaccaatcc |
39576500 |
T |
|
| Q |
113 |
atcaccagtgtcttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtacgt |
212 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| || |||||||| || || ||||| |||||||||||||||||||||||||| || ||||||||| |
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| T |
39576499 |
atcatcagtgtcttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccataccaaacaacacttatatggtacgt |
39576400 |
T |
|
| Q |
213 |
ttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctgttacaaaatttcaactctgaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| || ||||||||| |||||||||| ||||||||| |||||| |
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|
| T |
39576399 |
ttccgtttcttttcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttccttctgttacataatttcaacgctgaaa |
39576300 |
T |
|
| Q |
313 |
acaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcttcatttgc |
406 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
39576299 |
acaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgc |
39576206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 29 - 414
Target Start/End: Complemental strand, 39525435 - 39525050
Alignment:
| Q |
29 |
tgaaaataataacctttatattggtgaatcaaaccctacttacccgaaaacaagtttcagaaaaagctccaaagtaacaagtcaatcaccagtgtcttca |
128 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||| | ||||| |||||||||||||| |||||||||| || ||| ||||||||| ||||| ||||| |
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| T |
39525435 |
tgaaagtaataaagtttatattggggaatcaaaccccaactaccctaaaacaagtttcagcaaaagctccatagaaaccagtcaatcatcagtgccttca |
39525336 |
T |
|
| Q |
129 |
cctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtacgtttccgtttcttttcat |
228 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| || || || ||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
39525335 |
cctctctaccaaacagcaaggatatttcattccgaatctttatacgagttcaaaaccgtaccaaacaacacctacatggtacgtttccatttcttttcat |
39525236 |
T |
|
| Q |
229 |
tctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctgttacaaaatttcaactctgaaaacaccaccaactcttc |
328 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| | |
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| T |
39525235 |
tctcttcaccacttaacctttccactgcaaaattcaccgtttcagtccctggtttcattctgttacaaaatttcgatgcaaaaaacaccaccaactctcc |
39525136 |
T |
|
| Q |
329 |
tttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcttcatttgcctatgcta |
414 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||| | | |||||||||| ||||| |
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|
| T |
39525135 |
tttagtaaaagagtattaccttaaaatcatcagaaaaaaattcaaaatcacgttcacacctcaaaaagcatcatttgcctttgcta |
39525050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 68 - 393
Target Start/End: Complemental strand, 39511653 - 39511328
Alignment:
| Q |
68 |
ttacccgaaaacaagtttcagaaaaagctccaaagtaacaagtcaatcaccagtgtcttcacctctctaccaaacagcaaggatattccattccgagtct |
167 |
Q |
| |
|
|||||| | |||||||||||| |||||||||| || ||||| ||||||| |||| ||||| ||||||||||||| |||||||| |||| |||||| ||| |
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|
| T |
39511653 |
ttaccctataacaagtttcagcaaaagctccatagaaacaaatcaatcatcagttccttcatctctctaccaaactgcaaggattttccgttccgaatct |
39511554 |
T |
|
| Q |
168 |
tcctatgaattttctaccataccaaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatg |
267 |
Q |
| |
|
| || ||||| ||||| |||||||||||||| ||||||||||||| |||| ||||||||||| |||||||||| |||||| |||||||||||| || |
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|
| T |
39511553 |
tggtacgaattcaaaaccatcccaaacaacacctatatggtacgtttccatttcctttcattctctacaccaactaaactttccactgcaaaattcactg |
39511454 |
T |
|
| Q |
268 |
tttcagtccctggtttcattctgttacaaaatttcaactctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaag |
367 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||| |
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|
| T |
39511453 |
tttcagttcctggtttcattctgttacaaaatttcaacgctgaaaacaccaccaactctcctttagtaaaagaatactacgttcaaatcatcagaaaaag |
39511354 |
T |
|
| Q |
368 |
attcacaatcactttcacacctcaaa |
393 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
39511353 |
attcaaaatcactttcacacctcaaa |
39511328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 39581124 - 39580840
Alignment:
| Q |
29 |
tgaaaataataacctttatattggtgaatcaaaccctacttacccgaaaacaagtttcagaaaaagctccaaagtaacaagtcaatcaccag---tgtc- |
124 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| || | || |
|
|
| T |
39581124 |
tgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaagctccaaagtaacaagtcaatcatcatcactatca |
39581025 |
T |
|
| Q |
125 |
--------ttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtacgtttcc |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| | |||| ||| ||||| ||| ||||||||||||| |||||||||||||||| |
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|
| T |
39581024 |
acaccactttcacctctctaccaaacagcaattatattcccttccaaatctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttcc |
39580925 |
T |
|
| Q |
217 |
gtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctgttacaaaattt |
301 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||| ||||||||||||| ||||| | || |||||| ||||||||||||||| |
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|
| T |
39580924 |
atttctttctattctctttaccaactaatctttccactgcaaaattcaacgtttcctttccaggtttctctctgttacaaaattt |
39580840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 39580816 - 39580746
Alignment:
| Q |
336 |
aaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcttcatttgc |
406 |
Q |
| |
|
||||| |||| | ||||||||| | | |||||||||| ||||||||||||||||||||| || |||||||| |
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|
| T |
39580816 |
aaagaatatttctttaaaatcacccgtaaaagattcaaaatcactttcacacctcaaacctcatcatttgc |
39580746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 77 - 377
Target Start/End: Original strand, 3331399 - 3331696
Alignment:
| Q |
77 |
aacaagtttcagaaaaagctccaaagtaacaagtcaatcaccagtgtcttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaa |
176 |
Q |
| |
|
|||||||||||| ||||||||| || ||||| ||||| | |||| |||||||||| ||||||| |||||| || |||||||| || |||| || | |
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|
| T |
3331399 |
aacaagtttcagcaaaagctccgtagaaacaaatcaataatcagttccttcacctctttaccaaagagcaagaattttccattctgaatcttggtag--a |
3331496 |
T |
|
| Q |
177 |
ttttctaccataccaaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtcc |
276 |
Q |
| |
|
|| ||| || |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||||| ||||| |||| || |
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|
| T |
3331497 |
ttcactattatcccaaacaacacctacatggtacgtttccatttcctttcattctcttcaccaattaacctttccactgcaaa-ttcaacatttctgttt |
3331595 |
T |
|
| Q |
277 |
ctggtttcattctgttacaaaatttcaactctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaat |
376 |
Q |
| |
|
| |||||| |||||||| |||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
3331596 |
ccggtttccttctgttaactaatttcgacgctaaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcataaaaagattcacaat |
3331695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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