View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_low_14 (Length: 346)
Name: NF20050_low_14
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 43810703 - 43810386
Alignment:
| Q |
12 |
atgaagaaggacccttttgaaatttcagatgacttttacaaagacattgaaaccaagcagcaacaaaaacttccggccgtagtgaccaacaagaaggtgt |
111 |
Q |
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| T |
43810703 |
atgaagaaggacccttttgaaatttcagatgacttttacaaagacattgaaaccaagcagcaacaaaaacttccggccgtagtgaccaacaagaaggtgt |
43810604 |
T |
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| Q |
112 |
catacctcgagacattgggagtcatgagaagtccgacgtcgcgtcattaaagcaccgtacttagattcatagagatgtttaattcgtcggagtcttgttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43810603 |
catacctcgagacattgggagtcatgagaagtccgacgtcgcgtcattaaagcaccgtacttagattcatagagatgtttaattcgtcggagtcttgttt |
43810504 |
T |
|
| Q |
212 |
gtttttgatcgattctctccttttgtacataggaatggcagaatcaattgaaaaactatcagagatttttcctctgaaggatttgtagtctggtagctac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43810503 |
gtttttgatcgattctctccttttgtacataggaatggcagaatcaattgaaaaactatcagagatttttcctctgaaggatttgtagtctggtagctac |
43810404 |
T |
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| Q |
312 |
caacttgaggttttttat |
329 |
Q |
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|||||||||||||||||| |
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| T |
43810403 |
caacttgaggttttttat |
43810386 |
T |
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