View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_low_16 (Length: 316)
Name: NF20050_low_16
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 40777647 - 40777905
Alignment:
| Q |
13 |
aaggagatttagatagaaattaagttatatttaactacaaattcatggtctgttaccacatatgataaacaaagccgaagatgcacaaatgatggaaact |
112 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
40777647 |
aaggagatttagatagaaattaagtcctatttagctacaaattcatggtctgttaccacatatgataaacaaagccgaagatgcacaagtgatggaaatt |
40777746 |
T |
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| Q |
113 |
gttatacaaaacaaataacagggaccataaaacaaactctcattctctaaaataatgagacaagttatatcttccatcattagcaacatcttgtaatctt |
212 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40777747 |
gttatacaaaacaact--cagggaccataaaacaaactctcattctctaaaataatgagacaagttatatcttccatcattagcaacatcttgtaatctt |
40777844 |
T |
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| Q |
213 |
attacaactctcattagctaacaacatcctctcatcttaata--aagctagcaatcagggc |
271 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
40777845 |
attataactctcattagctaacagcatcctctcatcttaataataagctagcaatcagggc |
40777905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 25684210 - 25684451
Alignment:
| Q |
13 |
aaggagatttagatagaaattaagttatatttaactacaaattcatggtctgttaccacatatgataaacaaagccgaagatgcacaaatgatggaaact |
112 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||| |
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| T |
25684210 |
aaggagatttagatagaaattaagtcctattcaactacaaattcatggtatgttaccacataatataaacaaagcgcaagatgcacaagtgatggaaact |
25684309 |
T |
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| Q |
113 |
gttatacaaaacaaataacagggaccataaaacaaa--ctctcattctctaaaataatgagacaagttatatcttccatcattagcaacatcttgtaatc |
210 |
Q |
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| T |
25684310 |
gttatacaaa-caact--caaggacaatgaaaaaaaatctctcattctctaaaataatgagacaagttatatcttccatcattagcaacatcttgtaatc |
25684406 |
T |
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| Q |
211 |
ttattacaactctcattagctaacaacatcctctcatcttaataa |
255 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
25684407 |
atattacaactctcattagctaacatcatcttctcatcttaataa |
25684451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 24745466 - 24745406
Alignment:
| Q |
26 |
tagaaattaagttatatttaactacaaattcatggtctgttaccacatatgataaacaaag |
86 |
Q |
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|||||||||||| |||| | |||| || ||||||||||||||||| |||||||||||||| |
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| T |
24745466 |
tagaaattaagtcctattcagctactaaatcatggtctgttaccacgtatgataaacaaag |
24745406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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