View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20050_low_18 (Length: 302)

Name: NF20050_low_18
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20050_low_18
NF20050_low_18
[»] chr3 (7 HSPs)
chr3 (69-288)||(49582611-49582829)
chr3 (183-256)||(38183115-38183189)
chr3 (183-256)||(17731076-17731150)
chr3 (183-256)||(19032307-19032381)
chr3 (183-294)||(3371407-3371522)
chr3 (27-71)||(49582885-49582929)
chr3 (184-216)||(3372378-3372410)
[»] chr8 (3 HSPs)
chr8 (132-264)||(7278017-7278144)
chr8 (183-256)||(392318-392392)
chr8 (183-256)||(7284614-7284688)
[»] chr7 (6 HSPs)
chr7 (183-256)||(5448871-5448945)
chr7 (183-253)||(5439861-5439932)
chr7 (183-256)||(5438868-5438942)
chr7 (132-257)||(15588619-15588739)
chr7 (183-256)||(5447878-5447952)
chr7 (186-257)||(15589801-15589873)
[»] chr5 (6 HSPs)
chr5 (183-288)||(41341045-41341150)
chr5 (183-256)||(35428332-35428406)
chr5 (183-256)||(35429915-35429989)
chr5 (183-263)||(7400477-7400558)
chr5 (183-252)||(18009237-18009307)
chr5 (183-229)||(30921629-30921676)
[»] chr6 (6 HSPs)
chr6 (134-260)||(32342117-32342238)
chr6 (183-256)||(14763838-14763912)
chr6 (183-256)||(21118721-21118795)
chr6 (183-253)||(14766415-14766486)
chr6 (178-263)||(20727510-20727596)
chr6 (183-256)||(21118439-21118513)
[»] chr1 (5 HSPs)
chr1 (183-256)||(6138233-6138307)
chr1 (183-256)||(6139854-6139928)
chr1 (182-263)||(43834986-43835068)
chr1 (183-256)||(52022162-52022236)
chr1 (132-294)||(5397346-5397497)
[»] chr4 (4 HSPs)
chr4 (94-288)||(14508733-14508921)
chr4 (183-263)||(10550026-10550107)
chr4 (184-287)||(31322582-31322685)
chr4 (132-257)||(41848309-41848429)
[»] chr2 (3 HSPs)
chr2 (183-235)||(31073691-31073744)
chr2 (183-256)||(4660118-4660191)
chr2 (135-263)||(20594648-20594771)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 69 - 288
Target Start/End: Complemental strand, 49582829 - 49582611
Alignment:
Q  69 aaatcatgaccgttgtctataaaatcaaataattattactatgtgaannnnnnnacgactcaaagacttctctcactctcactccaatgctccggtacaa 168  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||    
T  49582829 aaatcatgaccgttgtctataaaaccaaagaatt-ttactatgtgaaattttttacgacacaaagacttctctcactctcactccaatgctccggtacaa 49582731  T
Q  169 ccacactatcacaatcacaaagcaaatatttaaactaagttagatataagttaaagtgctactgactaatgcatctaaaaacaaagaacttaggtcttta 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49582730 ccacactatcacaatcacaaagcaaatatttaaactaagttagatataagttaaagtgctactgactaatgcatctaaaaacaaagaacttaggtcttta 49582631  T
Q  269 tatctaaccttggtcttccc 288  Q
    |||||||| |||||||||||    
T  49582630 tatctaacattggtcttccc 49582611  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 38183115 - 38183189
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||  |||||||||||||||||||    
T  38183115 tcacaaagcaaatatttaacctaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaa 38183189  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 17731076 - 17731150
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||| || ||||||    
T  17731076 tcacaaagaaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaacaataaagaa 17731150  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 19032307 - 19032381
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||| || ||||||    
T  19032307 tcacaaagaaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaacaataaagaa 19032381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 3371522 - 3371407
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataagt-----taaagtgctactgactaatgcatctaaaaacaaagaacttaggtctttatatctaacc 277  Q
    |||||||||||||||||||| ||||| |||||||| |     |||||| ||| ||||| |||||||||||||||| |||| ||||| || |||| || ||    
T  3371522 tcacaaagcaaatatttaaattaagtcagatataaataagtttaaagttctattgactgatgcatctaaaaacaaggaacctaggt-ttaatatatagcc 3371424  T
Q  278 ttggtcttccctatgct 294  Q
    |||||||||||| ||||    
T  3371423 ttggtcttccctttgct 3371407  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 49582929 - 49582885
Alignment:
Q  27 ttgtgaagctgtgatggttagtaagaaacagggctgaagaagaaa 71  Q
    |||||||||| |||||||||||||| |||||||||||||||||||    
T  49582929 ttgtgaagctttgatggttagtaagtaacagggctgaagaagaaa 49582885  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 3372410 - 3372378
Alignment:
Q  184 cacaaagcaaatatttaaactaagttagatata 216  Q
    ||||||||||||||||||||||||| |||||||    
T  3372410 cacaaagcaaatatttaaactaagtcagatata 3372378  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 264
Target Start/End: Original strand, 7278017 - 7278144
Alignment:
Q  132 agacttctctcactctcactccaatgctccggtacaaccacactatcacaatcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctac 230  Q
    ||||||||||||||||||| |||||||||| |||||| || ||| ||||      |||||||||||||||||||||| ||||||||| ||||||||||||    
T  7278017 agacttctctcactctcaccccaatgctccagtacaatcatactctcac------aaagcaaatatttaaactaagtcagatataagcttaaagtgctac 7278110  T
Q  231 tgactaatgcatctaaaaacaaagaacttaggtc 264  Q
    |||||  |||||||| ||||||||||| ||||||    
T  7278111 tgactggtgcatctacaaacaaagaacctaggtc 7278144  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 392318 - 392392
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  392318 tcacaaagcaaatatttaaactaagtcagatataagcttaaagtgctactaactgatgtatctaaaaacaaagaa 392392  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 7284614 - 7284688
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||| |||| | |  ||| |||||||||||||||    
T  7284614 tcacaaaacaaatatttaaactaagtcagatataagtttaaagtggtactaattggtgcgtctaaaaacaaagaa 7284688  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 5448871 - 5448945
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  5448871 tcacaaagaaaatatttaaactaagttagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaa 5448945  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 5439861 - 5439932
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaa 253  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||  ||||||||||||||||    
T  5439861 tcacaaagaaaatatttaaactgagttagatataagcttaaagtgctactgactggtgcatctaaaaacaaa 5439932  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 5438868 - 5438942
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||||||| |||||  |||||||||||||||||||    
T  5438868 tcacaaaacaaatatttaaactaagttatatataagcttaaagtgctattgactggtgcatctaaaaacaaagaa 5438942  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 257
Target Start/End: Original strand, 15588619 - 15588739
Alignment:
Q  132 agacttctctcactctcactccaatgctccggtacaaccacactatcacaatcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctac 230  Q
    |||||||||||||||| || ||||||| || ||||||||| ||| ||||||      | |||||||||||||||||| | ||||||| |||| |||||||    
T  15588619 agacttctctcactcttaccccaatgccccagtacaaccaaactctcacaa------aacaaatatttaaactaagtcaaatataagcttaacgtgctac 15588712  T
Q  231 tgactaatgcatctaaaaacaaagaac 257  Q
    ||||   ||||||||||||||||||||    
T  15588713 tgacaggtgcatctaaaaacaaagaac 15588739  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 5447878 - 5447952
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||||||| |||||  ||||||||| |||||||||    
T  5447878 tcacaaaacaaatatttaaactaagttatatataagcttaaagtgctattgactggtgcatctaagaacaaagaa 5447952  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 15589801 - 15589873
Alignment:
Q  186 caaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaac 257  Q
    ||||||||||||| || |||||| ||||||||| |||| |||||||||||   |||||||||| |||||||||    
T  15589801 caaagcaaatattgaacctaagtaagatataagcttaatgtgctactgacctgtgcatctaaatacaaagaac 15589873  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 41341150 - 41341045
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaacttaggtctttatatctaaccttgg 281  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||  |||||||||||||||||||  ||||| || |||| |||| ||||    
T  41341150 tcacaaagcaaacatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggt-ttaatatataactttgg 41341052  T
Q  282 tcttccc 288  Q
    |||||||    
T  41341051 tcttccc 41341045  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 35428332 - 35428406
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||  |||||||||||||||||||    
T  35428332 tcacaaaacaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaa 35428406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 35429915 - 35429989
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||| |||||||||||||||    
T  35429915 tcacaaagcaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcttctaaaaacaaagaa 35429989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 7400477 - 7400558
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaacttaggt 263  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||   |||||||||||||||||||| |||||    
T  7400477 tcacaaaacaaatatttaaactaagtcagatataagcttaaagtgctactgaccggtgcatctaaaaacaaagaacctaggt 7400558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 18009307 - 18009237
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaa 252  Q
    |||||||| ||||||||||||||||| | ||||||| |||||||||||||||||  ||||| |||||||||    
T  18009307 tcacaaagaaaatatttaaactaagtcaaatataagtttaaagtgctactgactggtgcatttaaaaacaa 18009237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 30921629 - 30921676
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgcta 229  Q
    ||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  30921629 tcacaaagcaattatttaaactaacttagatataagtttaaagtgcta 30921676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 260
Target Start/End: Complemental strand, 32342238 - 32342117
Alignment:
Q  134 acttctctcactctcactccaatgctccggtacaaccacactatcacaatcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactg 232  Q
    ||||||||||||||||| | ||||| || ||||||||||||| ||||||      | |||||||||||||||||| ||||||||| |||||||| |||||    
T  32342238 acttctctcactctcacccgaatgccccagtacaaccacactctcacaa------aacaaatatttaaactaagtcagatataagcttaaagtgttactg 32342145  T
Q  233 actaatgcatctaaaaacaaagaactta 260  Q
    ||   |||||||||||||||||||||||    
T  32342144 accggtgcatctaaaaacaaagaactta 32342117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 14763838 - 14763912
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||  | |||||||||||||||||    
T  14763838 tcacaaagcaaatatttaaactaagtcagatacaagcttaaagtgctactgactggtacatctaaaaacaaagaa 14763912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 21118721 - 21118795
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    ||||||| | |||||||||||||||| ||||||||| |||||||||||||||||  |||||||||||||||||||    
T  21118721 tcacaaaactaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaa 21118795  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 14766415 - 14766486
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaa 253  Q
    |||||| ||||||||||||||||||| ||||| ||| ||||||||||| |||||| ||||||||||||||||    
T  14766415 tcacaatgcaaatatttaaactaagtcagatacaagcttaaagtgctattgactagtgcatctaaaaacaaa 14766486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 20727596 - 20727510
Alignment:
Q  178 cacaatcacaaagcaaatatttaaactaagttagatataagt-taaagtgctactgactaatgcatctaaaaacaaagaacttaggt 263  Q
    |||| |||||||| |||||||||| |||||| |||||||||  |||||||||| ||| || |||||||||||||||||||| |||||    
T  20727596 cacactcacaaagaaaatatttaatctaagtcagatataagcataaagtgctattgattagtgcatctaaaaacaaagaacataggt 20727510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 21118439 - 21118513
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    ||||||| | |||||||||||||||| ||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  21118439 tcacaaaactaatatttaaactaagtcagatataagcttaaagtgctattgactggtgcatctaaaaacaaagaa 21118513  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 6138307 - 6138233
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||  |||||| ||||||||||||    
T  6138307 tcacaaagcaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatcaaaaaacaaagaa 6138233  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 6139928 - 6139854
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || ||||   |||||||||||||||||||    
T  6139928 tcacaaagcaaatatttaaactaagttagatataagcttaaagtgttattgaccggtgcatctaaaaacaaagaa 6139854  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 43835068 - 43834986
Alignment:
Q  182 atcacaaagcaaatatttaaactaagttagatataagtt-aaagtgctactgactaatgcatctaaaaacaaagaacttaggt 263  Q
    |||||||| ||||||||||||| |||| |||| |||||| ||||||||||||||| |||||||| ||||| ||||||||||||    
T  43835068 atcacaaaacaaatatttaaaccaagtcagatgtaagtttaaagtgctactgactgatgcatcttaaaactaagaacttaggt 43834986  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 52022236 - 52022162
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    ||||||| |||||||||||||||||| |||||| || ||||||||||| |||||  |||||||||||||||||||    
T  52022236 tcacaaaacaaatatttaaactaagtcagatatgagcttaaagtgctaatgactggtgcatctaaaaacaaagaa 52022162  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 294
Target Start/End: Complemental strand, 5397497 - 5397346
Alignment:
Q  132 agacttctctcactctcactcc-aatgctccggtacaaccacactatcacaatcacaaagcaaatatttaaactaagttagatataag-ttaaagtgcta 229  Q
    ||||||||||||||||||| || ||||  ||||| |||||||||| ||||||      |  ||||||||||| ||||||||||||||| |||||||| ||    
T  5397497 agacttctctcactctcacgcccaatgtcccggtgcaaccacactctcacaa------aataaatatttaaattaagttagatataagcttaaagtgtta 5397404  T
Q  230 ctgactaatgcatctaaaaacaaagaacttaggtctttatatctaaccttggtcttccctatgct 294  Q
    |       |||||||||||||||||||| |||||| | |||| || |||||||||||||| ||||    
T  5397403 cg------tgcatctaaaaacaaagaacctaggtc-taatatatagccttggtcttccctttgct 5397346  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 288
Target Start/End: Complemental strand, 14508921 - 14508733
Alignment:
Q  94 caaataattattactatgtgaannnnnnnacgactcaaagacttctctcactctcactccaatgctccggtacaaccacactatcacaatcacaaagcaa 193  Q
    |||| |||||||||||||||||       || || || ||||||||||||||||||| |||  || |  ||||||||||||| ||||||      |||||    
T  14508921 caaagaattattactatgtgaatttttttacaacacatagacttctctcactctcaccccatggccctagtacaaccacactctcacaa------agcaa 14508828  T
Q  194 atatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaacttaggtctttatatctaaccttggtcttccc 288  Q
    |||||||||||| || ||||||||| |||||||||||||||||  | ||||||||||| |||||| ||||| |  |||| || |||||||||||||    
T  14508827 atatttaaactaggtcagatataagcttaaagtgctactgactggtacatctaaaaactaagaacctaggt-tcaatatatagccttggtcttccc 14508733  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 10550026 - 10550107
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaacttaggt 263  Q
    ||||||| |||||||||||||| ||| ||||||||  |||||||||||||||||  |||||||||||||||||||| |||||    
T  10550026 tcacaaaacaaatatttaaactgagtcagatataaacttaaagtgctactgactggtgcatctaaaaacaaagaacctaggt 10550107  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 31322685 - 31322582
Alignment:
Q  184 cacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaacttaggtctttatatctaaccttggt 282  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||||| | ||| |  |||||||||||||||||||| ||||||   |||| ||||||||||    
T  31322685 cacaaagaaaatatttaaactaagtcagatataagcttaaagtgccattgaatggtgcatctaaaaacaaagaacctaggtc-caatatataaccttggt 31322587  T
Q  283 cttcc 287  Q
    |||||    
T  31322586 cttcc 31322582  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 257
Target Start/End: Original strand, 41848309 - 41848429
Alignment:
Q  132 agacttctctcactctcactccaatgctccggtacaaccacactatcacaatcacaaagcaaatatttaaactaagttagatataagttaaag-tgctac 230  Q
    ||||||||||||||||  | |||||| ||| ||||||||||||| ||| ||      | |||||||||||||||| | ||||||||| ||||  ||||||    
T  41848309 agacttctctcactctagccccaatgttccagtacaaccacactttcataa------aacaaatatttaaactaaatcagatataagctaaaaatgctac 41848402  T
Q  231 tgactaatgcatctaaaaacaaagaac 257  Q
    ||||| |||||||||||||||||||||    
T  41848403 tgactgatgcatctaaaaacaaagaac 41848429  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 31073691 - 31073744
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgact 235  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  31073691 tcacaaaacaaatatttaaactaagttagatataagtttaaaatgctactgact 31073744  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 4660118 - 4660191
Alignment:
Q  183 tcacaaagcaaatatttaaactaagttagatataa-gttaaagtgctactgactaatgcatctaaaaacaaagaa 256  Q
    ||||||| |||||||||||||||||| ||||||||  ||||||||||||||||   |||||| ||||||||||||    
T  4660118 tcacaaaccaaatatttaaactaagtcagatataatcttaaagtgctactgaccggtgcatc-aaaaacaaagaa 4660191  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 263
Target Start/End: Complemental strand, 20594771 - 20594648
Alignment:
Q  135 cttctctcactctcactccaatgctccggtacaaccacactatcacaatcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactga 233  Q
    ||||||||| |||||| ||||| |||| ||||||||||||| ||||||      | ||||||||||||||| || ||||||||| ||| |||| || |||    
T  20594771 cttctctcattctcaccccaatcctccagtacaaccacactctcacaa------aacaaatatttaaactatgtcagatataagcttagagtgttattga 20594678  T
Q  234 ctaatgcatctaaaaacaaagaacttaggt 263  Q
    |   |||||||||||| ||||||| |||||    
T  20594677 ccggtgcatctaaaaataaagaacctaggt 20594648  T

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