View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_low_19 (Length: 282)
Name: NF20050_low_19
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 28746993 - 28747215
Alignment:
| Q |
16 |
atacggaggaggatatacagaatctttgagagcaaaatactcatttccgacgaacatgcaaagagcaggggcgtaaggtttctgaaattcaccaggtaaa |
115 |
Q |
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| T |
28746993 |
atacggaggaggatatacagaatctttgagagcaaaatactcatttccgatgaacatgcaaagagcaggggcgtaaggtttctgaaattcaccaggtaaa |
28747092 |
T |
|
| Q |
116 |
gcttccaaactgaaattcatagaattctaacactgcatcttcttaaatgttcactatcatagatcannnnnnnngtttaatcttttctatttcttgtgaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28747093 |
gcttccaaactgaaattcatagaattctaacactgcatcttcttaaatgttcactatcatagatcaatttttttgtttaatcttttctatttcttgtgaa |
28747192 |
T |
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| Q |
216 |
agaaggctaagatatagtaaacc |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
28747193 |
agaaggctaagatatagtaaacc |
28747215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 28747260 - 28747292
Alignment:
| Q |
236 |
acccactaagaagtttttctgtttcgaatttat |
268 |
Q |
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| T |
28747260 |
acccactaagaagtttttctgtttcgaatttat |
28747292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 28281208 - 28281104
Alignment:
| Q |
19 |
cggaggaggatatacagaatctttgagagcaaaatactcatttccgacgaacatgcaaagagcaggggcgtaaggtttctgaaattcaccaggtaaagct |
118 |
Q |
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| T |
28281208 |
cggaggaggatatacagaatctttgaaagcaaaatactcatttccaacgaacatgcaaagagccagggcgtacgatttctgaaattcatcaggtaaagct |
28281109 |
T |
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| Q |
119 |
tccaa |
123 |
Q |
| |
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||||| |
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| T |
28281108 |
tccaa |
28281104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 28289316 - 28289215
Alignment:
| Q |
22 |
aggaggatatacagaatctttgagagcaaaatactcatttccgacgaacatgcaaagagcaggggcgtaaggtttctgaaattcaccaggtaaagcttcc |
121 |
Q |
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|||||||||||| |||||||||| ||| ||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
28289316 |
aggaggatatacggaatctttgaaagcgaaaatctcattttggacgaacatgcaaagagccggggcgtaaggtttctgaaattcaccaggtaatgcttcc |
28289217 |
T |
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| Q |
122 |
aa |
123 |
Q |
| |
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|| |
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| T |
28289216 |
aa |
28289215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 28300024 - 28299995
Alignment:
| Q |
94 |
tttctgaaattcaccaggtaaagcttccaa |
123 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28300024 |
tttctgaaattcaccaggtaaagcttccaa |
28299995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 24729407 - 24729321
Alignment:
| Q |
20 |
ggaggaggatatacagaatctttgagagcaaaatactcatttccgacgaacatgcaaagagcaggggcgtaaggtttctgaaattca |
106 |
Q |
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||||||||||||||||||||||||| || |||| ||||||||| ||| |||||||||||||||||| ||||| ||||||||||||| |
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| T |
24729407 |
ggaggaggatatacagaatctttgaaagaaaaaaactcatttctgacaaacatgcaaagagcagggaagtaagatttctgaaattca |
24729321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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