View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_low_28 (Length: 236)
Name: NF20050_low_28
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 39544744 - 39544537
Alignment:
| Q |
16 |
atattgacgtgaatgaaaataataacctttatattggtgaatcaaaccctacttacccgaaaacaagtttcagaaaaagctccaaagtaacaagtcaatc |
115 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544744 |
atattgacgtgaatgaaaataacaacctttatattggtgaatcaaaccctacttacccaaaaacaagtttcagaaaaagctccaaagtaacaagtcaatc |
39544645 |
T |
|
| Q |
116 |
accagtgtcttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtacgtttc |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39544644 |
accagtgttttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtatgtttc |
39544545 |
T |
|
| Q |
216 |
cgtttctt |
223 |
Q |
| |
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| |||||| |
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|
| T |
39544544 |
catttctt |
39544537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 39521954 - 39521744
Alignment:
| Q |
16 |
atattgacgtgaatgaaaataataacctttatattggtgaatcaaaccctacttacccgaaaacaagtttcagaaaaag---ctccaaagtaacaagtca |
112 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| | ||||| |||| |||||||||||||||||| |
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| T |
39521954 |
atatcgacgtgaatgaaaataacaacctttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaaagtaacaagtca |
39521855 |
T |
|
| Q |
113 |
atcaccagtgtcttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtacgt |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || |||| |||| | |||||||||||||| ||| | |||| |||||| |||||||||||| |
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| T |
39521854 |
atcaccagtgtcttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaagcaacacttacatggtacgt |
39521755 |
T |
|
| Q |
213 |
ttccgtttctt |
223 |
Q |
| |
|
|||| |||||| |
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| T |
39521754 |
ttccatttctt |
39521744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 39525435 - 39525241
Alignment:
| Q |
29 |
tgaaaataataacctttatattggtgaatcaaaccctacttacccgaaaacaagtttcagaaaaagctccaaagtaacaagtcaatcaccagtgtcttca |
128 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||| | ||||| |||||||||||||| |||||||||| || ||| ||||||||| ||||| ||||| |
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|
| T |
39525435 |
tgaaagtaataaagtttatattggggaatcaaaccccaactaccctaaaacaagtttcagcaaaagctccatagaaaccagtcaatcatcagtgccttca |
39525336 |
T |
|
| Q |
129 |
cctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtacgtttccgtttctt |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| || || || ||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
39525335 |
cctctctaccaaacagcaaggatatttcattccgaatctttatacgagttcaaaaccgtaccaaacaacacctacatggtacgtttccatttctt |
39525241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 39576599 - 39576389
Alignment:
| Q |
16 |
atattgacgtgaatgaaaataataacctttatattggtgaatcaaaccctacttacccgaaaacaagtttcag---aaaaagctccaaagtaacaagtca |
112 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||||||| | ||||||| |||| | ||||| || ||| |||| || ||| | || |
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|
| T |
39576599 |
atatcgacgtgaatgaaaataagaatctttatattggtgaatcaaaccatgcttaccctaaaaaatcattcagccaaagaagttccatagaaaccaatcc |
39576500 |
T |
|
| Q |
113 |
atcaccagtgtcttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtacgt |
212 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| || |||||||| || || ||||| |||||||||||||||||||||||||| || ||||||||| |
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|
| T |
39576499 |
atcatcagtgtcttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccataccaaacaacacttatatggtacgt |
39576400 |
T |
|
| Q |
213 |
ttccgtttctt |
223 |
Q |
| |
|
||||||||||| |
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|
| T |
39576399 |
ttccgtttctt |
39576389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 39581124 - 39580918
Alignment:
| Q |
29 |
tgaaaataataacctttatattggtgaatcaaaccctacttacccgaaaacaagtttcagaaaaagctccaaagtaacaagtca---atcaccagtgtc- |
124 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||| |||| || | || |
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|
| T |
39581124 |
tgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaagctccaaagtaacaagtcaatcatcatcactatca |
39581025 |
T |
|
| Q |
125 |
--------ttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtacgtttcc |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| | |||| ||| ||||| ||| ||||||||||||| |||||||||||||||| |
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|
| T |
39581024 |
acaccactttcacctctctaccaaacagcaattatattcccttccaaatctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttcc |
39580925 |
T |
|
| Q |
217 |
gtttctt |
223 |
Q |
| |
|
|||||| |
|
|
| T |
39580924 |
atttctt |
39580918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 39511653 - 39511500
Alignment:
| Q |
68 |
ttacccgaaaacaagtttcagaaaaagctccaaagtaacaagtcaatcaccagtgtcttcacctctctaccaaacagcaaggatattccattccgagtct |
167 |
Q |
| |
|
|||||| | |||||||||||| |||||||||| || ||||| ||||||| |||| ||||| ||||||||||||| |||||||| |||| |||||| ||| |
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|
| T |
39511653 |
ttaccctataacaagtttcagcaaaagctccatagaaacaaatcaatcatcagttccttcatctctctaccaaactgcaaggattttccgttccgaatct |
39511554 |
T |
|
| Q |
168 |
tcctatgaattttctaccataccaaacaacacctacatggtacgtttccgtttc |
221 |
Q |
| |
|
| || ||||| ||||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
39511553 |
tggtacgaattcaaaaccatcccaaacaacacctatatggtacgtttccatttc |
39511500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 3331399 - 3331541
Alignment:
| Q |
77 |
aacaagtttcagaaaaagctccaaagtaacaagtcaatcaccagtgtcttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaa |
176 |
Q |
| |
|
|||||||||||| ||||||||| || ||||| ||||| | |||| |||||||||| ||||||| |||||| || |||||||| || |||| || | |
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|
| T |
3331399 |
aacaagtttcagcaaaagctccgtagaaacaaatcaataatcagttccttcacctctttaccaaagagcaagaattttccattctgaatcttggta--ga |
3331496 |
T |
|
| Q |
177 |
ttttctaccataccaaacaacacctacatggtacgtttccgtttc |
221 |
Q |
| |
|
|| ||| || |||||||||||||||||||||||||||| |||| |
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|
| T |
3331497 |
ttcactattatcccaaacaacacctacatggtacgtttccatttc |
3331541 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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