View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_low_4 (Length: 669)
Name: NF20050_low_4
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_low_4 |
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| [»] scaffold0499 (1 HSPs) |
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Alignment Details
Target: scaffold0499 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 282 - 572
Target Start/End: Complemental strand, 2837 - 2547
Alignment:
| Q |
282 |
tatgagatagagcactagtaggttgttaaccttttcttatcctataagttttcttttgtttcaacactaacttagtatatgatacaaaattnnnnnnnca |
381 |
Q |
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| T |
2837 |
tatgagatagagcaccagtaggttgttgatctttttttatcctataagttttctcttgtttcaaaactaacttagaaaatgatacaaaattaaaaaaaca |
2738 |
T |
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| Q |
382 |
caaaactcaaattacatttgaaccttaacttacatgcaacgggtgcagttgcaaatgcctgtacagtttgaaattatatatcattcatcaagtctacata |
481 |
Q |
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| T |
2737 |
caaaactcaaattacatttgaaccctaacttacatgcaacggctgcagttgcaaatgcctgtacagtttgaaattatatatcattcatcaagtctacata |
2638 |
T |
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| Q |
482 |
ttttgtctttcgccatatctgaactcaacacacaaaaatcgttgtcttttaaaaaagcatacaataaattagtctaccattatactcttgg |
572 |
Q |
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| T |
2637 |
ttttgtctttcgccatatctgaactcaacacacaaaaatcattgtcttttaaaaaagcacacaataaaatagtctaccattatactcttgg |
2547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 13204998 - 13204818
Alignment:
| Q |
24 |
aatatgaaatataacacattcttgcacttgttatcattagtttgatctgaatacatggagacaagccttattaatcatgatacaaagtgaacttattgtg |
123 |
Q |
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| T |
13204998 |
aatattaaatataaaacatttttgctcctatcatcattagtttgaattgaatacttgaaggcaagccttaataatcatgaaacaaagtgaacttattgtg |
13204899 |
T |
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| Q |
124 |
ttcaatacataaaatggatgaaaagtaacacacctttttcaaggtagattcccttggagagacaatagcagtattattaac |
204 |
Q |
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| T |
13204898 |
ttaaatacataaaataggtgaaaactaacacacctttttcaaagtagattcctttgcagacacaatagcaatatgattaac |
13204818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 56 - 210
Target Start/End: Complemental strand, 13178889 - 13178734
Alignment:
| Q |
56 |
atcattagtttgatctgaatacatggagacaagccttattaatcatgatacaaagtgaacttattgtgttcaatacataaaatggatgaaaagtaacaca |
155 |
Q |
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| T |
13178889 |
atcattagtttgaattgcatacatgaggacaagccttaataatcacgaaacaatttgaacttcttatgttaaatacataaaatgtgtgaaaggtaaccca |
13178790 |
T |
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| Q |
156 |
cc-tttttcaaggtagattcccttggagagacaatagcagtattattaactttgtt |
210 |
Q |
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| T |
13178789 |
ccttttttcaaagtagattcctttggagacacaatagcaatatgattaaccttgtt |
13178734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 9943893 - 9944040
Alignment:
| Q |
75 |
tacatggagacaagccttattaatcatgatacaaagtgaacttattgtgttcaatacataaaatggatgaaaagtaacacacctttttcaaggtagattc |
174 |
Q |
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| T |
9943893 |
tacatgaagtcaaaccttaataagcatgaaacaaagtgaacttattaggttaaatacataaaatgggcgaaaagtaacaca--tttttcaaagtagattc |
9943990 |
T |
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| Q |
175 |
ccttggagagacaatagcagtattattaactttgtttagttctatatctt |
224 |
Q |
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| T |
9943991 |
ctttgaagacaaagtagtagtattatcaaccttgttcagttctaaatctt |
9944040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 13203909 - 13203832
Alignment:
| Q |
127 |
aatacataaaatggatgaaaagtaacacacctttttcaaggtagattcccttggagagacaatagcagtattattaac |
204 |
Q |
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| T |
13203909 |
aatacatagaatgggtgaaaggtaacacacctttttcaaagtagattcctttggagacacaatagcaatatgattaac |
13203832 |
T |
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