View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_low_5 (Length: 585)
Name: NF20050_low_5
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 43568127 - 43568699
Alignment:
| Q |
1 |
atcgttccaaccctttctccaacttcaacatttctgtgaatcctgcaggctcctagcaatgctcc----ccatactggagcatttggttttataggcatt |
96 |
Q |
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| T |
43568127 |
atcgttccaaccctttctccaacttcaacatttctgtgaatcctgcaggctcctagcaatgctccctccccatactggagcatttggttttataggcatt |
43568226 |
T |
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| Q |
97 |
tcaagaataaaattctccgcctcttccaactttcctgcccttccaagaagatcaaccatacatccataatgttccaatctcggctctaacctataatccc |
196 |
Q |
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| T |
43568227 |
tcaagaataaaattctccgcctcttccaactttcctgcccttccaagaagatcaaccatacatccataatgttccaatctcggctctaacctataatccc |
43568326 |
T |
|
| Q |
197 |
ttttcatgctttcaaatatttcttgacccttttctaccagccctccatgactataagctttcaaaaccgctgtaaaagtaatatctctaggaactatccc |
296 |
Q |
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| T |
43568327 |
ttttcatgctttcaaatatttcttgacccttttctaccagccctccatgactataagctttcaaaaccgctgtaaaagtaatatctctaggaactatccc |
43568426 |
T |
|
| Q |
297 |
atttttcaccattacataaaaatactcaagcgcttcctctgcataaccatgcatagctactccagaaatcaaacttgtccaactaattacatccttctct |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43568427 |
atttttcaccattacataaaaatactcaagcgcttcctctgcataaccatgcatagctactccagaaatcaaacttgtccaactaattacatccttctct |
43568526 |
T |
|
| Q |
397 |
ttcatttccttgaaaacccggacagctttctcaacattaccacatcttgcatacatatcaacgatcgccgtcccaagaatcacattcaaatccaaattaa |
496 |
Q |
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| T |
43568527 |
ttcatttcctcgaaaacccggacagctttctcaacattcccacatcttgcatacatatcaacgatcgccgtcccaagaatcacattcaaatccaaattaa |
43568626 |
T |
|
| Q |
497 |
ttctaatcgcatgctcataagctttctccccagccgcaagagcacctaaatgagcacaagcagataccgcacc |
569 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43568627 |
ttctaatcgcatgctcataagctttctccccagccgcaagagcacctaaatgagcacaagcagataccgcacc |
43568699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 28405603 - 28405564
Alignment:
| Q |
133 |
gcccttccaagaagatcaaccatacatccataatgttcca |
172 |
Q |
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| T |
28405603 |
gcccttccaagaaggtcaaccatacaaccataatgttcca |
28405564 |
T |
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