View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20050_low_7 (Length: 504)
Name: NF20050_low_7
Description: NF20050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20050_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 487
Target Start/End: Complemental strand, 43205290 - 43204804
Alignment:
| Q |
13 |
cagagaagccacacctacttcatagaggaatcattaaacctgttgtcgaagttgataacgcgccacatgttgaaatcacaatccaagatttatgtacaaa |
112 |
Q |
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| T |
43205290 |
cagagaagccacacctacttcatagaggaatcattaaacctgttgtcgaagttgataacgcgtcacatgttgaaatcacaatccaagatttatgtacaaa |
43205191 |
T |
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| Q |
113 |
cccgccagaaaaaactcgaaaaggcaccgcggaaatccttcaaacataactataa----------------------tgacactggatagtaatttgtca |
190 |
Q |
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| T |
43205190 |
cccgccagaaaaaactcgaaaaggcaccgcggaaatccttcaaacataactataaatttaaatagttgtcactataatgacactgggtagtaatttgtca |
43205091 |
T |
|
| Q |
191 |
cgaaatccggctgcctcaagtcacaattttcatgcatccacgtagttagtaattatgagtcgttaagtcaatatttaaatgaccatgaatatttgctgat |
290 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43205090 |
cgaaatccggctgcctcaagtcacaattttcatacatccacgtagttagtaattatgagtcgttaagtcaatatttaaatgaccatgaatatttgctgat |
43204991 |
T |
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| Q |
291 |
ttgcgtaaatgcatgaaaattgtgaccatagagaatcgagatttcacttaattactttattattacttagttgagtaaatagtctccaacttcattttac |
390 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43204990 |
atgtgtaaatgcatgaaaattgtgaccatagagaatcgatatttcacttaattactttattattacttagttgagtaaatagtctcaaacttca------ |
43204897 |
T |
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| Q |
391 |
aatttgtaaaattaattaaggtgagaatctttttcatattcttgccttaatttaatttcttttgatgtgtgttctatagtgtaacaagagttatgct |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43204896 |
----tgtaaaattaattaaggtgagaatctttttcatattctagccttaatttaatttcttttgatgtgtgttctatagtgtaacaagagttatgct |
43204804 |
T |
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