View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20051_high_2 (Length: 429)
Name: NF20051_high_2
Description: NF20051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20051_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 71 - 418
Target Start/End: Original strand, 10465358 - 10465705
Alignment:
| Q |
71 |
taaaaagaaataatgacagtgaagtctgactaagtcgttacgtcccacactataaaatata-ggttaaatatatttttgatctgtataaatattaaatat |
169 |
Q |
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|||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||| |
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| T |
10465358 |
taaaaagaaagaatgatagtgaagtttgactaaatcgttacgtcccacactataaaatataaggttaaatataattttaatttgtataaatattaaatat |
10465457 |
T |
|
| Q |
170 |
acaaatttttcgttttagtcatttt-aaaaaatttattcgaatcaaagttagcagcctcttacaactaacggggtttaaatttagcagcctcctacaatc |
268 |
Q |
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|||||||||| |||||| ||||||| ||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
10465458 |
acaaattttttgttttaatcatttttaaaaaatttcttcaaatcaaagttagcagcctcctacaaccaacggggtttaaatttagcagcctcctacaatc |
10465557 |
T |
|
| Q |
269 |
taaacgaatcaaagttctaa------ggatggtgttagctatcccaannnnnnnnnnnnnnnaataagtaatggatttttatgtttagttacactaataa |
362 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10465558 |
taaacgaatcaaagttctaattatgcggatggtgttagctatcccaa--------tttttttaataagtaatggatttttatgtttagttacactaataa |
10465649 |
T |
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| Q |
363 |
tgtggatttagctatccaatattaattactttataaaaataatggttaaatatatt |
418 |
Q |
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| T |
10465650 |
tgtggatttagctatccaagattaattactttataaaaataagggttaaatatatt |
10465705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 27581901 - 27581861
Alignment:
| Q |
163 |
taaatatacaaatttttcgttttagtcattttaaaaaattt |
203 |
Q |
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| T |
27581901 |
taaatatacaaacttttcgttttagtccttttaaaaaattt |
27581861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 38892067 - 38892027
Alignment:
| Q |
163 |
taaatatacaaatttttcgttttagtcattttaaaaaattt |
203 |
Q |
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|||||||| || |||||||||||||||||||||||||||| |
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| T |
38892067 |
taaatatattaacttttcgttttagtcattttaaaaaattt |
38892027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 48608076 - 48608030
Alignment:
| Q |
163 |
taaatatacaaatttttcgttttagtcattttaaaaaatttattcga |
209 |
Q |
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||||||||| | |||||||||||| ||||||||||||| |||||||| |
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| T |
48608076 |
taaatatactagtttttcgttttaatcattttaaaaaaattattcga |
48608030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 43301477 - 43301545
Alignment:
| Q |
129 |
ataggttaaatatatttttgatctgtataaatattaaatatacaaatttttcgttttagtcattttaaaa |
198 |
Q |
| |
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| T |
43301477 |
ataggttaaatatgtttttgatccctataaata-taaatatatgaacttttcgttttagtccctttaaaa |
43301545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 26468175 - 26468138
Alignment:
| Q |
163 |
taaatatacaaatttttcgttttagtcattttaaaaaa |
200 |
Q |
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| T |
26468175 |
taaatatataaatttttcgttttagtcattataaaaaa |
26468138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 22653197 - 22653157
Alignment:
| Q |
163 |
taaatatacaaatttttcgttttagtcattttaaaaaattt |
203 |
Q |
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||||||| ||||||||||||||||||||| |||||||||| |
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| T |
22653197 |
taaatatgaaaatttttcgttttagtcattctaaaaaattt |
22653157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 54060298 - 54060331
Alignment:
| Q |
176 |
ttttcgttttagtcattttaaaaaatttattcga |
209 |
Q |
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||||| |||||||||||||||||||||||||||| |
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|
| T |
54060298 |
ttttctttttagtcattttaaaaaatttattcga |
54060331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 52021579 - 52021539
Alignment:
| Q |
163 |
taaatatacaaatttttcgttttagtcattttaaaaaattt |
203 |
Q |
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|||||||| ||||||||||||||||||||| ||||| |||| |
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| T |
52021579 |
taaatatataaatttttcgttttagtcattctaaaacattt |
52021539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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