View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20051_high_4 (Length: 383)
Name: NF20051_high_4
Description: NF20051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20051_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 368
Target Start/End: Complemental strand, 1470858 - 1470496
Alignment:
| Q |
13 |
actagtctatattttcgaagaagat---caagtggtcctgtaattctataaataagatatgtgtttacaattacaagaatggtactgtaaagattcctgg |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1470858 |
actagtctatattttcgaagaagatgaccaagtggtcctggaattctataa-taagatatgtgtttacaattacaaggatggtactgtaaagattcctgg |
1470760 |
T |
|
| Q |
110 |
gattcaaggcttattttctactatgttcagctccaatgtctacattgaaagtctcgtatcgccttgacctagatgctttgctatgctatgttggctctcg |
209 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1470759 |
gattcaaggcttattttctacgatgttcagctccaatgtctacattgaaagtctcgtatcgccttgacctagatgctttgctatgctatgttggctctcg |
1470660 |
T |
|
| Q |
210 |
aagatt-----ctccgatcatgtgtcttttgttatgtcatttattttatgttggttctaatttctgatgttcactttatagttccatgttaattaatggt |
304 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1470659 |
aagattatattctccgatcatgtgtcttttgttatgtcatttattttatgttggttctaatttctgatgttcactttatagttccatgttaattaatggt |
1470560 |
T |
|
| Q |
305 |
cattgtaataataactttataattttcttttaaagttttatgtgctcacttttatgattctctt |
368 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1470559 |
cattgtaataataactttatatttttcttttaaatttttatgtgctcacttttatgattctctt |
1470496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 29 - 368
Target Start/End: Complemental strand, 1459460 - 1459128
Alignment:
| Q |
29 |
gaagaagatcaagtggtcctgtaattctataaataagatatgtgtttacaattacaagaatggtactgtaaagattcctgggattcaaggcttattttct |
128 |
Q |
| |
|
||||| || ||||||||||| | |||||||| |||||||| ||||||||||||||||||| ||| | ||||||||||| |||||| || || | |
|
|
| T |
1459460 |
gaagatgaccaagtggtcctagatttctataa-taagatatatgtttacaattacaagaatcgtatttcaaagattcctgagattcatggttt------t |
1459368 |
T |
|
| Q |
129 |
actatgttcagctccaatgtctacattgaaagtctcgtatcgccttgacctagatgctttgctatgctatgttggctctcgaagattctccgatcatgtg |
228 |
Q |
| |
|
|||| ||| | || ||||||||| || |||||| |||| |||||||||| || |||||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
1459367 |
actaggtttacttctaatgtctacgcagagagtctcatatcaccttgacctacattatttgctgtgctatgttggctctcgaagattctcctctcaagtg |
1459268 |
T |
|
| Q |
229 |
tcttttgttatgtcatttattttatgttggttctaatttct-gatgttcactttatagttccatgttaattaatggtcattgtaataataactttataat |
327 |
Q |
| |
|
| |||||||||| |||||||||||||||||||| ||| | |||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
1459267 |
t--tttgttatgttgtttattttatgttggttctagttttttgatgttgactttctagttccatgttaattaatgttcattataataataactttatatt |
1459170 |
T |
|
| Q |
328 |
tttcttttaa-agttttatgtgctcacttttatgattctctt |
368 |
Q |
| |
|
||||| | || ||||| ||||||||| || |||||||||||| |
|
|
| T |
1459169 |
tttctctcaagagtttcatgtgctcatttatatgattctctt |
1459128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 364
Target Start/End: Complemental strand, 370524 - 370397
Alignment:
| Q |
239 |
tgtcatttattttatgttggttcta-atttctgatgttcactttatagttccatgttaattaatggtcattgtaataataactttataattttcttttaa |
337 |
Q |
| |
|
|||||||||||||| |||||||| | | || || || | |||||||| |||||| ||| || |||||| |||||||||||||||| || ||||| |||| |
|
|
| T |
370524 |
tgtcatttattttacgttggttcgatagttttggtgctgactttatatttccatattagctagtggtcaatgtaataataactttagaaatttctcttaa |
370425 |
T |
|
| Q |
338 |
-agttttatgtgctcacttttatgattc |
364 |
Q |
| |
|
||||| ||||||||| |||| |||||| |
|
|
| T |
370424 |
gagtttcatgtgctcatttttctgattc |
370397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 7564656 - 7564602
Alignment:
| Q |
62 |
taagatatgtgtttacaattacaagaatggtactgtaaagattcctgggattcaa |
116 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||| ||||||||| | ||||||||| |
|
|
| T |
7564656 |
taagttatatgtttacaattataagaatggtaccgtaaagatttcggggattcaa |
7564602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 1453730 - 1453682
Alignment:
| Q |
71 |
tgtttacaattacaagaatggtactgtaaagattcctgggattcaaggc |
119 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
1453730 |
tgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggc |
1453682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 1465422 - 1465374
Alignment:
| Q |
71 |
tgtttacaattacaagaatggtactgtaaagattcctgggattcaaggc |
119 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
1465422 |
tgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggc |
1465374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 55420123 - 55420209
Alignment:
| Q |
236 |
ttatgtcatttattttatgttggttctaatttctgatgttcactttatagttccatgttaattaatggtcattgtaataataacttta |
323 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| || || | ||||||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
55420123 |
ttatgtcatttattttatgctggttctagtttttg-tgctgcctttatagttccatgttaacaagtggtcaatgtaataataacttta |
55420209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 55419942 - 55419988
Alignment:
| Q |
73 |
tttacaattacaagaatggtactgtaaagattcctgggattcaaggc |
119 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
55419942 |
tttacaattataagaatggtaatgtaaagattcctgacattcaaggc |
55419988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University