View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20051_high_7 (Length: 260)
Name: NF20051_high_7
Description: NF20051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20051_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 42552092 - 42551867
Alignment:
| Q |
15 |
aaaattcaaatttaattagtaacaagtaaactttacagttcaatatagtgtgtatgtatgtattgcaaataattttgttaaacaaacctgacaaatgaac |
114 |
Q |
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| T |
42552092 |
aaaattcaaatttaattagtaacaagtaaactttacagttcaatatagtgtgtatgtatgtattgcaaataattttgttaaacaaacctgacaaatgaac |
42551993 |
T |
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| Q |
115 |
atttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattgaaacaagagtggcgagtgcattacaacctccaataatta |
214 |
Q |
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| T |
42551992 |
atttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattgaaacaagagtggcgagtgcattacaacctccaataatta |
42551893 |
T |
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| Q |
215 |
aggctgacacgagagaagcagtgtta |
240 |
Q |
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| T |
42551892 |
aggctgacacgagagaagcagtgtta |
42551867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 42518048 - 42518125
Alignment:
| Q |
100 |
acctgacaaatgaacatttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattgaa |
177 |
Q |
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| T |
42518048 |
acctgacaaataaacatttgagctcctccttctaagaatagagtacgtctcccaaacttatcaacagtggcaattgaa |
42518125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 18234198 - 18234335
Alignment:
| Q |
96 |
acaaacctgacaaatgaacatttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattgaaacaagagtggcgagtgca |
195 |
Q |
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| T |
18234198 |
acaaacctgacaaataaacatttgaataccgccttctatgaaaagagttcttcttccaaatttatcaacagtggcgattgatacgaaagtggcaagtgcg |
18234297 |
T |
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| Q |
196 |
ttacaacctccaataattaaggctgacacgagagaagc |
233 |
Q |
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| T |
18234298 |
ttacatcctccggtaatcagggctgacatgagagaagc |
18234335 |
T |
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