View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20051_high_9 (Length: 227)
Name: NF20051_high_9
Description: NF20051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20051_high_9 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 3302171 - 3301950
Alignment:
| Q |
6 |
agaatttacctaatttgtttaggctgaatttgtgggatgatgccttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagtt |
105 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3302171 |
agaatttacctagtttgttgaggctgaatttgtgggatgatgccttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagtt |
3302072 |
T |
|
| Q |
106 |
ggatctcacaagattaaataaactaagttctatatctatagacaaagatgctttagttaatcttgaacacttcagatttaaaaacaaccctcaattgaag |
205 |
Q |
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||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3302071 |
ggatctcacaagattaagtaaactaagttctatatctatacacgaagatgctttagttaatcttgaacacttcagatttaaaaacaatcctcaattgaag |
3301972 |
T |
|
| Q |
206 |
gttgtaccagaagacctccaaa |
227 |
Q |
| |
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||| |||| |||||||||||| |
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| T |
3301971 |
gttttaccgcaagacctccaaa |
3301950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 3308856 - 3308635
Alignment:
| Q |
6 |
agaatttacctaatttgtttaggctgaatttgtgggatgatgccttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagtt |
105 |
Q |
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|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| | | |||||| ||| |||||||||||| |||||||||||||| |
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| T |
3308856 |
agaatttaactagtttatttaggctgaatttgtgggatgatgccttttctggtgaaagattacattttcagagaggagggtttccgaagctgaaggagtt |
3308757 |
T |
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| Q |
106 |
ggatctcacaagattaaataaactaagttctatatctatagacaaagatgctttagttaatcttgaacacttcagatttaaaaacaaccctcaattgaag |
205 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
3308756 |
ggaactcacaagattaaatagactaagttctatatctatagacgaagatgctttagttaatcttgaacacttcagatttaaaaacaatcctcagttgaag |
3308657 |
T |
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| Q |
206 |
gttgtaccagaagacctccaaa |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
3308656 |
gttgtaccagaagacctccaaa |
3308635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 3215463 - 3215680
Alignment:
| Q |
10 |
tttacctaatttgtttaggctgaatttgtgggatgatgccttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagttggat |
109 |
Q |
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||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215463 |
tttacctaatttgttgaggctgaatttatgggatgatgctttttctggtgaaagattgcattttaagaaaggagggtttccaaagctgaaggagttggat |
3215562 |
T |
|
| Q |
110 |
ctcacaagattaaataaactaagttctatatctatagacaaagatgctttagttaatcttgaacacttcagatttaaaaacaaccctcaattgaaggttg |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
3215563 |
ctcacaagattaaatagactaagttctatatctatagacgaagaagctttagttgatctcgaacacttcagatttagaaacaaccctcaattgaaggttt |
3215662 |
T |
|
| Q |
210 |
taccagaagacctccaaa |
227 |
Q |
| |
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|||| | |||||||||| |
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| T |
3215663 |
taccccatgacctccaaa |
3215680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 3320455 - 3320339
Alignment:
| Q |
6 |
agaatttacctaatttgtttaggctgaatttgtgggatgatgccttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagtt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3320455 |
agaatttacctaatttgtttaggctgaatttgtgggatgatgccttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagtt |
3320356 |
T |
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| Q |
106 |
ggatctcacaagattaa |
122 |
Q |
| |
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||||||||||||||||| |
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| T |
3320355 |
ggatctcacaagattaa |
3320339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 3202844 - 3203045
Alignment:
| Q |
6 |
agaatttacctaatttgtttaggctgaatttgtgggatgatgccttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagtt |
105 |
Q |
| |
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||||||| || |||||||| ||| ||||||||||||| ||||| ||||||||||| | | |||||| ||||||||||| |||||||||||||| |
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| T |
3202844 |
agaatttgccaaatttgttgaggttgaatttgtgggacgatgcattttctggtgatagtttacatttttcagttggagggtttcctaagctgaaggagtt |
3202943 |
T |
|
| Q |
106 |
ggatctcacaagattaaataaactaagttctatatctatagacaaagatgctttagttaatcttgaacacttcagatttaaaaacaaccctcaattgaag |
205 |
Q |
| |
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|||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
3202944 |
ggatctcacaagattaaatagactaagttttgtatctatagacaaagatgctttagttgatcttgaacacttcagatttaacaacaaccctcaattgaag |
3203043 |
T |
|
| Q |
206 |
gt |
207 |
Q |
| |
|
|| |
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|
| T |
3203044 |
gt |
3203045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 3196594 - 3196393
Alignment:
| Q |
6 |
agaatttacctaatttgtttaggctgaatttgtgggatgatgccttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagtt |
105 |
Q |
| |
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||||||| || |||||| | ||||| | ||||||||||||||| ||| ||||||||| |||||||| | ||||||||||||| | ||| |||||||| |
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| T |
3196594 |
agaatttgccaaatttgatgaggcttattttgtgggatgatgcatttgctggtgaaagtttgcattttcaagaaggagggtttccgatgctaaaggagtt |
3196495 |
T |
|
| Q |
106 |
ggatctcacaagattaaataaactaagttctatatctatagacaaagatgctttagttaatcttgaacacttcagatttaaaaacaaccctcaattgaag |
205 |
Q |
| |
|
||| ||||| |||||||||| |||||||||| |||||||||| | |||||||||| || |||||||||||| |||| || |||| ||| |||||||| |
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| T |
3196494 |
ggacctcaccagattaaatagactaagttctgtatctatagatagagatgctttacttggtcttgaacactttagatgtatcaacattcctgaattgaag |
3196395 |
T |
|
| Q |
206 |
gt |
207 |
Q |
| |
|
|| |
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|
| T |
3196394 |
gt |
3196393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 3219686 - 3219481
Alignment:
| Q |
17 |
aatttgtttaggctgaatttgtgggatgatgccttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagttggatctcacaa |
116 |
Q |
| |
|
||||| || ||| ||||| ||||||||||||| ||||||||||| | |||||||| | |||||||||| ||||||||||| | |||||||| | |
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| T |
3219686 |
aatttattgaggttgaatctgtgggatgatgcattttctggtgataatttgcattttgaagttggagggtttcttaagctgaaggaacttgatctcacta |
3219587 |
T |
|
| Q |
117 |
gattaaataaactaagttctatatctatagacaaagatgctttagttaatcttgaacacttcagatttaaaaacaaccctcaattgaaggttgtaccaga |
216 |
Q |
| |
|
|||| |||||||||||||| || ||||||| || | ||||||| || |||||| || ||||||||||| ||||| ||||| |||||||| || ||| | |
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| T |
3219586 |
gattgaataaactaagttcaatcactatagagaagggtgctttacttggtcttgatcatttcagatttaacaacaatcctcagttgaaggtggttccaca |
3219487 |
T |
|
| Q |
217 |
agacct |
222 |
Q |
| |
|
|||||| |
|
|
| T |
3219486 |
agacct |
3219481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 3723392 - 3723590
Alignment:
| Q |
26 |
aggctgaatttgtgggatgatgcc-ttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagttggatctcacaagattaaat |
124 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | |||||| | | |||||||||||| || | ||| |||||||||| ||||||||| |
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| T |
3723392 |
aggctgaatttgtgggatgatgcccttttctggtgaaagtttacattttcatgttgaagggtttccaaaactaagggaactggatctcactagattaaat |
3723491 |
T |
|
| Q |
125 |
aaactaagttctatatctatagacaaagatgctttagttaatcttgaacacttcagatttaaaaacaaccctcaattgaaggttgtaccagaagacctc |
223 |
Q |
| |
|
|| ||||||||||| |||||||||| | |||||| || ||||||||| ||| |||||| ||||||||| | ||||| || || ||| |||||||| |
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|
| T |
3723492 |
aagctaagttctatcactatagacaatggagctttactttgtcttgaacatctcaaatttaacaacaaccctaagttgaaagtggttccacaagacctc |
3723590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 3355592 - 3355376
Alignment:
| Q |
6 |
agaatttacctaatttgtttaggctgaatttgtgggatgatgccttttctggtgaaatactgcattttaagaaaggagggtttccaaagctgaaggagtt |
105 |
Q |
| |
|
||||||| || | |||||| ||||||||||||||||||||||||||||||||||||| | || ||| | | |||||||||||| || | ||| | |
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|
| T |
3355592 |
agaatttgccaagtttgttgaggctgaatttgtgggatgatgccttttctggtgaaagtttacactttcaagttgaagggtttccaaaactaagggaact |
3355493 |
T |
|
| Q |
106 |
ggatctcacaagattaaataaactaagttctatatctatagacaaagatgctttagttaatcttgaacacttcagatttaaaaacaaccctcaattgaag |
205 |
Q |
| |
|
|||||||| ||||| | ||| ||||||||||| |||||||||| | |||||| || |||||| || |||||||||| |||||||| | |||||| |
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|
| T |
3355492 |
tgatctcactagattgagtaagctaagttctatcactatagacaatggagctttactttgtcttgatcatatcagatttaacaacaaccccgagttgaag |
3355393 |
T |
|
| Q |
206 |
gttgtaccagaagacct |
222 |
Q |
| |
|
|| || ||| ||||||| |
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|
| T |
3355392 |
gtggttccacaagacct |
3355376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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