View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20051_low_1 (Length: 465)
Name: NF20051_low_1
Description: NF20051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20051_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 20 - 456
Target Start/End: Original strand, 37859188 - 37859624
Alignment:
| Q |
20 |
ggaaataaggagtagtagaaggagaagcaatagcttctaatatcaacctaccaccttcgcgatgaggcctaacatgaacaccaccaaaatcagttattga |
119 |
Q |
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| T |
37859188 |
ggaaataaggagtagtagaaggagaagcaatagcttctaatatcaacctaccaccttcgcgatgaggcctaacatgaacaccaccaaaatcagttattga |
37859287 |
T |
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| Q |
120 |
tgtgagtggtggaggaaagttacaagaagctttattaactcttctagacacacaattattcatgttgttattgttaacatcatttcttgtgtcagaagaa |
219 |
Q |
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| T |
37859288 |
agtgagtggtggaggaaagttacaagaagctttattaactcttctagacacacaattattcatgttgttattgttaacatcatttcttgtgtcagaagaa |
37859387 |
T |
|
| Q |
220 |
aataatgaaacatcaatatcactactttcaccagcattgctaccagtttcactcccaaggctttcagtgcacatttctaagctcttttcacttagcattg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859388 |
aataatgaaacatcaatatcactactttcaccagcattgctaccagtttcactcccaaggctttcagtgcacatttctaagctcttttcacttagcattg |
37859487 |
T |
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| Q |
320 |
atgaggaacgtttcacagtaggatgaacatagactttaccatttgcattttcagttttgttagtttctgttaaagcttgaaggaaactccagctagattt |
419 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859488 |
atgaggaacgtttcacagtaggatgaacatagacgttaccatttgcattttcaattttgttagtttctgttaaagcttgaaggaaactccagctagattt |
37859587 |
T |
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| Q |
420 |
tgtgtcannnnnnncacattcattgttgatgatgatg |
456 |
Q |
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| T |
37859588 |
tgtgtcatttttttcacattcattgttgatgatgatg |
37859624 |
T |
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