View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20051_low_11 (Length: 224)
Name: NF20051_low_11
Description: NF20051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20051_low_11 |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold0889 (1 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28586828 - 28586603
Alignment:
| Q |
1 |
ataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatat--gaaccatatgcaatgca |
98 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
28586828 |
ataaatttatgtgttacaatatgcatatgctgcatacatattttgaccttcaatcagccagtagctcaacaaaagacatatatgaaccatatgcaatgca |
28586729 |
T |
|
| Q |
99 |
ttgttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttccttaagttattgtctctgtatacagctatagcaaaccacttc |
198 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28586728 |
ttgttaagctataaatagctcagcatatcattcccatttcttcaaaacaatcatcttccttaagttattgtctctgtatacagctatagcaaaccacttc |
28586629 |
T |
|
| Q |
199 |
acatcttcacaatatttccagttata |
224 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
28586628 |
acatcttcacaatatttccagttata |
28586603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 26316585 - 26316474
Alignment:
| Q |
102 |
ttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttccttaagttattgtctctgtatacagctatagcaaaccacttcaca |
201 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
26316585 |
ttaagctataaatagctcaacatatcattcccatttctccaaaataatcatcttccttgagttattttctctgtatactgctatagcaaaccacttcaca |
26316486 |
T |
|
| Q |
202 |
tcttcacaatat |
213 |
Q |
| |
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|||| ||||||| |
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|
| T |
26316485 |
tcttaacaatat |
26316474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 28575574 - 28575427
Alignment:
| Q |
1 |
ataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaaccatatgcaatgcatt |
100 |
Q |
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|||||||||||||||||||| ||| |||||||||||| || |||||||||| | |||||||||||| | | ||||||||| | ||||||| |
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| T |
28575574 |
ataaattaatgtgttacaat--gcacatgctgcatacacatgctgaccttcaatctaccagtagctcaaaagagcaaatatgaaacgagtgcaatg---- |
28575481 |
T |
|
| Q |
101 |
gttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatctt |
155 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
28575480 |
-ttaaactataaatagctcaacatatcattcccatttcttcaaaataatcatctt |
28575427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 28580662 - 28580512
Alignment:
| Q |
1 |
ataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaaccatatgcaatgcatt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| ||||||||||| | |||||||||| | || ||||||||||| | || |||| |
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| T |
28580662 |
ataaattaatgtgttacaatgcacatatgc---atacatatgttgaccttcaatatacaagtagctcaaaagaacaaatatgaaccgtgtgaaatg---- |
28580570 |
T |
|
| Q |
101 |
gttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttcctt |
159 |
Q |
| |
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||| |||||||||||||| |||| ||||||||||||||||||| || |||||||||| |
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| T |
28580569 |
-ttatgctataaatagctctacatgtcattcccatttcttcaaaataaccatcttcctt |
28580512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 28568833 - 28568765
Alignment:
| Q |
1 |
ataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaa |
69 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||| |||||||||| || ||||||||||| |
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| T |
28568833 |
ataaattaatgtcttacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaa |
28568765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4161 - 4319
Alignment:
| Q |
1 |
ataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaaccatatgcaatgcatt |
100 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||||||||||||||||||||||| || ||||||||||| | | ||||||||||||| ||||||| |
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| T |
4161 |
ataaattaatgtgttccaat--gcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagcaaatatgaaccatgtgcaatg---- |
4254 |
T |
|
| Q |
101 |
gttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttccttaagttat |
166 |
Q |
| |
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|||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
4255 |
-ttaaactataaatagctccacatattattcccatttcttcaaaataatcatcttccttgagttat |
4319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4365 - 4523
Alignment:
| Q |
1 |
ataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaaccatatgcaatgcatt |
100 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||||||||||||||||||||||| || ||||||||||| | | ||||||||||||| ||||||| |
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| T |
4365 |
ataaattaatgtgttccaat--gcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagcaaatatgaaccatgtgcaatg---- |
4458 |
T |
|
| Q |
101 |
gttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttccttaagttat |
166 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
4459 |
-ttaaactataaatagctccacatattattcccatttcttcaaaataatcatcttccttgagttat |
4523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 5893041 - 5892929
Alignment:
| Q |
109 |
ataaatagctcaacataacattcccatttcttcaaaacaatcatcttccttaagttattgtctctgta---tacagctatagcaaaccacttcacatctt |
205 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||| |
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| T |
5893041 |
ataaatagctccacatatcattcccatttcttcaaaataatcatcttccttgagttattgtctctgtatactactgctatagcaaactacttcacatctt |
5892942 |
T |
|
| Q |
206 |
cacaatatttcca |
218 |
Q |
| |
|
| |||||||||| |
|
|
| T |
5892941 |
aaaaatatttcca |
5892929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 34812832 - 34812935
Alignment:
| Q |
118 |
tcaacataacattcccatttcttcaaaacaatcatcttccttaagttattgtctctgta---tacagctatagcaaaccacttcacatcttcacaatatt |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||| | ||||| |
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|
| T |
34812832 |
tcaacatatcattcccatttcttcaaaataatcatcttccttgagttattgtctctgtatactactgctatagcaaactacttcacatcttaaaaatatc |
34812931 |
T |
|
| Q |
215 |
tcca |
218 |
Q |
| |
|
|||| |
|
|
| T |
34812932 |
tcca |
34812935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 2873 - 3023
Alignment:
| Q |
1 |
ataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaaccatatgcaatgcatt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| ||||||||||| || ||||| | ||| | || ||||| || | | ||||||| |
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|
| T |
2873 |
ataaattaatgtgttacaatacacatatgcagcatacatatgttgaccttcaatcattcagtaacccaaaataacaaataaaaatcgtgtgcaatg---- |
2968 |
T |
|
| Q |
101 |
gttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttc |
156 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
2969 |
-ttaaactataaatagctccacatatcattcccatttcttcaaaataatcatcttc |
3023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 2873 - 3023
Alignment:
| Q |
1 |
ataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaaccatatgcaatgcatt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| ||||||||||| || ||||| | ||| | || ||||| || | | ||||||| |
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|
| T |
2873 |
ataaattaatgtgttacaatacacatatgcagcatacatatgttgaccttcaatcattcagtaacccaaaataacaaataaaaatcgtgtgcaatg---- |
2968 |
T |
|
| Q |
101 |
gttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttc |
156 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
2969 |
-ttaaactataaatagctccacatatcattcccatttcttcaaaataatcatcttc |
3023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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