View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20051_low_5 (Length: 365)
Name: NF20051_low_5
Description: NF20051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20051_low_5 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 42734781 - 42734423
Alignment:
| Q |
7 |
acatcatcaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttg |
106 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42734781 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttg |
42734682 |
T |
|
| Q |
107 |
gcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42734681 |
gcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctac |
42734582 |
T |
|
| Q |
207 |
actgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttccta |
306 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42734581 |
actgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccatatagcctttgtaaaaatatcttgcgccaataagcttccta |
42734482 |
T |
|
| Q |
307 |
caaggatgtaattaaaattcaaaacaggagcatatagaaaaatatcaaagacaattaaa |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42734481 |
caaggatgtaattaaaattcaaaacaggagcatatagaaaaatatcaaagacaattaaa |
42734423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 42743736 - 42744081
Alignment:
| Q |
14 |
caccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataaca-cgaac--cccaacaaaccttataggcggaaactcgtgcttttggcga |
110 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||| | ||| | | | ||||||||||||||||||| | ||||||||||||||| || |
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| T |
42743736 |
caccatcacttattgcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtga |
42743835 |
T |
|
| Q |
111 |
tccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactg |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
42743836 |
tccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaag |
42743935 |
T |
|
| Q |
211 |
tcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttcctacaag |
310 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
42743936 |
tcacgtgcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaa |
42744035 |
T |
|
| Q |
311 |
gatgtaattaaaattcaaaacaggagcatatagaaaaatatcaaag |
356 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||| ||||| |||| |
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|
| T |
42744036 |
gatgtaataaaaattcaaagtatgagcatatagaataatataaaag |
42744081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 42753095 - 42753440
Alignment:
| Q |
14 |
caccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataaca-cgaac--cccaacaaaccttataggcggaaactcgtgcttttggcga |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| | ||| | | | ||||||||||||||||||| | ||||||||||||||| || |
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| T |
42753095 |
caccatcacttattgcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtga |
42753194 |
T |
|
| Q |
111 |
tccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactg |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || | |
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|
| T |
42753195 |
tccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaag |
42753294 |
T |
|
| Q |
211 |
tcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttcctacaag |
310 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
42753295 |
tcacgtgcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaa |
42753394 |
T |
|
| Q |
311 |
gatgtaattaaaattcaaaacaggagcatatagaaaaatatcaaag |
356 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||| ||||| |||| |
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| T |
42753395 |
gatgtaataaaaattcaaagtatgagcatatagaataatataaaag |
42753440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 42762713 - 42763064
Alignment:
| Q |
7 |
acatcatcaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttg |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| | |||||||||||||| |
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|
| T |
42762713 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtctgcatcataacatccatcccaacaaaccttataggctgcaactcgtgcttttg |
42762812 |
T |
|
| Q |
107 |
gcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctac |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
42762813 |
gtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatttcctccagcagttgataaagtgtgtgaaccatgaccttc |
42762912 |
T |
|
| Q |
207 |
actgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttccta |
306 |
Q |
| |
|
||| || || ||||||| | | | ||||| | |||| |||| | ||||||| ||||||| ||||||||||||| ||||||||||| ||| |
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|
| T |
42762913 |
actatcccgtgcactatgaagcgatacatttttggctctataaggatt------tgccagaaagcctttaaaaaaatatcttgctccaataagctttcta |
42763006 |
T |
|
| Q |
307 |
caaggatgtaattaaaattcaaaacaggagcatatagaaaaatatcaaagacaattaaa |
365 |
Q |
| |
|
||| ||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
42763007 |
caaaattgtaa-taaaattcaaaataggagcatatagaaatatatcaaagacaattaaa |
42763064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 42717111 - 42717326
Alignment:
| Q |
14 |
caccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttggcgatcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
42717111 |
caccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacatgaatcccaacaaaccttataggctacaactcgtgcttttggcgatcc |
42717210 |
T |
|
| Q |
114 |
accacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtca |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||| |
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|
| T |
42717211 |
accacttgctgttccattgccatagccaaatacacttgcattagcaacaaaatttcctccggcagttgataaagtatgtgtaccatgaccatcaatgtca |
42717310 |
T |
|
| Q |
214 |
cgggcactattgaatg |
229 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
42717311 |
cgtgcactattaaatg |
42717326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 72 - 306
Target Start/End: Original strand, 42769667 - 42769895
Alignment:
| Q |
72 |
ccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcct |
171 |
Q |
| |
|
|||||| ||||||||||| | ||||||||| || || |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
42769667 |
ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct |
42769766 |
T |
|
| Q |
172 |
ccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagc |
271 |
Q |
| |
|
|| || |||||||||||||||||||||||||| || ||| || ||||||| ||||||| |||||| | | || || | |||||| ||||| |
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|
| T |
42769767 |
cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttgtggatttaccagca------tctgccaaatagc |
42769860 |
T |
|
| Q |
272 |
ctttgtaaaaatatcttgcgccaataagcttccta |
306 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
42769861 |
ctttgtaaaaatatcttgctccaattagcttccta |
42769895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 42717371 - 42717406
Alignment:
| Q |
271 |
cctttgtaaaaatatcttgcgccaataagcttccta |
306 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42717371 |
cctttgtaaaaatatcttgctccaataagcttccta |
42717406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 23040745 - 23040420
Alignment:
| Q |
7 |
acatcatcaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaa---ccccaacaaaccttataggcggaaactcgtgctt |
103 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||| | |||||| |||| |
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|
| T |
23040745 |
acatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatcatgacataaatccccccagcaaaccttataggctgcaactcgagctt |
23040646 |
T |
|
| Q |
104 |
ttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacc |
203 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23040645 |
ttggtgatccaccacttgctgttcctcggccattgccaaatacactcgcattagcaacgaaatttcctccaacagttgataaagtatgtgaaccatgacc |
23040546 |
T |
|
| Q |
204 |
tacactgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttc |
303 |
Q |
| |
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|| |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
23040545 |
atcaaagtcacgtgcactattgaatgtttcatttgggtctctaataggaattggcattgccagatagcctttgttaaaatatcttgctccaataagcttc |
23040446 |
T |
|
| Q |
304 |
ctacaaggatgtaattaaaattcaaa |
329 |
Q |
| |
|
|||||| |||||||| |||||||||| |
|
|
| T |
23040445 |
ctacaaagatgtaataaaaattcaaa |
23040420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 42313964 - 42313912
Alignment:
| Q |
7 |
acatcatcaccatcacttatggcagcttcaaaaccagccaaaatatctgcatc |
59 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
42313964 |
acatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
42313912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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