View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20051_low_6 (Length: 352)
Name: NF20051_low_6
Description: NF20051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20051_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 5024802 - 5025139
Alignment:
| Q |
1 |
gccttagaaataaaactatctttttattaactctaatgtctcgtcaatcgttttttccattatcatttctacttttaacaacttatacttagcccctgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5024802 |
gccttagaaataaaactatctttttattaactctaatgtctcgtcaatcgttttttccattatcatttctacttttaacaacttatacttagcccctgtt |
5024901 |
T |
|
| Q |
101 |
tggtttcccggtggactgtccaaaacgtgcgtctcatcatatacgcagtgtgtttcacatgtttgggtcgcacttagccgacccacgtttaaggtgaagc |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5024902 |
tggtttcccggtggactgtccaaaatgtgcgtctcatcatatacgcagtgtgtttcacatgtttgggtcgcacttagccgacccacgtttaaggtgaagc |
5025001 |
T |
|
| Q |
201 |
tggtatccgtagcttttcaatttggacaaatcgattctcttttccataacatgggtattggctgttttgcccttccaattgtcattaaagggcccccttt |
300 |
Q |
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| T |
5025002 |
tggtatccgtagcttttcaatttggacaaatcgattctcttttccataacatgggtattggctgttttgcccttctaattgtcattaaagggcccccttt |
5025101 |
T |
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| Q |
301 |
ccacaacagcatgcatgtttcttgattgtgtgatttgt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5025102 |
ccacaacagcatgcatgtttcttgattgtgtgatttgt |
5025139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 90 - 332
Target Start/End: Original strand, 53077689 - 53077949
Alignment:
| Q |
90 |
tagcccctgtttggtttcccggtggactgtccaaaacgtgcgtctcatcatatacgcagtgtgtttcacatgtttgggtcgcacttagccgaccca---- |
185 |
Q |
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| T |
53077689 |
tagcccctgtttggtttcccggtggactgtccaaaatgtgtgtctcatcgtatatgccgtgtgtttcacatgtttggatcgcacttagccgactcgtgtt |
53077788 |
T |
|
| Q |
186 |
--------------cgtttaaggtgaagctggtatccgtagcttttcaatttggacaaatcgattctcttttccataacatgggtattggctgttttgcc |
271 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53077789 |
tctctttgaactcgcgtttcaggtgaagctggtatccgtagcttttcaatttggacaaatcgattctcttttccataacatgggtattggctgttttgcc |
53077888 |
T |
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| Q |
272 |
cttccaattgtcattaaagggccccctttccacaacagcatgcatgtttcttgattgtgtg |
332 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
53077889 |
cttccaattgtcataaaagattcccctttccacaacaacatgcatgtttcttgattgtgtg |
53077949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 91 - 332
Target Start/End: Complemental strand, 41892588 - 41892329
Alignment:
| Q |
91 |
agcccctgtttggtttcccggtggactgtccaaaacgtgcgtctcatcatatacgcagtgtgtttcacatgtttgggtcgcacttagccgacccacgttt |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||| | ||||| |
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| T |
41892588 |
agcccctgtttggtttcccggtggactgtccaaaacgtgcgtctcatcacatacgccgtgtgtttcacatgtttggatcgcatttagccgactcgcgttt |
41892489 |
T |
|
| Q |
191 |
a------------------aggtgaagctggtatccgtagcttttcaatttggacaaatcgattctcttttccataacatgggtattggctgttttgccc |
272 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41892488 |
ctctttgaactcgcgtttcaggtgaagctggtatccttagcttttcaatttggacaaatcgattctcttttccataacatgagtattggctgttttgccc |
41892389 |
T |
|
| Q |
273 |
ttccaattgtcattaaagggccccctttccacaacagcatgcatgtttcttgattgtgtg |
332 |
Q |
| |
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||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
41892388 |
ttccaattgtcataaaagattcccctttccacaacaacatgcatgtttcttgattgtgtg |
41892329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 88 - 338
Target Start/End: Original strand, 41407536 - 41407803
Alignment:
| Q |
88 |
cttagcccctgtttggtttcccggtggactgtccaaaacgtgcgtctcatcatatacgcagtgtgtttcacatgtttgggtcgcacttagccgacccacg |
187 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | || |
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| T |
41407536 |
cttagcccctgtttggtttcccggtggattgtccaaaacgtgcgtctcatcatatacgccgtgcgtttcacatgtttgggtcgcacttagccgactcgcg |
41407635 |
T |
|
| Q |
188 |
ttta------------------aggtgaagctggtatccgtagcttttcaatttggacaaatcgattctcttttccataacatgggtattggctgttttg |
269 |
Q |
| |
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||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| ||||| |
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| T |
41407636 |
tttctctttgaactcgcgattcaggtgaagttggtatctgtagctttttaatttggacaa-tcgattctcttttccataacatgggtgttggcttttttg |
41407734 |
T |
|
| Q |
270 |
cccttccaattgtcattaaagggccccctttccacaacagcatgcatgtttcttgattgtgtgatttgt |
338 |
Q |
| |
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| T |
41407735 |
cccttccaattttcataaaagatccccctttccacaacagcatgcatgtttcttgattgtgtgatttgt |
41407803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 33226898 - 33226806
Alignment:
| Q |
196 |
gaagctggtatccgtagcttttcaatttggacaaa-tcgattctcttttccataacatgggtattggctgttttgcccttccaattgtcatta |
287 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33226898 |
gaagctggtatttgtagcttttcaatttggacaaaatcgattcccctctccataacatgggtattggctgttttgcccttctaattgtcatta |
33226806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 31216132 - 31216054
Alignment:
| Q |
209 |
gtagcttttcaatttggacaaa-tcgattctcttttccataacatgggtattggctgttttgcccttccaattgtcatta |
287 |
Q |
| |
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|||||||||||||||||||||| || |||||| | |||||||||||| |||||||| |||| |||||| ||||||||||| |
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| T |
31216132 |
gtagcttttcaatttggacaaaatcaattctcctctccataacatgg-tattggctatttttcccttctaattgtcatta |
31216054 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 48734098 - 48734143
Alignment:
| Q |
89 |
ttagcccctgtttggtttcccggtggactgtccaaaacgtgcgtct |
134 |
Q |
| |
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||||||||||||||||||| |||| |||| ||||||||||||||| |
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| T |
48734098 |
ttagcccctgtttggtttcacggtagactacccaaaacgtgcgtct |
48734143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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