View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20052_high_9 (Length: 328)
Name: NF20052_high_9
Description: NF20052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20052_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 6942595 - 6942439
Alignment:
| Q |
1 |
ccaaatatcatgtgttcattatttgcgtttactgtttctttaannnnnnnnnnnnngtaccagtttgctgttctaacatacttatgggtaacatgccatg |
100 |
Q |
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| T |
6942595 |
ccaaacatcgtgtgttcattatttgcgtttactgtttctttaattttttgatttttgaaccagtttgctgttctaacatacttatgggtaacatgccatg |
6942496 |
T |
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| Q |
101 |
ttaacattggtagggaaaccaatgtaaaatgttacattcctcttaaatgtttttctt |
157 |
Q |
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| T |
6942495 |
ttaacattggtagggaaaccaatgtaaactgttacattcctcttaaatgtttttctt |
6942439 |
T |
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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 6788244 - 6788323
Alignment:
| Q |
143 |
ttaaatgtttttcttcgctctattgttctctaattatgttg----ttgtaatcatctctattcagt-ttacaaatcttgt |
217 |
Q |
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|||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||| |
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| T |
6788244 |
ttaaatctttttcttcgatctattgttctctaattgtgttgtaaattgtaatcatctctatccagtaatacaaatcttgt |
6788323 |
T |
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