View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20053_high_1 (Length: 891)
Name: NF20053_high_1
Description: NF20053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20053_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 732; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 16 - 806
Target Start/End: Original strand, 14224844 - 14225635
Alignment:
| Q |
16 |
catcattccttatttagtatcacatgtcttccctagcttatctaggatgagaatattggtgatttccttttgattcaacttgaatatcctctaaaaatag |
115 |
Q |
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| T |
14224844 |
catcattccttatttagtatcccatgtcttgcctagcttatctaggatgagaatattggtgatttccttttgattcaacttgaatatcctctaaaaatag |
14224943 |
T |
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| Q |
116 |
aagaaactttatttggaaatttagttaacttctttacctttgttgtcattgcagtgttcaaatggtcacactatatgttcaggttgcaaacctaaagtac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14224944 |
aagaaactttatttggaaatttagttaacttctttacctttgctgtcattgcagtgttcaaattgtcacactatatgttcaggttgcaaacctaaagtac |
14225043 |
T |
|
| Q |
216 |
ataacaggtgccctacttgttgtagccacaatctgggaaatattagatgtttagcactagagaaggtggctgcatcttttgaactcccctgtaaatacat |
315 |
Q |
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| T |
14225044 |
ataacaggtgccctacttgttgtagccacaatctgggaaatattagatgtatagcactagagaaggtggctgcatcttttgaactcccctgtaaatacat |
14225143 |
T |
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| Q |
316 |
aggttttcgtgttcaagctgaagtttctgaaaattggccaatgcaagagggtgaagctcaggatgcagggttgtctggtcaagctccaagctggatgcaa |
415 |
Q |
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| T |
14225144 |
aggttttcgtgttcaagctgaagtttctgaaaattggccaatgcaagagggtgaagctcaggatgcagggttgtctggtcaagctccaagctggatgcaa |
14225243 |
T |
|
| Q |
416 |
gaacttgaagataggatttttcataggattgttcagcgcaacgagaacaaggtgtacatcgagatggaaaaggtgaacgatgagatagaaaagatgaagg |
515 |
Q |
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| T |
14225244 |
ggacttgaagataggatttttcataggattgttcagcgcaacgagaacaaggtgtacatcgagatggaaaaggtgaacgatgagatagaaaagatgaagg |
14225343 |
T |
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| Q |
516 |
ataggataaaaacgacattccaggcaaagttgaaggatgggataacaaagatggttcaggaaatggtgaaggatgggagagtaaagatggtccaagcaaa |
615 |
Q |
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| T |
14225344 |
ataggataaaaacgacattccatgcaaagttgaaggatgggataacaaagatggttcaggaaatggtgaaggatgggagagtaaagatggtccaagcaaa |
14225443 |
T |
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| Q |
616 |
ggtgaaggattagatgaagggtcagctgtttgccgagttatctctagcacgaccaccacatcactcttaaacctctcactattcgagctgtttgactgtg |
715 |
Q |
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| T |
14225444 |
ggtgaaggattagatgaagggtcagctgtttgccgagttatctctagcacgaccaccacatcactcttaaacctctcaccattcgagctgtttgaccgtg |
14225543 |
T |
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| Q |
716 |
ctggttta-ttttttatcataacctgatacgtatcataagatttggattttcaagagcattgcataccaaaattcaaacttgtaatcaagta |
806 |
Q |
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| T |
14225544 |
ctggtttatttttttatgataacctgataagtatcataagatttggaatttcaagagcattgcataccaaaattcaaatttgtaatcaagta |
14225635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 63 - 311
Target Start/End: Original strand, 14232103 - 14232349
Alignment:
| Q |
63 |
tgagaatattggtgatttccttttgattcaacttgaatatcctctaaaaatagaagaaactttatttggaaa-tttagttaacttctttacctttgttgt |
161 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||| ||||||||||||||||||| |||| |
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| T |
14232103 |
tgagaatatcggtgatttccttttgattcaaattgaatatcctctaaaaataaaagagaatttatttggaaaatttagttaacttctttaccgacgttgc |
14232202 |
T |
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| Q |
162 |
cattgcagtgttcaaatggtcacactatatgttcaggttgcaaacctaaagtacataacaggtgccctacttgttgtagccacaatctgggaaatattag |
261 |
Q |
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| T |
14232203 |
tattgcagtgttcgaatggtcacactatatgctcagattgcaaacctagagtacataaccggtgccctacttgt---aggcatgagctgggaaatattag |
14232299 |
T |
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| Q |
262 |
atgtttagcactagagaaggtggctgcatcttttgaactcccctgtaaat |
311 |
Q |
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|||| ||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
14232300 |
atgtctagcactggagaaggtggctgcatcttttgcactcccctgtaaat |
14232349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 5037754 - 5037683
Alignment:
| Q |
164 |
ttgcagtgttcaaatggtcacactatatgttcaggttgcaaacctaaagtacataacaggtgccctacttgt |
235 |
Q |
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| T |
5037754 |
ttgcagtgctcaaatggtcacactctatgctctggttgcaaaccaagagtccatgaccggtgccctacttgt |
5037683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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