View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20053_high_3 (Length: 395)
Name: NF20053_high_3
Description: NF20053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20053_high_3 |
 | |
|
| [»] chr8 (9 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Complemental strand, 5604250 - 5603869
Alignment:
| Q |
12 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5604250 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
5604151 |
T |
|
| Q |
112 |
agctcctgcaccacatgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5604150 |
agctcctgcaccacatgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataa |
5604051 |
T |
|
| Q |
212 |
gatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactagtaagttgtttgtgtatttgcttatacttatagcaccgtgattc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
5604050 |
gatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactaataagttgtttgtgtatttgcttttacttatagcaccgtcattc |
5603951 |
T |
|
| Q |
312 |
acaaattaattcattgtcacaatttctaaagaacgagtctattataggatattacacacatttattatggttttacaacttttc |
395 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5603950 |
acaaattaattc--tgtcacaatttctaaagaacgagtctattataggatattacacacatttattatggttttagaacttttc |
5603869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Original strand, 5631120 - 5631501
Alignment:
| Q |
12 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5631120 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
5631219 |
T |
|
| Q |
112 |
agctcctgcaccacatgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5631220 |
agctcctgcaccacatgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataa |
5631319 |
T |
|
| Q |
212 |
gatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactagtaagttgtttgtgtatttgcttatacttatagcaccgtgattc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
5631320 |
gatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactaataagttgtttgtgtatttgcttttacttatagcaccgtcattc |
5631419 |
T |
|
| Q |
312 |
acaaattaattcattgtcacaatttctaaagaacgagtctattataggatattacacacatttattatggttttacaacttttc |
395 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5631420 |
acaaattaattc--tgtcacaatttctaaagaacgagtctattataggatattacacacatttattatggttttagaacttttc |
5631501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 205 - 357
Target Start/End: Original strand, 5648848 - 5649000
Alignment:
| Q |
205 |
caaataagatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactagtaagttgtttgtgtatttgcttatacttatagcacc |
304 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
5648848 |
caaatatgatttcaatatagcatgtttgaattctgaaatcacatgaaactaatttttaaactagtaagttgtttgtgtgtttgcttttacttatagcacc |
5648947 |
T |
|
| Q |
305 |
gtgattcacaaattaattcattgtcacaatttctaaagaacgagtctattata |
357 |
Q |
| |
|
| ||||||||| |||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
5648948 |
atcattcacaaactaatgcttggtcacaatttctaaagaacgagtctattata |
5649000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 13168321 - 13168430
Alignment:
| Q |
12 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||| || ||| ||| |||||||| ||||||| ||||||||||||| | ||| ||||||| |
|
|
| T |
13168321 |
attatactgataacttggggaataagtttagtttacaggctctgctcaattttatgttactgcataataattctgtttatgagcagatgttcgcttgaag |
13168420 |
T |
|
| Q |
112 |
agctcctgca |
121 |
Q |
| |
|
||||| |||| |
|
|
| T |
13168421 |
agctcatgca |
13168430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 5648613 - 5648718
Alignment:
| Q |
16 |
tactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaagagct |
115 |
Q |
| |
|
||||||||| ||||||| |||||| |||||| |||||||||||||| ||| ||||||||||||| || ||||||||| ||||||||| ||||||||||| |
|
|
| T |
5648613 |
tactgataatttggggactaaattcagtttagaggctctgttccattttatgttactgcaaaatatttctgtttatgaacaggtattctcttgaagagct |
5648712 |
T |
|
| Q |
116 |
cctgca |
121 |
Q |
| |
|
| |||| |
|
|
| T |
5648713 |
catgca |
5648718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 6307247 - 6307144
Alignment:
| Q |
12 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
111 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| | |||||||||||| ||| ||||||||||||||| ||||||||| |||| || |||||||| |
|
|
| T |
6307247 |
attataccgataacttagggaataaatttagtttattgactctgttccattttatggtactgcaaaataatttggtttatgagtaggtctttacttgaag |
6307148 |
T |
|
| Q |
112 |
agct |
115 |
Q |
| |
|
|||| |
|
|
| T |
6307147 |
agct |
6307144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 360
Target Start/End: Original strand, 13168570 - 13168661
Alignment:
| Q |
269 |
taagttgtttgtgtatttgcttatacttatagcaccgtgattcacaaattaattcattgtcacaatttctaaagaacgagtctattatagga |
360 |
Q |
| |
|
|||||||||||| | ||||||| ||||| ||||||| | |||||||||||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
13168570 |
taagttgtttgtatgtttgcttttacttctagcaccatcattcacaaattaattcttgctcacaatttctaaagaacaagtctattatagga |
13168661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 5648736 - 5648802
Alignment:
| Q |
121 |
accacatgaacaccacttggtttggttccacagaagatgaa---agcaacaactgaagaggagagaaaaa |
187 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
5648736 |
accacatgaacac---tttgtttggttccacagaagaagaagaaagcaacagctgaagaggagagaaaaa |
5648802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 13168464 - 13168523
Alignment:
| Q |
140 |
gtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaat |
200 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
13168464 |
gtttggttccacagaagaacaaagcaatt-ctgaagaggagagaaaaaatgtcgaatgaat |
13168523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University