View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20053_high_4 (Length: 365)
Name: NF20053_high_4
Description: NF20053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20053_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 53 - 301
Target Start/End: Complemental strand, 3652994 - 3652748
Alignment:
| Q |
53 |
tactgtttataaaattttggatgcttttcttctcattaaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgt |
152 |
Q |
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| T |
3652994 |
tactgtttataaaattttggatgcttttcttctcattaagaagttctgtcctatgcaagtggctctaattctaatcattttaaaatgctttattacacgt |
3652895 |
T |
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| Q |
153 |
tccaggggttaatagatcaagttatagggaaaggaagctccacttaatctgtttcaatctcttttctgcaaaaatgtgtgtataatcaagctatagagat |
252 |
Q |
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| T |
3652894 |
tccaggggttaatggatcaagttatagggaaagcaagctccacttaatctgtttcaatctcttttctgcaaaaat--gtgtataatcaagttatagagat |
3652797 |
T |
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| Q |
253 |
gacaaacaaattgtgcaccatgataactactctgtggttactagttagg |
301 |
Q |
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| T |
3652796 |
gacaaacaaattgtgcaccatgataattagtctgttgttagtagatagg |
3652748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 3659213 - 3658898
Alignment:
| Q |
1 |
atacttgcatgattcagaagcaatttaaaattgacaacatgaaaacttggcatactgtttataaaattttggatgcttttcttctcattaaggagttctg |
100 |
Q |
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| T |
3659213 |
atacttgcatgattcagaagcaattcaaaattgacaacat---aacttggcatactgtttatgaaattttggatgctttttttctcat-aaggagttttg |
3659118 |
T |
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| Q |
101 |
tcctatgcaaatggctctaattctaatcattt-taaaatgctttattacacgttccaggggttaatagatcaagttatagggaaaggaagctccacttaa |
199 |
Q |
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| T |
3659117 |
tccaatgaaaaaggctgtaattctagtcatttgtaaaatgcttcattgtacgttctaaggtttaacagatcaagttatagggaaatcaagctccacttaa |
3659018 |
T |
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| Q |
200 |
tctgtttcaatctcttttctgcaaaaatgtgtgtataatcaagctatagagatgacaaacaaattgtgcaccatgataactactctgtggttactagtta |
299 |
Q |
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| T |
3659017 |
tctgtttcaatctcttatgtgcaaacatgtgtgtatggtcaagttatagagatgacaaaaaaattgtgcaccatgataactagtctgttgttactagtta |
3658918 |
T |
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| Q |
300 |
gggcgttgttacatatgata |
319 |
Q |
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|||| |||||| ||||||| |
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| T |
3658917 |
gggcactgttacgtatgata |
3658898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 89 - 346
Target Start/End: Original strand, 3706454 - 3706713
Alignment:
| Q |
89 |
taaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgttccaggggttaatagatcaagttatagggaaaggaa |
188 |
Q |
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| T |
3706454 |
taaggagttctgtcctacgcaaatggatctaattctaatcattttaaaatgcttcattacacgttccaagggttagcagatcaagttacagggaaagcaa |
3706553 |
T |
|
| Q |
189 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgtgtataatcaag--ctatagagatgacaaacaaattgtgcaccatgataactactctg |
286 |
Q |
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| T |
3706554 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgtatatgatcaagttgtagagagatgacaaacaaattgtgcaccatgataactagtctg |
3706653 |
T |
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| Q |
287 |
tggttactagttagggcgttgttacatatgatatggttagtccaaaaacagcgtaagaaa |
346 |
Q |
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| ||| || |||||||| ||||||||||||||| ||||| |||||| |||| |||||||| |
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| T |
3706654 |
ttgttgcttgttagggcattgttacatatgataaggttattccaaacacagtgtaagaaa |
3706713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 89 - 346
Target Start/End: Complemental strand, 3651083 - 3650824
Alignment:
| Q |
89 |
taaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgttccaggggttaatagatcaagttatagggaaaggaa |
188 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||| || |
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| T |
3651083 |
taaggagttctgtcctacgcaaatggatctaattctaatcattttaaaatgcttcattacacgttccaagggttagcagatcaagttacagggaaagcaa |
3650984 |
T |
|
| Q |
189 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgtgtataatcaa--gctatagagatgacaaacaaattgtgcaccatgataactactctg |
286 |
Q |
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| T |
3650983 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgtatatgatcaaattgtagagagatgacaaacaaattgtgcaccatgataactagtctg |
3650884 |
T |
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| Q |
287 |
tggttactagttagggcgttgttacatatgatatggttagtccaaaaacagcgtaagaaa |
346 |
Q |
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| T |
3650883 |
ttgttgcttgttagggcattgttacatatgataaggttattccaaacacagtgtaagaaa |
3650824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 3639609 - 3639535
Alignment:
| Q |
244 |
tatagagatgacaaacaaattgtgcaccatgataactactctgtggttactagttagggcgttgttacatatgata |
319 |
Q |
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||||||||||| |||||||| |||||||||||||| || ||| | ||||||||||| | | | ||||||||||||| |
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| T |
3639609 |
tatagagatgataaacaaatcgtgcaccatgataattagtct-ttgttactagttaagacatagttacatatgata |
3639535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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