View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20053_low_8 (Length: 286)
Name: NF20053_low_8
Description: NF20053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20053_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 7737503 - 7737774
Alignment:
| Q |
1 |
aatccaccctatagctaaaaaatacgccgtttatgtaccggacttaattttcttcggtggctcaactaccgataagtcggaccggtcagtggcttttcaa |
100 |
Q |
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| T |
7737503 |
aatcaaccctttagccaaaaaatacgccgtttatgtaccggacttaattttcttcggtggctcaactaccgataagtcggaccggtcactggcttttcaa |
7737602 |
T |
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| Q |
101 |
gccgagtgcttggctgtggggttaaagaaactcggggtgaagaaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgaga |
200 |
Q |
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| T |
7737603 |
gccgagtgcttggctgtggggttaaagaaactcggggtggagaaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgaga |
7737702 |
T |
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| Q |
201 |
tgtatagtgagttggttgaagccgtggtagtaagtggtgcagttttggctgtaaaagagtctatgattagta |
272 |
Q |
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| T |
7737703 |
tgtatagtgagttggttgaagccgtggtagtaagtggtgcagttttggctgtaaaagagtctatgattagta |
7737774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 7748440 - 7748700
Alignment:
| Q |
12 |
tagctaaaaaatacgccgtttatgtaccggacttaattttcttcggtggctcaactaccgataagtcggaccggtcagtggcttttcaagccgagtgctt |
111 |
Q |
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| T |
7748440 |
tagctaaaaagtacgccgtttacgtgcccgacctaattttctttggcggctccacgaccgacaagcccaaccggtcaccgacttttcaagctgagtgttt |
7748539 |
T |
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| Q |
112 |
ggctgtggggttaaagaaactcggggtgaagaaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgagatgtatagtgag |
211 |
Q |
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| T |
7748540 |
ggttgtggggttaaagaaactcggggtggagaaatgtgttttggttggattcagttatggtggaatgattgcgtttaaaatggctgaactttacggtgag |
7748639 |
T |
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| Q |
212 |
ttggttgaagccgtggtagtaagtggtgcagttttggctgtaaaagagtctatgattagta |
272 |
Q |
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| T |
7748640 |
tttgttcaagctgtggttgtaactggcgccgttttggctatacaagagtctttgattagta |
7748700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 7768371 - 7768626
Alignment:
| Q |
17 |
aaaaaatacgccgtttatgtaccggacttaattttcttcggtggctcaactaccgataagtcggaccggtcagtggcttttcaagccgagtgcttggctg |
116 |
Q |
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||||| || |||||||| ||||| ||| |||||||||| || ||||| || || |||||| ||||||| ||| | |||||||||| ||||| ||||| |
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| T |
7768371 |
aaaaactatgccgtttacgtacctgacctaattttctttggcggctccacaactgataagccggaccgatcaccgacttttcaagcagagtgtttggcaa |
7768470 |
T |
|
| Q |
117 |
tggggttaaagaaactcggggtgaagaaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgagatgtatagtgagttggt |
216 |
Q |
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||||||||||||||| |||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |||| |
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| T |
7768471 |
aggggttaaagaaacttggggtggagaaatgtgttttagttggatttagttatggtggaatggtggcgtttaaaatggctgagctttatagtgatctggt |
7768570 |
T |
|
| Q |
217 |
tgaagccgtggtagtaagtggtgcagttttggctgtaaaagagtctatgattagta |
272 |
Q |
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| ||| ||||| |||| ||| | ||||||||| || |||||||| ||||||||| |
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| T |
7768571 |
tcaaggtgtggttgtaactggctctgttttggctatacaagagtctttgattagta |
7768626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 32942998 - 32942919
Alignment:
| Q |
143 |
aaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgagatgtatagtgagttggttgaagc |
222 |
Q |
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|||||| |||| ||||| || || || |||||||||||||| ||||||||||||||||||||| ||| |||||| |||| |
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| T |
32942998 |
aaatgtattgttgttggttttagctacggtggaatggtggcttttaaaatggctgagatgtatcctgatttggttcaagc |
32942919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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