View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20054_low_1 (Length: 458)
Name: NF20054_low_1
Description: NF20054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20054_low_1 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 21377131 - 21377582
Alignment:
| Q |
16 |
tttgagactgcaacttttcccttaggatatgacatcaatttggcttcactaattctgagtttt-ctctcccaatgatgcacatgactcgtttaaagaggg |
114 |
Q |
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| T |
21377131 |
tttgagactgcaacttttcccttaggatatggcatcaatttggcttcactaattctgagtttttctctcccaatgatgcacatgactcgcttaaagaggg |
21377230 |
T |
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| Q |
115 |
tgctaggggttctcaagcaaccacaattttagctagagtttggt---cttggtgccttcgtaacctggtgtgtttggcg-tgaaacttggtctttacaca |
210 |
Q |
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| T |
21377231 |
tgctaggggttctcaagcaaccacagttttagctagagtttggtggtcttggtgccttcgtaacctggtgtgtttggcggtgaaacttgatctttacaca |
21377330 |
T |
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| Q |
211 |
tgcttatttgtagcataaagcattcgattgaggtaataacaaacaactttattcccactgctcttgttactccagttaaccgatatgtcaaatcgaacaa |
310 |
Q |
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| T |
21377331 |
tgcttatttgtagcataaagcattcaattgaggtaataacaaacaactttactcccactgctcttgttactccagttaaccgatatgtcaaatggaacaa |
21377430 |
T |
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| Q |
311 |
caataatctc----atgttattttgaatgttgacggtagctgccatggtactcatctcataacagagattagaggggttttgtgtaataattcaggtttg |
406 |
Q |
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| T |
21377431 |
caataatctctcttatgttattttgaatgttgacggtagctgccatggtactcctctcataacagagattagaggggttttgtgtaataattcaggtttg |
21377530 |
T |
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| Q |
407 |
tttcttgcgggttttctgattttcttccaaactcatatgatattatgctagc |
458 |
Q |
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| T |
21377531 |
tttcttgcgggttttctgattttcttccaaactcatatgatattatgctagc |
21377582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 213 - 458
Target Start/End: Complemental strand, 36186023 - 36185775
Alignment:
| Q |
213 |
cttatttgtagcataaagcattcgattgaggtaataacaaacaactttattcccactgctcttgttactccagttaaccgatatgtcaaatcgaacaaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | || || ||||||||||||| |||||||| |
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| T |
36186023 |
cttatttgtagcataaagcattcgattgaggtaataacaaacaacttttctcccactgctcatgttactactgtcaatcgatatgtcaaatggaacaaca |
36185924 |
T |
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| Q |
313 |
ataatctc----atgttattttgaatgttgacggtagctgccatggtactcatctcataacagagattagaggggttttgtgtaataattcaggtttgtt |
408 |
Q |
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| T |
36185923 |
ataatctctcttgtgttattctgaatgttgattgtatttgtcatggtactcctcttataacagggtttggaggggttttgcgaaataattcagg-ttgtt |
36185825 |
T |
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| Q |
409 |
tcttgcgggttttctgattttcttccaaactcatatgatattatgctagc |
458 |
Q |
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| T |
36185824 |
tcttgcaggttttctgattttcttccaaactcaaacgatattatgctagc |
36185775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 36186154 - 36186082
Alignment:
| Q |
19 |
gagactgcaacttttcccttaggatatgacatcaatttggcttcactaattctgagtt-ttctctcccaatga |
90 |
Q |
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| T |
36186154 |
gagactgcagcttttgccttaggatatggcatcaattaggcttcactaattatgagttcttctctcccaatga |
36186082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 19109731 - 19109664
Alignment:
| Q |
392 |
aataattcaggtttgtttcttgcgggtttt-ctgattttcttccaaactcatatgatattatgctagc |
458 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
19109731 |
aataatttaggtttgtttcttgcgggtttttctgattttcttccaaactccaatgatattatgctagc |
19109664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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