View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20054_low_2 (Length: 369)
Name: NF20054_low_2
Description: NF20054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20054_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 10453726 - 10453606
Alignment:
| Q |
6 |
agtagcataggtgatcaaatcagaagatacaattgaatcaaatagacacaattcnnnnnnnnnt--tatacacctttgaataggtacaaaaatcagaaga |
103 |
Q |
| |
|
|||| |||| ||||||||| ||||||| ||||||||||| |||||||||||||| | ||||||| | ||||||||||||||||| | |||| |
|
|
| T |
10453726 |
agtaacatatgtgatcaaaccagaagacacaattgaatccaatagacacaattcaaaaaaaattgatatacacttgtgaataggtacaaaaattataaga |
10453627 |
T |
|
| Q |
104 |
aagacaagaagttcaattcaa |
124 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10453626 |
aagacaagaagttcaattcaa |
10453606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 10453595 - 10453559
Alignment:
| Q |
175 |
ggaagcaagatcaattcagtatatacaattaaatcca |
211 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10453595 |
ggaagaaagatcaattcagtatatacaattaaatcca |
10453559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 10453565 - 10453524
Alignment:
| Q |
220 |
aaatccagctgaggtgaacatgtaatagaagatacgaaaatt |
261 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
10453565 |
aaatccagctgaggtaaaaatgtaataaaagatacgaaaatt |
10453524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University