View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20054_low_3 (Length: 345)
Name: NF20054_low_3
Description: NF20054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20054_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 42672333 - 42672671
Alignment:
| Q |
7 |
gttacatgcagcgaacgccgaattcgagctatggtgtgtagcagatgagcagaccactgactctgatttgcaggatgccttgaattgggcttgtgggaaa |
106 |
Q |
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| T |
42672333 |
gttacatgcagcgaacgccgaattcgagctatggtgtgtagcagatgagcagaccactgactctgatttgcaggatgccttgaattgggcttgtgggaaa |
42672432 |
T |
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| Q |
107 |
ggaggtgcagattgtggcaaaattcaacaagaccaaccttgctattttccaaacacattgaaagaccatgcttcttatgcctttaacagttactttcaga |
206 |
Q |
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| T |
42672433 |
ggaggtgcagattgtagcaaaattcaacaagaccaaccttgctattttccaaacacattgaaagaccatgcttcttatgcctttaacagttactttcaga |
42672532 |
T |
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| Q |
207 |
aattcaagaacaatggtggttcttgttattttagaggtgctgccatgacaacagaagtggatcctagtaagtattattgaatatatttttgataaccaca |
306 |
Q |
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| T |
42672533 |
aattcaagaacaatggtggttcttgttattttagaggtgctgccatgacaacagaagtggatcctagtaagtattattgaatatatttttgataaccaca |
42672632 |
T |
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| Q |
307 |
ccccacttgtgtgagttgtttaaactatgaaatgtacat |
345 |
Q |
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| T |
42672633 |
ccccacttgtgtgagttgtttaaactaggaaatgtacat |
42672671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 37346657 - 37346579
Alignment:
| Q |
33 |
agctatggtgtgtagcagatgagcagaccactgactctgatttgcaggatgccttgaattgggcttgtgggaaaggagg |
111 |
Q |
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||||||||||||||||| | |||||||||||||||||||| || || | |||| |||||||||||||||||||||| |
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| T |
37346657 |
agctatggtgtgtagcaaacgagcagaccactgactctgagctgaagacagtcttggattgggcttgtgggaaaggagg |
37346579 |
T |
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