View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20055_high_10 (Length: 312)

Name: NF20055_high_10
Description: NF20055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20055_high_10
NF20055_high_10
[»] chr8 (2 HSPs)
chr8 (16-297)||(14332823-14333104)
chr8 (16-107)||(24254004-24254095)
[»] chr5 (3 HSPs)
chr5 (16-297)||(21725873-21726155)
chr5 (16-297)||(21805598-21805880)
chr5 (16-107)||(3053406-3053497)
[»] chr7 (7 HSPs)
chr7 (16-297)||(9989802-9990083)
chr7 (16-183)||(17213485-17213654)
chr7 (211-297)||(25327238-25327324)
chr7 (16-107)||(36253448-36253539)
chr7 (18-107)||(13944658-13944747)
chr7 (16-107)||(5212815-5212906)
chr7 (235-298)||(25321647-25321710)
[»] scaffold0094 (1 HSPs)
scaffold0094 (22-150)||(11404-11534)
[»] chr3 (9 HSPs)
chr3 (16-160)||(8748692-8748837)
chr3 (18-92)||(34157100-34157174)
chr3 (16-107)||(4173853-4173944)
chr3 (16-107)||(15249548-15249639)
chr3 (16-107)||(15722495-15722586)
chr3 (16-107)||(36884246-36884337)
chr3 (117-189)||(34157026-34157098)
chr3 (16-91)||(15210285-15210360)
chr3 (16-91)||(15217154-15217229)
[»] chr1 (3 HSPs)
chr1 (16-107)||(23249183-23249274)
chr1 (16-107)||(9913823-9913914)
chr1 (16-107)||(30779226-30779317)
[»] chr4 (4 HSPs)
chr4 (16-85)||(8513350-8513419)
chr4 (16-107)||(17005755-17005846)
chr4 (16-107)||(30241485-30241576)
chr4 (16-107)||(2301503-2301594)
[»] chr2 (2 HSPs)
chr2 (16-107)||(21577419-21577510)
chr2 (23-107)||(19499285-19499369)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 14333104 - 14332823
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaagtaaatta 115  Q
    |||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14333104 attatacaaactagattcatatatatgctcaatgttatggcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaagtaaatta 14333005  T
Q  116 acataaatttgagtaatactttcttcaaaagatgacgtactcgaacacaagacaaacagatacacactaaagtgaactaacaggattgttcaggttctat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||    
T  14333004 acataaatttgagtaatactttcttcaaaagatgacgtactcgaacacaagacaaacagatacacactcaactgaactagcaggattgttcaggctctat 14332905  T
Q  216 cgtccatgttcaggcttgtaggattgttcttaacatatattaagctgtaaaagtttattcctaagaagtcaattgagctctt 297  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14332904 cgtccatgtccaggcttgtaggattgttcttaacatatattaagctgtaaaagtttattcctaagaagtcaattgagctctt 14332823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 24254095 - 24254004
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||| | ||| ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  24254095 attatataaactagatttataaaagtgctcaatgttctaacacaatatatcacaaactaacatgactaaattgttcattagtcaatactcaa 24254004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 21726155 - 21725873
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaagtaaatta 115  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21726155 attatacaaactagattcatatatgtgctcaatgttctggcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaagtaaatta 21726056  T
Q  116 acataaatttgagtaatactttcttcaaaagatgacgtactcgaacacaagacaaacagatacacactaaagtgaactaacaggattgttcaggttctat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||    
T  21726055 acataaatttgagtaatactttcttcaaaagatgacgtactcgaacacaagacaaacagatacacactcaactgaactagcaggattgttcaggctctat 21725956  T
Q  216 cgtccatgttcaggcttgtaggattgttcttaacatatattaagctgt-aaaagtttattcctaagaagtcaattgagctctt 297  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  21725955 cgtccatgtccaggcttgtaggattgttcttaacatatactaagctgtaaaaagtttattcctaagaagtcaattgagctctt 21725873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 21805880 - 21805598
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaagtaaatta 115  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21805880 attatacaaactagattcatatatgtgctcaatgttctggcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaagtaaatta 21805781  T
Q  116 acataaatttgagtaatactttcttcaaaagatgacgtactcgaacacaagacaaacagatacacactaaagtgaactaacaggattgttcaggttctat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||    
T  21805780 acataaatttgagtaatactttcttcaaaagatgacgtactcgaacacaagacaaacagatacacactcaactgaactagcaggattgttcaggctctat 21805681  T
Q  216 cgtccatgttcaggcttgtaggattgttcttaacatatattaagctgt-aaaagtttattcctaagaagtcaattgagctctt 297  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  21805680 cgtccatgtccaggcttgtaggattgttcttaacatatactaagctgtaaaaagtttattcctaagaagtcaattgagctctt 21805598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 3053406 - 3053497
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| ||| |||||| ||||| ||  ||||||||||| | |||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  3053406 attatataaattagatttatataagttgtcaatgttctaacgcaatatatcacaaactaacatgactaaattgttcattagtcagtactcaa 3053497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 9990083 - 9989802
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaagtaaatta 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9990083 attatacaaactagattcatatatgtgctcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaagtaaatta 9989984  T
Q  116 acataaatttgagtaatactttcttcaaaagatgacgtactcgaacacaagacaaacagatacacactaaagtgaactaacaggattgttcaggttctat 215  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |||||    
T  9989983 acataaatttgagtaatactttcttcaaaaaatgacgtactcgaacacaagacaaacagatacacactcaagtgaactagcaggattgttcaagctctat 9989884  T
Q  216 cgtccatgttcaggcttgtaggattgttcttaacatatattaagctgtaaaagtttattcctaagaagtcaattgagctctt 297  Q
    |||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||    
T  9989883 cgtccatgttcaagcttgtaggattgttcttaacatatgttaaactgtaaaagtttatttctaagatgtcaattgagctctt 9989802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 17213485 - 17213654
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatact--caagtaaat 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  17213485 attatacaaactagattcatatatgtgctcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactgaaaagtaaat 17213584  T
Q  114 taacataaatttgagtaatactttcttcaaaagatgacgtactcgaacacaagacaaacagatacacact 183  Q
    ||| | ||||||||| |||||||| |||||||||||||  ||| ||||||||||||||||||||||||||    
T  17213585 taataaaaatttgagaaatactttgttcaaaagatgaccaacttgaacacaagacaaacagatacacact 17213654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 25327238 - 25327324
Alignment:
Q  211 tctatcgtccatgttcaggcttgtaggattgttcttaacatatattaagctgtaaaagtttattcctaagaagtcaattgagctctt 297  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  25327238 tctatcctccatgttcaggcttgcaggactgttcttaacatatattaagttgtaaaagtttattcctaagaagtcaattgagttctt 25327324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 36253448 - 36253539
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||||||||| ||| ||||||||||| ||| |||||||| ||| ||||| |||||||||||||| |||||| |||||||    
T  36253448 attatataaactagattcatataagtgctcaatgttctaacacgatatatcaaaaactaacaagactaaattgttcattagtcagtactcaa 36253539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 13944747 - 13944658
Alignment:
Q  18 tatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||| |||||||||| ||||| ||  ||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||| |||||||    
T  13944747 tatataaactagatttatataagtactcaatgttctaacacagtatatcacaaactaacatgactaaattgttcattagtcagtactcaa 13944658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 5212906 - 5212815
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| ||| || ||| ||||| ||| ||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||| |||||||    
T  5212906 attatataaattaaatttatataagtgatcaatgttctaacacagtatatcacaaactaacatgactaaattgttcattagtcagtactcaa 5212815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 25321647 - 25321710
Alignment:
Q  235 aggattgttcttaacatatattaagctgtaaaagtttattcctaagaagtcaattgagctcttt 298  Q
    |||| |||| |||||||| | | ||||||||||||| |||||||||||||| ||||||| ||||    
T  25321647 aggactgtttttaacataaaatgagctgtaaaagttgattcctaagaagtccattgagcccttt 25321710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 11534 - 11404
Alignment:
Q  22 caaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactc--aagtaaattaacat 119  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||     
T  11534 caaactagattcatatatgtgctcaatattctagcagaatatatcacaaaataacatgactaaattgttcactagtcaatattcaaaagtaaattaacag 11435  T
Q  120 aaatttgagtaatactttcttcaaaagatga 150  Q
    |||||||||||||||||| ||||||||||||    
T  11434 aaatttgagtaatactttgttcaaaagatga 11404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 8748692 - 8748837
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactc--aagtaaat 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||  |||||||     
T  8748692 attatacaaactagattcatatatgtgctcaatgttctagcacaatatatcacaaactaacatgactaagttgctca-tagtcaatactcaaaagtaaag 8748790  T
Q  114 taacataaatttgagtaatactttcttcaaaagatgacgtactcgaa 160  Q
    ||||  ||||||||||||||| || ||||||||||||||||||||||    
T  8748791 taacggaaatttgagtaatacattgttcaaaagatgacgtactcgaa 8748837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 34157174 - 34157100
Alignment:
Q  18 tatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttca 92  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  34157174 tatacaaactagattcatatatgtgctcaatgttctggcacaatatatcacaaaataacatgtctaaattgttca 34157100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 4173853 - 4173944
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||| || |||||| |||||||    
T  4173853 attatataaactagatttatataagtgctcaatgttctaacacaatatatcacaaactaacatgactaaattgtccattagtcagtactcaa 4173944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 15249548 - 15249639
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||||| ||| ||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||| |||||||    
T  15249548 attatataaactagatttatataagtgctcaatgttctaacacagtatatcacaaactaacatgactaaattgttcattagtcagtactcaa 15249639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 15722586 - 15722495
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||||| ||| ||||||||||| | || ||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  15722586 attatataaactagatttatataagtgctcaatgttctaactcagtatatcacaaactaacatggctaaattgttcattagtcaatactcaa 15722495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 36884246 - 36884337
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||||| ||  ||||||||||| |||||||||||||||| ||||||||||||||||| || |||||| |||||||    
T  36884246 attatataaactagatttatataagtaatcaatgttctaacacaatatatcacaaactaacatgactaaattgtccattagtcagtactcaa 36884337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 34157098 - 34157026
Alignment:
Q  117 cataaatttgagtaatactttcttcaaaagatgacgtactcgaacacaagacaaacagatacacactaaagtg 189  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||||||  |||||||| |||||| || |||||    
T  34157098 cataaatttgaataatactttgttcaaaagatgacgtgctcgaacacgtgacaaacacatacacgctcaagtg 34157026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 15210285 - 15210360
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttc 91  Q
    |||||| |||||||| | ||||| ||| ||||||||||| |||| ||| ||||||| |||||||||| ||||||||    
T  15210285 attatataaactagagttatataagtgctcaatgttctaacacagtatttcacaaactaacatgactgaattgttc 15210360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 15217154 - 15217229
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttc 91  Q
    |||||| |||||||| | ||||| ||| ||||||||||| |||| ||| ||||||| |||||||||| ||||||||    
T  15217154 attatataaactagagttatataagtgctcaatgttctaacacagtatttcacaaactaacatgactgaattgttc 15217229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 23249274 - 23249183
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  23249274 attatataaactagatttatataagtgctcaatgttctaacacaatatatcacaaactaacatgactaaattgttcattagtcagtactcaa 23249183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 9913914 - 9913823
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||||| ||| ||||||||||| | || ||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  9913914 attatataaactagatttatataagtgctcaatgttctaactcagtatatcacaaactaacatggctaaattgttcattagtcaatactcaa 9913823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 30779317 - 30779226
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||||| ||| ||||||||||| | || ||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  30779317 attatataaactagatttatataagtgctcaatgttctaactcagtatatcacaaactaacatggctaaattgttcattagtcaatactcaa 30779226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 8513350 - 8513419
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaa 85  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  8513350 attatacaaactagattaatatatgtgctcaatgttctagcacaatatatcataaaataacatgactaaa 8513419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 17005846 - 17005755
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||||| ||  ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  17005846 attatataaactagatttatataagttgtcaatgttctaacacaatatatcacaaactaacatgactaaattgttcattagtcagtactcaa 17005755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 30241576 - 30241485
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||||| ||| ||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||| |||||||    
T  30241576 attatataaactagatttatataagtgctcaatgttctaacacaatatatcacaaactaacatgactaaactgttcattagtcagtactcaa 30241485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 2301503 - 2301594
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| |||   ||| ||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  2301503 attatataaactagatttatacgagtgctcaatgttctaacacagtatatcacaaactaacatgactaaattgttcattagtcaatactcaa 2301594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 21577510 - 21577419
Alignment:
Q  16 attatacaaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||| |||||||||| ||||| ||| ||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||| |||||||    
T  21577510 attatataaactagatttatataagtgctcaatgttctaacacagtatatcacaaactaacatgactaaattgttcattagtcagtactcaa 21577419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 19499285 - 19499369
Alignment:
Q  23 aaactagattcatatatgtgttcaatgttctagcacaatatatcacaaaataacatgactaaattgttcactagtcaatactcaa 107  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||  |||||||    
T  19499285 aaactagattcatataagtgctcaatgttctaacacaatatatcaaaaaataacatgactaaattattcattagtcggtactcaa 19499369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University